View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_high_29 (Length: 272)
Name: NF1317_high_29
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 3423449 - 3423624
Alignment:
| Q |
30 |
atatcgtatcatatttgttatgtgataattcaatcttggttaaagtttattagttaactaacttggagagttagttgagttagtttctaactgttatgtg |
129 |
Q |
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| T |
3423449 |
atatcgtatcatatttgttatgtgataattcaatcttggttaaagtttattagttaactaacttggagagttagttgagttagtttctaactgttatgtg |
3423548 |
T |
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| Q |
130 |
gatttcaagtaacaggttggttaagacttattagttgatatacttgctatccaagcaagctaaatggttgtaattc |
205 |
Q |
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| T |
3423549 |
gatttcaagtaacaggttggttaagacttattagttgatatacttgctatacaagcaagctaaatgagtgtaattc |
3423624 |
T |
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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 109345 - 109270
Alignment:
| Q |
136 |
aagtaacaggttggttaagacttattagttgatatacttgctatccaagcaagctaaatggttgtaattcattgta |
211 |
Q |
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|||||||| |||| |||||| || |||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
109345 |
aagtaacatgttgattaagatttgttagttgatatacttgctatataagcaagttaaatggttgtaattcattgta |
109270 |
T |
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