View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13179_high_1 (Length: 412)

Name: NF13179_high_1
Description: NF13179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13179_high_1
NF13179_high_1
[»] chr2 (2 HSPs)
chr2 (12-338)||(16286631-16286953)
chr2 (93-190)||(5244220-5244317)
[»] chr4 (2 HSPs)
chr4 (252-338)||(50167480-50167566)
chr4 (93-191)||(36701704-36701802)
[»] chr5 (1 HSPs)
chr5 (93-190)||(29856757-29856854)
[»] chr7 (2 HSPs)
chr7 (250-306)||(17472245-17472301)
chr7 (250-306)||(17580913-17580969)
[»] chr8 (1 HSPs)
chr8 (260-306)||(18428486-18428532)
[»] chr1 (1 HSPs)
chr1 (250-306)||(43381620-43381676)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 338
Target Start/End: Complemental strand, 16286953 - 16286631
Alignment:
Q  12 attattctacctatactattagcctacatataccaatatatgttttcttcagttgtctcatctgtcttcttctcttccctgtcaaactaaataacgatat 111  Q
    ||||||||||||||||||||| |||| ||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16286953 attattctacctatactattaacctatatataccaat----gttttcttcagttgtctcatctgtcttcttctcttccctgtcaaactaaataacgatat 16286858  T
Q  112 tataatgacaccaagatctgataatatatgtgagatcaaccccgtgaaggagtcatggaccgtagttgtttggattgtccttgcttggttcctctcacca 211  Q
    |||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  16286857 tataatgacaccaaaatctgataatatctttgagatcaaccccgtgaaggagtcatggaccatagttgttcggattgtccttgcttggtttctctcacca 16286758  T
Q  212 tttcaacattcagttatcaaattcgaaattatttcaaaaaataatgtttcatccctattttctaaatatcacatatttgttcttggttcttgactcactg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16286757 tttcaacattcagttatcaaattcgaaattatttcaaaaaataatgtttcatccctattttctaaatatcacatatttgttcttggttcttgactcactg 16286658  T
Q  312 tagtttataatatattaaaatccatca 338  Q
    ||||||||||||||||||||| |||||    
T  16286657 tagtttataatatattaaaattcatca 16286631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 5244317 - 5244220
Alignment:
Q  93 tcaaactaaataacgatattataatgacaccaagatctgataatatatgtgagatcaaccccgtgaaggagtcatggaccgtagttgtttggattgtc 190  Q
    |||| ||||| ||||| ||||||||| || ||||||||||||| || | ||| |||||||| |||||||| ||||||| ||| |||||| ||||||||    
T  5244317 tcaatctaaaaaacgagattataatggcatcaagatctgataacatctctgaaatcaaccctgtgaaggaatcatggatcgtggttgttcggattgtc 5244220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 338
Target Start/End: Complemental strand, 50167566 - 50167480
Alignment:
Q  252 ataatgtttcatccctattttctaaatatcacatatttgttcttggttcttgactcactgtagtttataatatattaaaatccatca 338  Q
    ||||||| |||||| |||| ||||||||||||||||||||||||||||||| |||||    ||||||||||||||||||||||||||    
T  50167566 ataatgtctcatccatattctctaaatatcacatatttgttcttggttctttactcatctaagtttataatatattaaaatccatca 50167480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 36701802 - 36701704
Alignment:
Q  93 tcaaactaaataacgatattataatgacaccaagatctgataatatatgtgagatcaaccccgtgaaggagtcatggaccgtagttgtttggattgtcc 191  Q
    |||| ||||| ||||| |||||| ||||| ||||||||||||| || | |||||||| ||| |||||||| ||||||| ||| |||||| |||||||||    
T  36701802 tcaatctaaaaaacgagattatagtgacatcaagatctgataacatctctgagatcagccctgtgaaggaatcatggatcgtggttgttcggattgtcc 36701704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 29856757 - 29856854
Alignment:
Q  93 tcaaactaaataacgatattataatgacaccaagatctgataatatatgtgagatcaaccccgtgaaggagtcatggaccgtagttgtttggattgtc 190  Q
    |||| ||||| ||||| ||||||||| || ||||||||||||| |||| |||||||| ||| |||||||| ||||||| ||| |||||| ||||||||    
T  29856757 tcaatctaaaaaacgagattataatggcatcaagatctgataacatatctgagatcagccctgtgaaggaatcatggatcgtggttgttcggattgtc 29856854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 17472245 - 17472301
Alignment:
Q  250 aaataatgtttcatccctattttctaaatatcacatatttgttcttggttcttgact 306  Q
    ||||| ||| |||||| |||| ||||||||||||||||||||| |||||||||||||    
T  17472245 aaatagtgtctcatccttattctctaaatatcacatatttgtttttggttcttgact 17472301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 17580969 - 17580913
Alignment:
Q  250 aaataatgtttcatccctattttctaaatatcacatatttgttcttggttcttgact 306  Q
    ||||| ||| |||||| |||| ||||||||||||||||||||| |||||||||||||    
T  17580969 aaatagtgtctcatccttattctctaaatatcacatatttgtttttggttcttgact 17580913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 18428486 - 18428532
Alignment:
Q  260 tcatccctattttctaaatatcacatatttgttcttggttcttgact 306  Q
    |||||| |||| ||||||||||||||||||||| ||||| |||||||    
T  18428486 tcatccttattctctaaatatcacatatttgtttttggtccttgact 18428532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 43381620 - 43381676
Alignment:
Q  250 aaataatgtttcatccctattttctaaatatcacatatttgttcttggttcttgact 306  Q
    ||||| ||| |||||  |||| |||||||||||||||||||||  ||||||||||||    
T  43381620 aaatagtgtctcatctttattctctaaatatcacatatttgtttctggttcttgact 43381676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University