View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13179_high_4 (Length: 216)
Name: NF13179_high_4
Description: NF13179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13179_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 53616880 - 53616684
Alignment:
| Q |
1 |
ttgacgtagaattcaacttgagaaacaggatgagccaatggaattttgaaatgctcttcccatttcggtgattgtgagtttgagataacgcgcgtacgcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53616880 |
ttgacgtagaattcaacttgagaaacaggatgagccaatggaattttgaaatgctcttcccatttcggtgattgtgagtttgagataacgcgcgtacgcg |
53616781 |
T |
|
| Q |
101 |
ccactgtagcaccggcgagacaaacggtaacgtaaggatcgctagtgatgattttatggtgacgatgacgtgtaagatggttttttcctttagtggt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53616780 |
ccactgtagcaccggcgagacaaacggtaacgtaaggatcgctagtgatgattttatggtgacgatgacgtgtaagatggttttttcctttagtggt |
53616684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University