View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13179_low_2 (Length: 381)
Name: NF13179_low_2
Description: NF13179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13179_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 12 - 372
Target Start/End: Original strand, 31061101 - 31061461
Alignment:
| Q |
12 |
agagataattaggggaatctaaaattcgaaagacaatggcattataaaagtcctgcctaagaaaaatattgggacatcggttaacaaaactttattcaat |
111 |
Q |
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| T |
31061101 |
agagataattaggagaatctaaaattcgaaagacaatggcattataaaagtcctgcctaagaaaaatattgggacatccgttaacaaaactttattcaat |
31061200 |
T |
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| Q |
112 |
taaatataaatattttatacataactaagatcacaattgaagaaacttttgattttcttcaatggttacacaatttcattggtcatgaaagctgtgtcta |
211 |
Q |
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| T |
31061201 |
taaatataaatattttatacatagctaagatcacaattgaagaaacttttgattttcttcaatggttacacaatttcattggtcatgaaagctgtgtcta |
31061300 |
T |
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| Q |
212 |
taatcaaatattataagttttctttttcaaactataaagagacaagtactgaaataactaaagagacagtcactacaaaaccctcagcggttcatccttg |
311 |
Q |
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| T |
31061301 |
taatcaaatattataagttttctttttcaaactataaaaagacaagtactgaaataactaaaaaggcagtcactacaaaaccctcagcggttcatccttg |
31061400 |
T |
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| Q |
312 |
ctttcctgtcctatgatgctgattctaaaatatttcttgctttaaaataatactagtatat |
372 |
Q |
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| T |
31061401 |
gttttctgtcctatgatgctgattctaaaatatttcttgctttaaaataatactagtatat |
31061461 |
T |
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