View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_high_20 (Length: 304)
Name: NF1317_high_20
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 80 - 299
Target Start/End: Complemental strand, 10103113 - 10102894
Alignment:
| Q |
80 |
gattattgccagacatataattgcaatgacatttctgcattattcctcttttatgttgtatatcttttggaattttcatttatacaagggatcctatttg |
179 |
Q |
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| T |
10103113 |
gattattgccagacatataattgcaatgacatttctgcattattcctcttttatgttgtatatcttttggaattttcatttatataagggatcctatttg |
10103014 |
T |
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| Q |
180 |
gttttgatttaacatttcagaagcttctccatttttgtttagttactaaaaaagaaatggacacaataatgctgtcaaaactctttcatttggacatagc |
279 |
Q |
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| T |
10103013 |
gttttgatttaacatttcagaagcttctccatttttgtttagttactaaaaaagaaatggacacaataatgctgtcaaaactctttcatttggacatagc |
10102914 |
T |
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| Q |
280 |
cttttgcgatattgttggag |
299 |
Q |
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| T |
10102913 |
cttttgcgattttggtggag |
10102894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 10089859 - 10089795
Alignment:
| Q |
174 |
tatttggttttgatttaacatttcagaagcttctccatttttgtttagttactaaaaaagaaatg |
238 |
Q |
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| T |
10089859 |
tatttggttttgatttaaaatttcagaagcttctccatttttgtttagttgctggaaaagaaatg |
10089795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 10101678 - 10101560
Alignment:
| Q |
101 |
tgcaatgacatttctgcattattcctcttttatgttgtatatcttttggaattttcatttatacaagggatcctatttggttttgatttaacatttcaga |
200 |
Q |
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| T |
10101678 |
tgcaatgacatttgtgcattattcctctt--atgatctaaatctttttgaactttcttgtatacaagtgatcatatttggttttgatttaaaatttcata |
10101581 |
T |
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| Q |
201 |
agcttctccatttttgtttagtt |
223 |
Q |
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| T |
10101580 |
agct--tccatgtttgtttagtt |
10101560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 10103169 - 10103132
Alignment:
| Q |
30 |
aagtagtcatctacaatatattctgccttttgtgcaatg |
68 |
Q |
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| T |
10103169 |
aagtagtcatctacaata-attctgccttttgtgcaatg |
10103132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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