View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13178_low_4 (Length: 557)
Name: NF13178_low_4
Description: NF13178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13178_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 138 - 537
Target Start/End: Complemental strand, 35406152 - 35405755
Alignment:
| Q |
138 |
tgacttgttccaaggcttctgtggtaatagtattaatgataaagaagggaaaggttggtgagatgaattaattaaggtgttgctcagagactcttttgaa |
237 |
Q |
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| T |
35406152 |
tgacttgttccaaggcttctgtggtaatagtattaatgataaagaagggaaaggttggtgagatgaattaattaaggtgttgctcagagactcttttgaa |
35406053 |
T |
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| Q |
238 |
ctttcagcatcaaatcatcattgtctgaatatgcatttgattcatgtattgatgatggtgcatgatattattgatgaagtgctgctacatgcagtttgaa |
337 |
Q |
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| T |
35406052 |
ctttcagcatcaaatcatcattgtctgaatatgcatttgattcatgtattgatgatggtgcatgatattattgatgaagtgctgctgcatgcagtttgaa |
35405953 |
T |
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| Q |
338 |
cgatttaatttttggctttgtttgggattgaacaaagggaaaatttgtgtgaggaataataagagagaagaagggtgggttcaaatgagtaagttgaaaa |
437 |
Q |
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| T |
35405952 |
cgatttaatttttggctttgtttgggattgaacaaagggaaaatttgtgtgaggaataataagagagaagaagggtgggttcaaatgagtaagttg--aa |
35405855 |
T |
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| Q |
438 |
acttattgaaagcattccattatgaaaaggtagacctacccaactgaaacaatgctccttttattgcacttcttcaatgttgcatctgccaccatacact |
537 |
Q |
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| T |
35405854 |
acttattgaaaggattccattatgaaaaggtagacctacccaactgaaacaatgctccttttattgcacttcttcaatgttgcatctgccaccatacact |
35405755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 35406277 - 35406185
Alignment:
| Q |
13 |
aatatccatatctttcaatgcaaggaaagaaagacaagaataagctagaaaaatgtgattttcatgtgcattaccatgctaaaacaccaacac |
105 |
Q |
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| T |
35406277 |
aatatccatatctttcaatgcaaggaaagaaagacaagaataaactagaaaaatgtgattttcatgtgcattaccatgctaaaacaccaacac |
35406185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 536
Target Start/End: Original strand, 48020980 - 48021045
Alignment:
| Q |
471 |
acctacccaactgaaa-caatgctccttttattgcacttcttcaatgttgcatctgccaccatacac |
536 |
Q |
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| T |
48020980 |
acctacccaactgaaaacaatcccctttttattgcactccttcaatgt-gcatctgccaccatacac |
48021045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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