View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_high_11 (Length: 382)
Name: NF1317_high_11
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 34324549 - 34324831
Alignment:
| Q |
30 |
tagagagccattcaaaaacatttgaaaatcacatgaaatataagaatggccgtaagcttataaagagcgatgttgatatatcaccagaaaagagaaggnn |
129 |
Q |
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| T |
34324549 |
tagagaaccattcaaaaacatttgaaaatcacatgaaatataagaatgaccgtaagcttataaagagcgatgttgatatatcaccagaaaagagaaggaa |
34324648 |
T |
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| Q |
130 |
nnnnnnnnnnnnn--tcaacgtcactctttagaaatttaagctaatagtcattcttgtttttataagtgaaatggtgacatgattggggtgaaatccacc |
227 |
Q |
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| T |
34324649 |
aaaaaaaataaaaaatcaacgtcactctttagaaatttaagctaatagtcattcttgtttttataagtgaaatggtgacatgattggggtgaaaaacacc |
34324748 |
T |
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| Q |
228 |
aaagcaaagagaaatgaatgaactaatgtagtattaagtagtttttaaatgttgttctattgtggacaatcaatcaaatgatc |
310 |
Q |
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| T |
34324749 |
aaagcaaagagaaatgaatgaactaatgtagtatcaagtagtttttaaatgttgttctattgtggacaatcaatcaaatgatc |
34324831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 367
Target Start/End: Original strand, 34324830 - 34324872
Alignment:
| Q |
325 |
tcattctttatagaccaatttttgaacatttttgtttataggc |
367 |
Q |
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| T |
34324830 |
tcattctttatagaccattttttaaacatttttgtttataggc |
34324872 |
T |
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