View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1317_high_33 (Length: 251)

Name: NF1317_high_33
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1317_high_33
NF1317_high_33
[»] chr6 (1 HSPs)
chr6 (9-251)||(20642969-20643212)
[»] chr4 (3 HSPs)
chr4 (13-251)||(33246043-33246281)
chr4 (13-173)||(42469447-42469604)
chr4 (13-188)||(13775497-13775669)
[»] chr8 (2 HSPs)
chr8 (13-173)||(4878340-4878497)
chr8 (13-188)||(36378261-36378433)
[»] chr7 (7 HSPs)
chr7 (13-173)||(3933944-3934101)
chr7 (14-173)||(42679586-42679742)
chr7 (9-188)||(21767884-21768063)
chr7 (13-232)||(19788097-19788316)
chr7 (13-146)||(16533873-16534006)
chr7 (13-146)||(16631656-16631789)
chr7 (13-125)||(8732252-8732364)
[»] chr2 (3 HSPs)
chr2 (13-188)||(31488101-31488273)
chr2 (13-125)||(42276614-42276726)
chr2 (17-145)||(39817086-39817214)
[»] chr1 (3 HSPs)
chr1 (37-188)||(4820113-4820264)
chr1 (37-188)||(4831913-4832064)
chr1 (13-125)||(10910347-10910459)
[»] chr5 (1 HSPs)
chr5 (13-188)||(11850985-11851157)
[»] chr3 (1 HSPs)
chr3 (13-188)||(4532181-4532354)
[»] scaffold1361 (1 HSPs)
scaffold1361 (13-125)||(1175-1287)
[»] scaffold0050 (1 HSPs)
scaffold0050 (9-188)||(30573-30751)


Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 20642969 - 20643212
Alignment:
Q  9 gaataatatgttggtgctgacatttgtgaagtgttt-gaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaa 107  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20642969 gaataatatgttggtgctgacatttgtgaagtgttttgaagaagagggaaatatatatccaatatatgatgatgaacatggtcccgatgacattcatgaa 20643068  T
Q  108 gtctttgaaaaagaggagcatgacaaaccaatatatgataaagaatatattcttgctggatatggtaaatcttgggaggttnnnnnnngcttgcaaacaa 207  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||       ||||||||||||    
T  20643069 gtctttgacaaagaggagcatgacaaaccaatatatgatgaagaatatattcttgttgaatatggtaaatcttgggaggttaaaaaaagcttgcaaacaa 20643168  T
Q  208 cagcagtcaaagaagaaccatggctaggatatgatatctttcaa 251  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  20643169 cagcagccaaagaagaaccatggctaggatatgatatctttcaa 20643212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 33246043 - 33246281
Alignment:
Q  13 aatatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtctt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  33246043 aatatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatagatctaatatatgatgatgaacatagtcccgatgacattcatgaagtctt 33246142  T
Q  113 tgaaaaagaggagcatgacaaaccaatatatgataaagaatatattcttgctggatatggtaaatcttgggaggttnnnnnnngcttgcaaacaacagca 212  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||||||||| ||||||||||||||| ||||||       |||||||||||||||||    
T  33246143 tgaaaaagaggagcatgacaacccaatatatgacgaagaatatattcttgctgaatatggtaaatcttgagaggttaaaaaaagcttgcaaacaacagca 33246242  T
Q  213 gtcaaagaagaaccatggctaggatatgatatctttcaa 251  Q
      |||||||||||||||||||||||||||||| ||||||    
T  33246243 accaaagaagaaccatggctaggatatgatatttttcaa 33246281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 42469604 - 42469447
Alignment:
Q  13 aatatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtctt 112  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||| ||||||||||||   | ||||||||||||||||||||||||  ||    
T  42469604 aatatgttggtgctgatatttgtgaagtgtttgacgaagagggaaacatagatccaatatatgatga---atatggtcccgatgacattcatgaagcatt 42469508  T
