View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13178_low_7 (Length: 462)
Name: NF13178_low_7
Description: NF13178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13178_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 452
Target Start/End: Original strand, 28084264 - 28084701
Alignment:
| Q |
16 |
aatttaatatgtcagttttttccactttaattttgttaattttattgattaaaatttgaattccgaggaaaactcgagttttgtttgagtgacaaatgtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28084264 |
aatttaatatgtcagttttttccactttaattttgttaattttattgattaaaatttgaattccgaggaaaactcgagttttgtttgagtgacaaatgtt |
28084363 |
T |
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| Q |
116 |
agtaatcagttgttactaagattttctccccaggaaaactcgagtttgaatcatgactagaacagttattgacaaaactttagttgtcttctgattgaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28084364 |
agtaatcagttgttactaagattttctccccaggaaaactcgagtttgaatcatgactagaacagttattgacaaaactttagttgtcttctgattgaaa |
28084463 |
T |
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| Q |
216 |
ttcggattattgaaatcctgactaaagttttg-nnnnnnncgctgttgacaaaattgtccaatgaagagtagtcactaccacattgcggtagatatttca |
314 |
Q |
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| T |
28084464 |
ttcggattattgaaatcctgactaaagttttgttttttttcgctgttgacaaaattgtccaatgaagagtagtcactaccacattgcggtagatatttca |
28084563 |
T |
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| Q |
315 |
taaatataatatgcttatcnnnnnnntctaaattcgtgagggtgttttagaaataataatannnnnnnacagaaggaatggtatcaaacatgatttcgtg |
414 |
Q |
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| T |
28084564 |
taaatataatatgcttatcaaaaaaatctaaattcgtgagggtgttttagaaataataatatttttttacagaaggaatggtatcaaacatgatttcgtg |
28084663 |
T |
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| Q |
415 |
cctatatttgagactgaagtagtatatgttgagtatta |
452 |
Q |
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| T |
28084664 |
cctatatttgagactgaagtagtatatgttgagtatta |
28084701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 28054229 - 28054307
Alignment:
| Q |
147 |
aggaaaactcgagtttgaatcatgactagaacagttattgacaaaactttagttgtcttctgattgaaattcggattat |
225 |
Q |
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| T |
28054229 |
aggaaaactcgagtttgaatcctcactagaacaattgctagcaaaactttagttgttttctgattgaaattcggattat |
28054307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 27928453 - 27928388
Alignment:
| Q |
258 |
tgttgacaaaattgtccaatgaagagtagtcactaccacattgcggtagatatttcataaatataa |
323 |
Q |
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| T |
27928453 |
tgttgacaaaattgtccaaaaaagattagtcactaccacattgcggtagatatttcgtacatataa |
27928388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 27928925 - 27928769
Alignment:
| Q |
19 |
ttaatatgtcagttttttccactttaattttgttaattttattgattaaaatttgaattccgaggaaaactcgagttttgtttgagtgacaaatgttagt |
118 |
Q |
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| T |
27928925 |
ttaatatgttagttttttaccatttaattttgttaattttaataatcaaattttgaatttggaggaaaactttagtttt-ttttaatgactaatgtcatt |
27928827 |
T |
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| Q |
119 |
aatcagttgttactaagattttctccccaggaaaactcgagtttgaatcatgactaga |
176 |
Q |
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||| ||| |||| |||| |||||| || | ||||||||||||||||| |||||||| |
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| T |
27928826 |
aattagtggttaataagtttttcttcctggaaaaactcgagtttgaattgtgactaga |
27928769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 28054045 - 28054106
Alignment:
| Q |
16 |
aatttaatatgtcagttttttccactttaattttgttaattttattgattaaaatttgaatt |
77 |
Q |
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|||||||||| ||||||||| || |||||||||||||| ||||||| ||||||||||||||| |
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| T |
28054045 |
aatttaatatatcagtttttccccctttaattttgttatttttattaattaaaatttgaatt |
28054106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 28025395 - 28025450
Alignment:
| Q |
256 |
gctgttgacaaaattgtccaatgaagagtagtcactaccacattgcggtagatattt |
312 |
Q |
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| T |
28025395 |
gctgttgacaaaattgtccaatgaagattagtcacta-cgcattccggtagatattt |
28025450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 28025087 - 28025165
Alignment:
| Q |
147 |
aggaaaactcgagtttgaatcatgactagaacagttattgacaaaactttagttgtcttctgattgaaattcggattat |
225 |
Q |
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| T |
28025087 |
aggaaaattcgagtttgaatcctgactagaataattatcgacaaaactatacttgtattcttattgaaatccgaattat |
28025165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 27928734 - 27928684
Alignment:
| Q |
147 |
aggaaaactcgagtttgaatcatgactagaacagttattgacaaaacttta |
197 |
Q |
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|||||||||| ||||| ||||||||||||||| ||||||| ||||||||| |
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| T |
27928734 |
aggaaaactcaagtttaaatcatgactagaacgattattgataaaacttta |
27928684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 28054489 - 28054554
Alignment:
| Q |
258 |
tgttgacaaaattgtccaatgaagagtagtcactaccacattgcggtagatatttcataaatataa |
323 |
Q |
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||||||||||||||| ||||| ||| ||| |||||||| ||| || |||||||||| || |||||| |
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| T |
28054489 |
tgttgacaaaattgttcaatgcagattagccactaccatattccgatagatatttcgtacatataa |
28054554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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