View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1317R-Insertion-4 (Length: 622)
Name: NF1317R-Insertion-4
Description: NF1317R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317R-Insertion-4 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 127 - 622
Target Start/End: Complemental strand, 37025532 - 37025035
Alignment:
| Q |
127 |
ttttctccttcttattaatctctctcgtgtaacttcatcctccaccatcgtgttcgtcttccaccattgttttcatcctccaccatcggccacaaaaaag |
226 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37025532 |
ttttctctttcttattaatctctctcgtgttacttcatcctccaccatcgtgttcatcctccaccatcgttttcatcctccaccatcggccacaaaaaag |
37025433 |
T |
|
| Q |
227 |
cacacaaacttccaattttacccaacaacttcaagctctcttcaaccctc--aatgtttaatttcgttgttccacaaaaccaccaacacatatcattcaa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37025432 |
cacacaaacttccaattttacccaacaacttcaagctctcttcaaccctctcaatgtttaatttcgttgttccacaaaaccaccaacacatatcattcaa |
37025333 |
T |
|
| Q |
325 |
aacaaaagcatcaacacataccattnnnnnnnncagatagtgcataaaacaagttgaaaaattggatctgatttatcagcaaattttgatggttttgaga |
424 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37025332 |
aacaaaagcaccaacacataccattaaaaaaaacagatagtgcataaaacaagttgaaaaattggatctgatttatcggcaaattttgatggttttgaga |
37025233 |
T |
|
| Q |
425 |
aaaggagttcatccattttttctgcgaattattagtccagtagattgtatagtagaaaaaatagcccagttaatttcaccattaaaacattcaaggtctt |
524 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37025232 |
aaaggagttcatccattttttctgcaaattattagtccagtggattgcatagtagaaaaaatagcccagttaatttcaccattaaaacattcaaggtctt |
37025133 |
T |
|
| Q |
525 |
tcaacaaaaaagagacgatggaagctagactaaaattactcaaatcataatgggtattatccaagtttaattcaaatgatgcataacaggtctttcga |
622 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37025132 |
tcaacaaaaaagagacgatggaagatagactaaaattactcaaatcataataggtattatccaagtttaattcaaatgatgcataacaggtctttcga |
37025035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 37025650 - 37025611
Alignment:
| Q |
9 |
gaactctcacccaacacatcattcttacactcatccaatc |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37025650 |
gaactctcacccaacacatcattcttacactcatccaatc |
37025611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 33861587 - 33861618
Alignment:
| Q |
9 |
gaactctcacccaacacatcattcttacactc |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
33861587 |
gaactctcacccaacacatcattcttacactc |
33861618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 29668373 - 29668405
Alignment:
| Q |
9 |
gaactctcacccaacacatcattcttacactca |
41 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
29668373 |
gaactcttacccaacacatcattcttacactca |
29668405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 36384438 - 36384400
Alignment:
| Q |
9 |
gaactctcacccaacacatcattcttacactcatccaat |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
36384438 |
gaactctcacccaacacatcattcttacacccaaccaat |
36384400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 39823015 - 39822978
Alignment:
| Q |
10 |
aactctcacccaacacatcattcttacactcatccaat |
47 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
39823015 |
aactctcacccaacacatcattcttacacccaaccaat |
39822978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 9305350 - 9305314
Alignment:
| Q |
11 |
actctcacccaacacatcattcttacactcatccaat |
47 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
9305350 |
actctcacccaacacattattcttacactcaaccaat |
9305314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 54513995 - 54514023
Alignment:
| Q |
9 |
gaactctcacccaacacatcattcttaca |
37 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
54513995 |
gaactctcacccaacacatcattcttaca |
54514023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University