Q  113 tgaaaaagaggagcatgacaaaccaatatatgataaagaatatattcttgctggatatggt 173  Q
     |||||||||||||||||| |||||||||||||  |||||||| ||||||||| |||||||    
T  42469507 ggaaaaagaggagcatgacgaaccaatatatgacgaagaatatgttcttgctgaatatggt 42469447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 13775497 - 13775669
Alignment:
Q  13 aatatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtctt 112  Q
    |||||||||||| |||| |||||||||  | |||||||||||||||   | ||| |||||   |||||||| ||||||| | | |||||||||||| |||    
T  13775497 aatatgttggtgttgacttttgtgaagaatgtgaagaagagggaaaaggagatccaatat---atgatgaatatggtcctggtaacattcatgaagcctt 13775593  T
Q  113 tgaaaaagaggagcatgacaaaccaatatatgataaagaatatattcttgctggatatggtaaatcttgggaggtt 188  Q
    ||||||||||||||||||  |||||||||||||  || ||||||||| ||||| ||||||| |||||| |||||||    
T  13775594 tgaaaaagaggagcatgatgaaccaatatatgacgaaaaatatattcatgctgaatatggtgaatctttggaggtt 13775669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 4878340 - 4878497
Alignment:
Q  13 aatatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtctt 112  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||| ||||||||||||   | |||||| ||||||||||||||||| |||    
T  4878340 aatatgttggtgctgatatttgtgaagtgtttgacgaagagggaaacatagatccaatatatgatga---aaatggtctcgatgacattcatgaagcctt 4878436  T
Q  113 tgaaaaagaggagcatgacaaaccaatatatgataaagaatatattcttgctggatatggt 173  Q
    |||||| ||||||||| |  |||||||||||||| |||||||| ||||||||| |||||||    
T  4878437 tgaaaaggaggagcataatgaaccaatatatgatgaagaatatgttcttgctgaatatggt 4878497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 36378433 - 36378261
Alignment:
Q  13 aatatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtctt 112  Q
    |||||||||||| |||| ||||||||| || |||||||||||||||   | ||| ||||||||   ||||| ||||||||| | |||||||||||| |||    
T  36378433 aatatgttggtgttgacttttgtgaagagtgtgaagaagagggaaaaggagatccaatatatg---atgaatatggtcccggtaacattcatgaagcctt 36378337  T
Q  113 tgaaaaagaggagcatgacaaaccaatatatgataaagaatatattcttgctggatatggtaaatcttgggaggtt 188  Q
    ||||||||||||||||||  ||||||||||||| ||| ||||||||| ||||| ||||||| |||||| |||||||    
T  36378336 tgaaaaagaggagcatgatgaaccaatatatgacaaaaaatatattcctgctgaatatggtgaatctttggaggtt 36378261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 3933944 - 3934101
Alignment:
Q  13 aatatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtctt 112  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||| ||||||||||||   | |||||| ||||||||||||||||| |||    
T  3933944 aatatgttggtgctgatatttgtgaagtgtttgacgaagagggaaacatagatccaatatatgatga---aaatggtctcgatgacattcatgaagcctt 3934040  T
Q  113 tgaaaaagaggagcatgacaaaccaatatatgataaagaatatattcttgctggatatggt 173  Q
    |||||| ||||||||| |  |||||||||||||| |||||||| ||||||||| |||||||    
T  3934041 tgaaaaggaggagcataatgaaccaatatatgatgaagaatatgttcttgctgaatatggt 3934101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 42679742 - 42679586
Alignment:
Q  14 atatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtcttt 113  Q
    |||||||||| |||| |||||||||||||||||||||||||||||   | ||| ||||||||   ||||| ||||||||||||||||||||||||  ||     
T  42679742 atatgttggttctgatatttgtgaagtgtttgaagaagagggaaaaggagatccaatatatg---atgaatatggtcccgatgacattcatgaagcattg 42679646  T
