View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317R-Insertion-2 (Length: 850)
Name: NF1317R-Insertion-2
Description: NF1317R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317R-Insertion-2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 757; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 9 - 850
Target Start/End: Original strand, 42974810 - 42975653
Alignment:
| Q |
9 |
agattcacctgcataactttccccagccatgtagaattctctatgtttgtactgaggaaatctttcaaaccaattaactagaaaaatatatgcatcctca |
108 |
Q |
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| T |
42974810 |
agattcacctgcataactttccccagccatgtagaattctctatgtttgtactgaggaaatctttcaaaccaattaactagaaaaatatatgcatcctca |
42974909 |
T |
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| Q |
109 |
gctgcaaagtcnnnnnnngttacagatcgcagatacatattaacacgtcaaatctcattgctaaaacaaaacaaatctggcactgcgagtaaatccttca |
208 |
Q |
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| T |
42974910 |
gctgcaaagtcaaaaaaagttacagatcgcagatacatattaacacgtcaaatctcattgctaaaacaaaacaaatctggcactgcgagtaaatccttca |
42975009 |
T |
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| Q |
209 |
tgggcaaaaccattttacaaacctatgcatcaccgacacaacactgacacttgtgcctacattcagttagtactagtgttgacgtgtctggtttcaatgt |
308 |
Q |
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| T |
42975010 |
tgggcaaaaccattttacaaacctatgcatcaccgacacaacactgacacttgtgcctacattcagttagtactagtgttgacgtgtctggtgtcaatgt |
42975109 |
T |
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| Q |
309 |
cggtgtctattttgtgcttaggggagtagccttgactgcccaaaacaaattcataagttttatatttagttagcctggtaatatatatttaactactcca |
408 |
Q |
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| T |
42975110 |
cggtgtctattttgtgcttaggggagtagccttgactgcccaaaacaaattcataagttttatatttagttagcctagtaatatatatttaactactcca |
42975209 |
T |
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| Q |
409 |
aacaactataagctaaaaataagtacaaacagaaaagtccaaaaattatcatgtgattaataaatttattggtcttggttagacactttcggactcttga |
508 |
Q |
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| T |
42975210 |
aacaactataagctaaaaataagtacaaacagaaaagtccaaaaattatcatgtgattaataaatttattggtcttggttagacactttcggactcttga |
42975309 |
T |
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| Q |
509 |
gcaactatagtgtttcttgcaaatagatcagctgtttaccttgaaaaagacattgttagtttgtttgttacaaagtcaactatggatgaaatttactctt |
608 |
Q |
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| T |
42975310 |
gcaactatagtgtttcttgcaaatagatcagctgtttaccttgaaaaagacattgttagtttgtttgttacaaagtcaactatggatgaaatttactctt |
42975409 |
T |
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| Q |
609 |
agacgcgttgtcgagctcaactttcctaaatag--nnnnnnnnnaaagaactttcttattatcttagtgaagttttaatttttgatttcatataagaaaa |
706 |
Q |
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| T |
42975410 |
agacgcgttgtcgagctcaactttcctaaatagtttttttttttaaagaactctcttattatcttagtgaagttttaattttcgatttaatataagaaaa |
42975509 |
T |
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| Q |
707 |
aattcttctgaaattttccgcgtatagtttttcccccagttatcggttaaatttaatatattagtttttagatgtagtttattcattcttctttatattt |
806 |
Q |
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| T |
42975510 |
aattcttctgaaattttccgcgtatagtttttcccccagttatcggttaaacttaatatattagtttttagatgtagtttattcattcttctttatattt |
42975609 |
T |
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| Q |
807 |
ggccaattggccccctcgtaaaatttatgttagctccgtcattg |
850 |
Q |
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| T |
42975610 |
ggccaattggccccctcgtaaaatttatgttagctccatcattg |
42975653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 42981275 - 42981503
Alignment:
| Q |
8 |
aagattcacctgcataactttccccagccatgtagaattctctatgtttgtactgaggaaatctttcaaaccaattaactagaaaaatatatgcatcctc |
107 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42981275 |
aagatttacctgcataactttccccagcgatgtagaattctctatgcttatattgaggaaatctttcaaaccaattaactagaaagatatatgcatcctc |
42981374 |
T |
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| Q |
108 |
agctgcaaagtcnnnnnnngttacagatcgcagatacatattaacacgtcaaatctcattgctaaaacaaaacaaatctggcactgcgagtaaatccttc |
207 |
Q |
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| T |
42981375 |
agctgcaaagtcaagaaac---tcagatctcagatacaaactaacatgtcaaatctcattgctaaaacaaaa-----ctggcactaggagtaaatccttc |
42981466 |
T |
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| Q |
208 |
atgggcaaaaccattttacaaacctatgcatcaccgaca |
246 |
Q |
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| T |
42981467 |
atgagcaagacca--ttacaaacctatgcaacactgaca |
42981503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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