View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_high_25 (Length: 277)
Name: NF1317_high_25
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_high_25 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 123229 - 123426
Alignment:
| Q |
7 |
cttccttgactgcttgaactgaacaactgtcccaagatggctgccacttaactttacaaaccaactttctattttccaatcggtccagaagaattggcta |
106 |
Q |
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| T |
123229 |
cttccttgactgcttgaactgaacaactgtcccaagatggctgccacttaactttacaaaccaactttctattttccaattggtccagatgaattggata |
123328 |
T |
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| Q |
107 |
ttccaaaggatttgtgacaccagcctaattgcaagtgttattccaaaagttgtggataatagattaagactataatataaaaatcaataaatagaaac |
204 |
Q |
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| T |
123329 |
ttccaaaggatttgtgacaccagcctaattgcaagtgttattccaaaagttgtggataataaattaagactataatataaaaatcaataaatagaaac |
123426 |
T |
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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 10386982 - 10387053
Alignment:
| Q |
197 |
atagaaacaccacaggcagcatttaccgcctgaatgcattgccttcacctccagatctgccttgagaataat |
268 |
Q |
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| T |
10386982 |
atagaaacaccacaggcagcatttaccgcctaaatgcattgccttcacctccagatctgccttgagaataat |
10387053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 23697012 - 23697143
Alignment:
| Q |
9 |
tccttgactgcttgaactgaacaactgtcccaagatggctgccacttaactttacaaaccaactttctattttccaatcggtccagaagaattggctatt |
108 |
Q |
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| T |
23697012 |
tccttgattgcttgcactgaacaactgtcccaagttggctgccacttcactttacagacgacatttcttttttccaattagtccagtagtattggatatt |
23697111 |
T |
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| Q |
109 |
ccaaaggatttgtgacaccagcctaattgcaa |
140 |
Q |
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| T |
23697112 |
ccaatggatttgtgacaccagcctaaatgcaa |
23697143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 22078005 - 22078130
Alignment:
| Q |
7 |
cttccttgactgcttgaactgaacaactgtcccaagatggctgccacttaactttacaaaccaactttctattttccaatcggtccagaagaattggcta |
106 |
Q |
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||||||||| ||||||||| ||||| |||||||||| ||||||||| ||||||||||||| |||| ||| ||||||||| |||||| | |||| || |
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| T |
22078005 |
cttccttgattgcttgaaccgaacagctgtcccaagttggctgccatttaactttacaaataaactctctgttttccaattggtccaagtgtgttgg-ta |
22078103 |
T |
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| Q |
107 |
ttccaaaggatttgtgacaccagccta |
133 |
Q |
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| T |
22078104 |
ttccagaggatttgtgacaccagccta |
22078130 |
T |
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