View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13178_low_9 (Length: 402)
Name: NF13178_low_9
Description: NF13178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13178_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 1446850 - 1447223
Alignment:
| Q |
18 |
gatttatatttcatattcatcatatgacccatgtatgaagaaagtattgnnnnnnnnnnnnnnattgtaacaatttgctgtgaaaatgtattagtttatt |
117 |
Q |
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| T |
1446850 |
gatttatatttcatattcatcatatgacccatgtatgaagaaagtattggttttttttttgttgttgtaacaatttgctgtgaaaatgtattagtttgtt |
1446949 |
T |
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| Q |
118 |
atggtaaagaaacatgaaaaatagttctaagattttcacatttgcccacggtatatcatggtttccgaacaatgccattgactatttctgaggtttcact |
217 |
Q |
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| T |
1446950 |
atggtaaagaaacatgaaaaatagttctaagattttcgcatttgcccatggtatatgatggttcccgaacaatgccattgactatttctgaggtttcact |
1447049 |
T |
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| Q |
218 |
ttggtcccttaactagtttttgctctgtttgagtcacttgattatatctttgttactcaagaaggtcctttcaaccccatgtgtttaaggtagaccaaca |
317 |
Q |
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| T |
1447050 |
ttggtcccttaactagcttttgctctgtttgagtcacttgattatatctttgttactcaagaaggtcctttcaaccccatgtgtttaaggtagaccaaca |
1447149 |
T |
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| Q |
318 |
ttgtatgcggtgcaccaaaaa-tctaattaannnnnnnaatcttaaccgtttgatctatttgaattttgtatat |
390 |
Q |
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| T |
1447150 |
ttatatgtggtgcaccaaaaaatctcattaatttttttaatcttaaccgtttgatctatttgaattttgtatat |
1447223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 336
Target Start/End: Original strand, 1450071 - 1450161
Alignment:
| Q |
234 |
tttttgctctgtttgagtcacttgattatatctttgttactcaagaaggtcctttcaaccccatgtgtttaaggtagaccaacattgtatgcggtgcacc |
333 |
Q |
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| T |
1450071 |
tttttgctctgtttgagtcacttaattatatctttgttactcaagaaggtac------------gtgtttaaggtagaccaacattgtaggtggtgcacc |
1450158 |
T |
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