View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317R-Insertion-5 (Length: 607)
Name: NF1317R-Insertion-5
Description: NF1317R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317R-Insertion-5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 9 - 607
Target Start/End: Original strand, 33220246 - 33220844
Alignment:
| Q |
9 |
gatggtatggctgtcgaaccaggtgatgatgaccacaatgactttgacagtctctgccatagtaaagaacatgtttctgaatcttgtgaaggtgcagctt |
108 |
Q |
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| T |
33220246 |
gatggtatggctgtcgaaccaggcgatgatgaccacaatgactttgacagtctctgccatagtaaagaacatgtttctgaatcttgtgaaggtgcagttt |
33220345 |
T |
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| Q |
109 |
cagttttgcacaccttgtagcaatgtagaactctcttgtgtaggttttcttcttcttctgaatgaactatggttttgagaccatgataaggattataaca |
208 |
Q |
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| T |
33220346 |
cagttttgcacaccttgtagcaatgtagaactctcttgtgtaggttttcttcttcttctgaatgaactatggttttgagaccatgataaggattataaca |
33220445 |
T |
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| Q |
209 |
ataatatccattgttgttacaacttcgtcttgcccttaatgtgtagttgtatagagatgtagctattttttctgctttgcttgataaatactccttcagt |
308 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33220446 |
ataatatccattattgttacaacttcgtcttgcccttaatgtgtagttgtatagagatgtagctattttttctgctttgcttgataaatactcgttcagt |
33220545 |
T |
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| Q |
309 |
gtatccatttcttagttttgtctctagaaaggaaactaaagttggtaatttctcactttaccattatacccttgaaattgttttaccataataaaaacat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33220546 |
gtatccatttcttagttttgtctctagaaaggaaactaaagttggtaatttctcactttaccattatacccttgaaattgttttaccataataaaaacat |
33220645 |
T |
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| Q |
409 |
gaaattggtcagtgatgattatcctgaaacaaatgaaaaagaaaagattaggcttgcattggtatgatatagctggcagtgaaataaatataatttggat |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33220646 |
gaaattggtcagtgatgattatcctgaaacaaatgaaaaagaaaagattaggcttgcattggtaagatatagctggcagtgaaataaatataatttggat |
33220745 |
T |
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| Q |
509 |
atatttgctattgtaataaatgcatcatatttggaaaatcaaactaatatgataaggcctaaggtgtttgcagctattgatcgaatctaatcatatgtg |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33220746 |
atatttgctattgtaataaatgcatcatatttggaaaatcaaactaatatgataaggcctaaggtgtttgcagctattgatcgaatctaatcacatgtg |
33220844 |
T |
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