View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1317R-Insertion-1 (Length: 1030)
Name: NF1317R-Insertion-1
Description: NF1317R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317R-Insertion-1 |
 | |
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| [»] scaffold0181 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 838; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 838; E-Value: 0
Query Start/End: Original strand, 9 - 1008
Target Start/End: Complemental strand, 46648246 - 46647239
Alignment:
| Q |
9 |
attaaccatctagcacaacataaacagtgccatacagtttgagtacactttaaattttagggactaaaatcgacaaaggtccctctttttggacacaaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
46648246 |
attaaccatctagcacaacataaacagtgccatacgttttgagtacactttaaattttagggactaaaatcgacaaaggtccctctttttggacacagaa |
46648147 |
T |
|
| Q |
109 |
tagcgacacaatgcaattggcatcatattcatatgatgctaagaagtgatggttaatgagttgcaaatatttggttaattcagttaattatgtggttaat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46648146 |
tagcgacacaatgcaattggcatcatattcatatgatgctaagaagtgatggttaatgagttgcaaatatttggttaattcagttaattatgtggttaat |
46648047 |
T |
|
| Q |
209 |
gaactgcttcaatactacattaaccacttgtattaagggtctagaagcacattgattaattggctagatattaatcgttaatactgtgttgaaaggggtt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46648046 |
gaactgcttcaatactacattaaccacttgtattaagggtctagaagcacattgattaattggctagatattaatcgttaatactgtgttgaaaggggtt |
46647947 |
T |
|
| Q |
309 |
aacaatttaatttccctaaaaaa---taattaattagtggtcaataactacacaatgaacttaatcaaccaattatttgaatgccatgagtaatttttag |
405 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46647946 |
aacaatttaatttccctaaaaaatactaattaattagtggttaataactacacaatgaacttaatcaaccaattatttgaatgccatgagtaatttttag |
46647847 |
T |
|
| Q |
406 |
aacaatgagattaagttaattaattctgcccataaaaattgacaattcattaaccacaaaacaaattgaattaaccaaacattagcatgttattaatcac |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46647846 |
aacaatgagattaagttaattaattctgcccataaaaattgacaattcattaaccacaaaacaaattgaattaaccaaacattagcatgttattaatcac |
46647747 |
T |
|
| Q |
506 |
acacatatagtaggctgaacccttcgtcttgcttaacgatattttcttaatttttctcctggttcgttgtaacatttcggattgttacgtttctcgtata |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
46647746 |
acacatatagtaggctgaacccttcgtcttgcttaacgacattttcttaatttttctcctggttcgttgtaacatttcggattgttaagtttctcgtata |
46647647 |
T |
|
| Q |
606 |
catcatgtgctacagggactttagttggtttattaattatttttcttagcctttnnnnnnntacata--nnnnnnnnnnnnnnnnatgaatgtttacttt |
703 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| |
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|
| T |
46647646 |
catcatgtgctatagggactttagttggtttattaattatttttcttagcctttaaaaaaatacatattttttttattttattttatgaatgcttacttt |
46647547 |
T |
|
| Q |
704 |
tcaaagcgttgagatgactatgtatctttttattaagaacctcactaaatattccacgatccacatgaataagaggaacaagatatttaccaagattatc |
803 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46647546 |
tcaaagcgttgagatgactatgtatctttttattaagaacctcacgaaatgttccacgatccacatgaataagaggaacaagatatttaccaagattatc |
46647447 |
T |
|
| Q |
804 |
attgttgatatctaagagtgtcactgatttgaacacttacttacgttccaatgaaacattgtgaaagaagaatatccaggttctcaaggctgagcttttg |
903 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46647446 |
attgttgagatctaagagtgtcactgatctgaacacttacttacgtttcaatgaaacattgtgaaagaagaatatccaggttctcaaggctgagcttttg |
46647347 |
T |
|
| Q |
904 |
accactaaatcaaattaaaaacacacatttatcatagtctctcaacaccatattattattatt-cacatcatttttc-acactatttctttct-cttcat |
1000 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| |
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|
| T |
46647346 |
accactaaatcaaattaaaaacacacatttatcatagtctctcaacaccatattattattattccacatcatttttcaacactatttctttctccttcat |
46647247 |
T |
|
| Q |
1001 |
gtaaccca |
1008 |
Q |
| |
|
|||||||| |
|
|
| T |
46647246 |
gtaaccca |
46647239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 899 - 960
Target Start/End: Original strand, 55514548 - 55514609
Alignment:
| Q |
899 |
ttttgaccactaaatcaaattaaaaacacacatttatcatagtctctcaacaccatattatt |
960 |
Q |
| |
|
|||| ||||||||||||||| || | ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
55514548 |
ttttaaccactaaatcaaataaagagcacacatttattatagtctctcatcaccatattatt |
55514609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 926 - 960
Target Start/End: Complemental strand, 26393953 - 26393919
Alignment:
| Q |
926 |
acacatttatcatagtctctcaacaccatattatt |
960 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
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|
| T |
26393953 |
acacatttatcatagtctctcagcaccatattatt |
26393919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 924 - 960
Target Start/End: Complemental strand, 21853473 - 21853437
Alignment:
| Q |
924 |
acacacatttatcatagtctctcaacaccatattatt |
960 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21853473 |
acacacatttatcatagtctctcagcaccatattatt |
21853437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 926 - 960
Target Start/End: Complemental strand, 15880 - 15846
Alignment:
| Q |
926 |
acacatttatcatagtctctcaacaccatattatt |
960 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
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|
| T |
15880 |
acacatttatcatagtctctcagcaccatattatt |
15846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 923 - 960
Target Start/End: Original strand, 13361679 - 13361716
Alignment:
| Q |
923 |
aacacacatttatcatagtctctcaacaccatattatt |
960 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||| |
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| T |
13361679 |
aacacacatttatcatggtctctcaacactatattatt |
13361716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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