View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13178_low_8 (Length: 428)
Name: NF13178_low_8
Description: NF13178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13178_low_8 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 21 - 428
Target Start/End: Original strand, 12813220 - 12813625
Alignment:
| Q |
21 |
catcatcatcttcatagttcatcaacccttcaaaataaaaatcatcctatgtgcctcttcaaaattaataaccatatgcatttaaacattattaggtctt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
12813220 |
catcatcatcttcatagttcatcaacccttcaaaataaaagtcatcctatgtgcctcttcaaaattaagaaccatatgcatttaaacattactaggtctt |
12813319 |
T |
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| Q |
121 |
caaattagagaaggattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaattgaaaagcttcaaatat |
220 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12813320 |
caaattagagaagaattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaattgaaaagtttcaaatat |
12813419 |
T |
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| Q |
221 |
cattatctctttctttgaaacccataaatcatctctatcattgtttgaattgnnnnnnnnngaaagaggaagagtaagattggtgattagtttcgtttga |
320 |
Q |
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| T |
12813420 |
cattatctctttctttgaaacccataaatcatctctatcactgtttgaattg--aaacaaagaaagaggaagagtaagattggtgattagtttcgtttga |
12813517 |
T |
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| Q |
321 |
gggtttgacagatgattgcaaaagtggttttctaacaccagtaagagaatgatcatacattccaataacctcctgaagagccaacttcctcaactcttct |
420 |
Q |
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| T |
12813518 |
gggtttgacagatgattgcaaaagtggttttctaacaccagtaagagaatgatcatacattccaataacctcctgaagagccaacttcctcaactcttct |
12813617 |
T |
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| Q |
421 |
tgtaggcc |
428 |
Q |
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|||||||| |
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| T |
12813618 |
tgtaggcc |
12813625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 22418056 - 22418305
Alignment:
| Q |
17 |
acatcatcatcatcttcatagttcatcaacccttcaaaataaaaatcatcctatgtgcctcttcaaaattaataaccatatgcatttaaacattattagg |
116 |
Q |
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| T |
22418056 |
acatcatcatcatcttcatagttcatcaacccttcaaaataaaaatcatcctatgtgcctcttcaaaattaagaaccatatgcatttaaacattactagg |
22418155 |
T |
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| Q |
117 |
tcttcaaattagagaaggattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaattgaaaagcttcaa |
216 |
Q |
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| T |
22418156 |
tcttcaaattagagtaggattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaattgaaaagcttcaa |
22418255 |
T |
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| Q |
217 |
atatcattatctctttctttgaaacccataaatcatctctatcattgttt |
266 |
Q |
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| T |
22418256 |
atatcattatctctttctttgaaacccatatatcatctctatcattgttt |
22418305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 14998348 - 14998449
Alignment:
| Q |
171 |
ttctttccaatcattctcctgcatcgacgaaattgaaaagcttcaaatatcattatctctttctttgaaacccataaatcatctctatcattgtttgaat |
270 |
Q |
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||||||| |||| ||||| || ||| || |||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||| |
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| T |
14998348 |
ttctttcaaatctttctcatgtatctacaaaattgaaaagcttaaaatatcattatctctttctttcaaacccagaaatcatctttatcactgtttgaat |
14998447 |
T |
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| Q |
271 |
tg |
272 |
Q |
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|| |
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| T |
14998448 |
tg |
14998449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 14998276 - 14998326
Alignment:
| Q |
22 |
atcatcatcttcatagttcatcaacccttcaaaataaaaatcatcctatgt |
72 |
Q |
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| T |
14998276 |
atcatcatcttcataattcataaacccttcaaaataaaaatcatcttatgt |
14998326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 428
Target Start/End: Original strand, 30621994 - 30622059
Alignment:
| Q |
363 |
aagagaatgatcatacattccaataacctcctgaagagccaacttcctcaactcttcttgtaggcc |
428 |
Q |
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| T |
30621994 |
aagagaatgatcgtacattccaataacctcgtgaagagccaacttcctcaactcctcttgtgggcc |
30622059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 353
Target Start/End: Complemental strand, 48292701 - 48292638
Alignment:
| Q |
290 |
aagagtaagattggtgattagtttcgtttgagggtttgacagatgattgcaaaagtggttttct |
353 |
Q |
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| T |
48292701 |
aagagtgagaatggtgattagttacgtttgagggtttgacagatgagagcaaaagtggctttct |
48292638 |
T |
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