View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_high_1 (Length: 661)
Name: NF1317_high_1
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 29 - 649
Target Start/End: Complemental strand, 35315781 - 35315162
Alignment:
| Q |
29 |
aattgttacaaggacatccaacttgtcacatcatcaaaaagcatacataagtgaaataaagagatatttttcctatattaaacccttacatatttatatt |
128 |
Q |
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| T |
35315781 |
aattgttacaaggacatccaacttgtcacatcat-aaaaagcatgcatatgtgaaataaagagacatttttcctatattaaactcttacatatttatatt |
35315683 |
T |
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| Q |
129 |
ttaattccttttcaacagtttaccgtaaggtttttcaatcaaagaaacatggaacttttagtnnnnnnnn-ctggtgaacgaattaatcctttgatcagt |
227 |
Q |
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| T |
35315682 |
ttaattccttttcaatagtttaccgtaaggtttttcaatcaaagaaacatggaacttttagtaaaaaaaaactggtgaacgaattaatcctttgatcagt |
35315583 |
T |
|
| Q |
228 |
caaaagaaaggagatagcattgtatgtattcttttgttttcatatacatttatatatcaatatcaacattagctttcattatcaaatacactaaattaac |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35315582 |
caaaagaaaggagatagcattgtatgtattcttttgttttaatatacatttatatatcaatatcaacattagctttcattatcaaatacactaaattaac |
35315483 |
T |
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| Q |
328 |
atgcttagtgattggagggaccactctcccttgttcactcggtttctaacttttccttaatatgctccttgtctcccttttcctctcactattgactaat |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35315482 |
atgcttagtgattggagggaccactctcccttgttcactcggtttctaacttttccttaatatgctccttgtctcccttttcctctcactattgactcat |
35315383 |
T |
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| Q |
428 |
tatttgattcaagattattattattaatttgcacatagttgagtgttatcctctatcatatttcctattgagcatgtcaaatccaccctctttcagtgga |
527 |
Q |
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| T |
35315382 |
tatttgattcaagattatt-gtattaatttgcgcatagttgagtgttatcctctatcatatttcctattgagcatgtcaaatccaccctctttcagtggg |
35315284 |
T |
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| Q |
528 |
ggataatttgtgcttctctaggtagttccaataaccattactaattaagaatatcagaattctgatcattaggtaaatatatatccacaccatttatgaa |
627 |
Q |
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| T |
35315283 |
gaataatttgtgcttctctaggtagttccaataaccattactaattaagaatatcagaattctgatcattaggtaaatatatatccacaccatttatgaa |
35315184 |
T |
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| Q |
628 |
cttgtctttttcctcctagtat |
649 |
Q |
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|||||||||||||||||||||| |
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| T |
35315183 |
cttgtctttttcctcctagtat |
35315162 |
T |
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