Q  114 gaaaaagaggagcatgacaaaccaatatatgataaagaatatattcttgctggatatggt 173  Q
    |||||||||||||||||| |||||||||||||  |||||||| ||||||||| |||||||    
T  42679645 gaaaaagaggagcatgacgaaccaatatatgacgaagaatatgttcttgctgaatatggt 42679586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 21768063 - 21767884
Alignment:
Q  9 gaataatatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaag 108  Q
    ||||||||||||| || |||  || ||||||||||| ||||||||||||| | | |   |||||||||||||||| ||||||| ||||||||||||||||    
T  21768063 gaataatatgttgatgttgaatttcgtgaagtgtttaaagaagagggaaacagagaaataatatatgatgatgaatatggtcctgatgacattcatgaag 21767964  T
Q  109 tctttgaaaaagaggagcatgacaaaccaatatatgataaagaatatattcttgctggatatggtaaatcttgggaggtt 188  Q
    | ||||||||||||||| ||||| |||||||||||||  |||||||| ||| ||||| ||||||  |||||| |||||||    
T  21767963 tgtttgaaaaagaggagaatgacgaaccaatatatgacgaagaatatcttcctgctgaatatggagaatctttggaggtt 21767884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 19788097 - 19788316
Alignment:
Q  13 aatatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtctt 112  Q
    |||||| | |||||||||||||||||| |||||||||||||||| | ||| ||| |||||||||||||||| ||||| | |||||||| |||||||| ||    
T  19788097 aatatgctagtgctgacatttgtgaagcgtttgaagaagagggatacatagatccaatatatgatgatgaatatggttctgatgacatccatgaagtttt 19788196  T
Q  113 tgaaaaagaggagcatgacaaaccaatatatgataaagaatatattcttgctggatatggtaaatcttgggaggttnnnnnnngcttgcaaacaacagca 212  Q
    |||||| || ||  | ||  || ||||||||||| |||||||| ||||||||| ||||||| |||||| |||||||       |||||||||||||| ||    
T  19788197 tgaaaaggaagataaggatgaatcaatatatgatgaagaatatgttcttgctgaatatggtgaatctttggaggttaaaagaagcttgcaaacaacaaca 19788296  T
Q  213 gtcaaagaagaaccatggct 232  Q
      |||||||| || ||||||    
T  19788297 tccaaagaaggactatggct 19788316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 16534006 - 16533873
Alignment:
Q  13 aatatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtctt 112  Q
    ||||||||||| || ||||||||||||||||| ||||||||||| |   | ||| |||||||||||||||| ||| || ||| ||||||  |||||| ||    
T  16534006 aatatgttggttctaacatttgtgaagtgtttaaagaagagggagaaggagatccaatatatgatgatgaatatgttcacgacgacattactgaagtgtt 16533907  T
Q  113 tgaaaaagaggagcatgacaaaccaatatatgat 146  Q
    ||||||||||||| | ||| ||||| ||||||||    
T  16533906 tgaaaaagaggagaaggacgaaccactatatgat 16533873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 16631656 - 16631789
Alignment:
Q  13 aatatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtctt 112  Q
    ||||||||||| || ||||||||||||||||| ||||||||||| |   | ||| |||||||||||||||| ||| || ||| ||||||  |||||| ||    
T  16631656 aatatgttggttctaacatttgtgaagtgtttaaagaagagggagaaggagatccaatatatgatgatgaatatgttcacgacgacattactgaagtgtt 16631755  T
Q  113 tgaaaaagaggagcatgacaaaccaatatatgat 146  Q
    ||||||||||||| | ||| ||||| ||||||||    
T  16631756 tgaaaaagaggagaaggacgaaccactatatgat 16631789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 8732364 - 8732252
Alignment:
Q  13 aatatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtctt 112  Q
    ||||||||||| |||||||||||||||||||| ||||||| ||||| |   ||| |||  |||||| |||||||| ||| ||||| ||||||||||| ||    
T  8732364 aatatgttggtactgacatttgtgaagtgtttaaagaagaaggaaacaacgatccaatgaatgatgttgaacatgatcctgatgatattcatgaagtgtt 8732265  T
Q  113 tgaaaaagaggag 125  Q
    |||||||||||||    
