View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13178_low_6 (Length: 462)
Name: NF13178_low_6
Description: NF13178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13178_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 22418144 - 22418378
Alignment:
| Q |
20 |
aacattactaggtcttcaaattagaacaggattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaatt |
119 |
Q |
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| T |
22418144 |
aacattactaggtcttcaaattagagtaggattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaatt |
22418243 |
T |
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| Q |
120 |
gaaaagcttcaaatatcattatctctttctttgaaacccatatatcatctctatcattgtttcctcaactcttcttgtaggccatcactagtaagccacc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22418244 |
gaaaagcttcaaatatcattatctctttctttgaaacccatatatcatctctatcattgtttcctcaactcttcttgtaggccatcactagtaagccacc |
22418343 |
T |
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| Q |
220 |
cacgaaacacaccacgatccaacaaatacacaatt |
254 |
Q |
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| T |
22418344 |
cacgaaacacaccacgatccaacaaatacgcaatt |
22418378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 180 - 444
Target Start/End: Original strand, 12813603 - 12813864
Alignment:
| Q |
180 |
ttcctcaactcttcttgtaggccatcactagtaagccacccacgaaacacaccacgatccaacaaatacacaattgactgccgccacatatatannnnnn |
279 |
Q |
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| T |
12813603 |
ttcctcaactcttcttgtaggccatcaccagtaagccacccacgaaacacaccacgatccaacaaatacacaattgac---cgccacatatatatttttt |
12813699 |
T |
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| Q |
280 |
nacattccattttaaccctatcttctaaacataaaatannnnnnnggatcaatgtcatgaaatattaaccctctcactccttcttctaagaaaattttga |
379 |
Q |
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| T |
12813700 |
tacattccattttaaccctatcttctaaacataaaatatttttttggatcaatgtcatgaaatattaaccctctcactccttcttctaagaaaattttga |
12813799 |
T |
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| Q |
380 |
caaaggtcatatatagtgcatggttagaacgtgttgaaaaacaaaacgccctctttatagaaact |
444 |
Q |
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| T |
12813800 |
caaaggtcatatatagtgcatggttagaacgtgttgaaaaacaaaacgccccctttatagaaact |
12813864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 12813304 - 12813465
Alignment:
| Q |
20 |
aacattactaggtcttcaaattagaacaggattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaatt |
119 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813304 |
aacattactaggtcttcaaattagagaagaattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaatt |
12813403 |
T |
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| Q |
120 |
gaaaagcttcaaatatcattatctctttctttgaaacccatatatcatctctatcattgttt |
181 |
Q |
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| T |
12813404 |
gaaaagtttcaaatatcattatctctttctttgaaacccataaatcatctctatcactgttt |
12813465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 30622037 - 30622111
Alignment:
| Q |
180 |
ttcctcaactcttcttgtaggccatcactagtaagccacccacgaaacacaccacgatccaacaaatacacaatt |
254 |
Q |
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||||||||||| |||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
30622037 |
ttcctcaactcctcttgtgggccatcaccagtaagccacccacgaaaaacaccacgatccaacaaatacgcaatt |
30622111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 86 - 181
Target Start/End: Original strand, 14998348 - 14998443
Alignment:
| Q |
86 |
ttctttccaatcattctcctgcatcgacgaaattgaaaagcttcaaatatcattatctctttctttgaaacccatatatcatctctatcattgttt |
181 |
Q |
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||||||| |||| ||||| || ||| || |||||||||||||| |||||||||||||||||||||| ||||||| | ||||||| ||||| ||||| |
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| T |
14998348 |
ttctttcaaatctttctcatgtatctacaaaattgaaaagcttaaaatatcattatctctttctttcaaacccagaaatcatctttatcactgttt |
14998443 |
T |
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