View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1317R-Insertion-3 (Length: 822)

Name: NF1317R-Insertion-3
Description: NF1317R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1317R-Insertion-3
NF1317R-Insertion-3
[»] chr5 (2 HSPs)
chr5 (207-812)||(43409423-43410033)
chr5 (9-177)||(43409222-43409390)


Alignment Details
Target: chr5 (Bit Score: 558; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 207 - 812
Target Start/End: Original strand, 43409423 - 43410033
Alignment:
Q  207 tcttcagctgatcatgatcatgatcaattcaccttcccaacaacaaatagtcacatgccttcttctgcttctgaaccactatcacaagttgatgcagttt 306  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43409423 tcttcagctgaccatgatcatgatcaattcaccttcccaacaacaaatagttacatgccttcttctgcttctgaaccactatcacaagttgatgcagttt 43409522  T
Q  307 caggctgttcaaccaaagacacttcatcatcatgttcttggattgcacatatgatggaggctcaaaacaaggggaaaggcgtctccgtgtcattggaata 406  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43409523 caggttgttcaaccaaagacacttcatcatcatgttcttggattgcacatatgatggaggctcagaacaaggggaaaggcgtctccgtgtcattggaata 43409622  T
Q  407 ccttcaagagcctaaagaggaattcaaagtcacaacctgcaactgggacagggagagggaggacaatgtcttttcagaattcggccaagtactgcagcag 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43409623 ccttcaagagcctaaagaggaattcaaagtcacaacctgcaactgggacagggagagggaggacaatgtcttttcagaattcggccaagtactgcagcag 43409722  T
Q  507 cagcagcatgatcagagcagtaattcaagggcaagtgttgtaagtgtagaagctggtgaagaatctcctggtgcctgtggtcgccggtcgtcttcctctt 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43409723 cagcagcatgatcagagcagtaattcaagggcaagtgttgtaagtgtagaagctggtgaagaatctcctggtgcctgtggtcgccggtcgtcttcttctt 43409822  T
Q  607 cgagtgggagaaagtccggggacaagcgaagaaccaaggcggagaagactataagcttgccggttctgagacaatactttgccggaagcctaaaggacgc 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43409823 cgagtgggagaaagtccggggacaagcgaagaaccaaggcggagaagactataagcttgccggttctgagacaatactttgccggaagcctaaaggacgc 43409922  T
Q  707 tgcaaagagcatcggtggtaagtgacttgt-aaattcaatttcagtt----ttaattaattagttaaataaaactatgtcatggatattattatccaaca 801  Q
     ||||||||||||||||||||||||||||| ||||||||||||||||    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43409923 cgcaaagagcatcggtggtaagtgacttgtaaaattcaatttcagttttaattaattaattaattaaataaaactatgtcatggatattattatccaaca 43410022  T
Q  802 actcgatctca 812  Q
    |||||||||||    
T  43410023 actcgatctca 43410033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 9 - 177
Target Start/End: Original strand, 43409222 - 43409390
Alignment:
Q  9 gccattccattgaggagtgtctacactggttctgctgctgattttgttttggaatttttccttcctaaagattgtcgtgacaccgaacagcagaaacaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43409222 gccattccattgaggagtgtctacactggttctgctgctgattttgttttggaatttttccttcctaaagattgtcgtgacaccgaacagcagaaacaaa 43409321  T
Q  109 tgctaaactcattgtcccttgttgttcaacaagcttgtaggagcttgcatttgcatgtcgtcatggacg 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43409322 tgctaaactcattgtcccttgttgttcaacaagcttgtaggagcttgcatttgcatgtcgtcatggacg 43409390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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