T  8732264 tgaaaaagaggag 8732252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 31488101 - 31488273
Alignment:
Q  13 aatatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtctt 112  Q
    |||||||||||| |||| ||||||||| || |||||||||||||||   | ||| |||||   |||||||| ||||||||| | |||||||||||| |||    
T  31488101 aatatgttggtgttgacttttgtgaagagtgtgaagaagagggaaaaggagatccaatat---atgatgaatatggtcccggtaacattcatgaagcctt 31488197  T
Q  113 tgaaaaagaggagcatgacaaaccaatatatgataaagaatatattcttgctggatatggtaaatcttgggaggtt 188  Q
    ||||||||||||||||||  ||||||||||||| ||| ||||||||| ||||| ||||||| |||||| |||||||    
T  31488198 tgaaaaagaggagcatgatgaaccaatatatgacaaaaaatatattcctgctgaatatggtgaatctttggaggtt 31488273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 42276726 - 42276614
Alignment:
Q  13 aatatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtctt 112  Q
    ||||||||||| |||||||||||||||||||| ||||||| ||||| |   ||| |||  |||||| |||||||| ||| ||||| ||||||||||| ||    
T  42276726 aatatgttggtactgacatttgtgaagtgtttaaagaagaaggaaacaacgatccaatgaatgatgttgaacatgatcctgatgatattcatgaagtgtt 42276627  T
Q  113 tgaaaaagaggag 125  Q
    |||||||||||||    
T  42276626 tgaaaaagaggag 42276614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 39817214 - 39817086
Alignment:
Q  17 tgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtctttgaa 116  Q
    |||||||||||| |||| |||| ||| | || ||||||||||   | ||| ||||||||||| |||| ||| ||||||||||||||||||| | ||||||    
T  39817214 tgttggtgctgatatttttgaaatgtctaaataagagggaaaagaaaatccaatatatgatgttgaatatgttcccgatgacattcatgaattgtttgaa 39817115  T
Q  117 aaagaggagcatgacaaaccaatatatga 145  Q
    ||||||||| || || | |||||||||||    
T  39817114 aaagaggagaataacgagccaatatatga 39817086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 4820113 - 4820264
Alignment:
Q  37 aagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtctttgaaaaagaggagcatgacaaacc 136  Q
    |||||||| ||||||| ||||| | ||||| |||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  4820113 aagtgtttaaagaagatggaaacaaatatctaatatatgatgatgagtatggtcccgatgacattcatgaagtgtttgaaaaagaggagaatgacaaacc 4820212  T
Q  137 aatatatgataaagaatatattcttgctggatatggtaaatcttgggaggtt 188  Q
    |||||| ||  || ||||| ||| ||||| ||||||  |||||| |||||||    
T  4820213 aatatacgacgaataatatcttcctgctgaatatggcgaatctttggaggtt 4820264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 4831913 - 4832064
Alignment:
Q  37 aagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtctttgaaaaagaggagcatgacaaacc 136  Q
    |||||||| ||||||| ||||| | ||||| |||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  4831913 aagtgtttaaagaagatggaaacaaatatctaatatatgatgatgagtatggtcccgatgacattcatgaagtgtttgaaaaagaggagaatgacaaacc 4832012  T
Q  137 aatatatgataaagaatatattcttgctggatatggtaaatcttgggaggtt 188  Q
    |||||| ||  || ||||| ||| ||||| ||||||  |||||| |||||||    
T  4832013 aatatacgacgaataatatcttcctgctgaatatggcgaatctttggaggtt 4832064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 10910347 - 10910459
Alignment:
Q  13 aatatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtctt 112  Q
    ||||||||||| |||||||||||||||||||| ||||||| ||||| |   ||| |||  |||||| |||||||| ||| ||||| ||||||||||| ||    
T  10910347 aatatgttggtactgacatttgtgaagtgtttaaagaagaaggaaacaacgatccaatgaatgatgttgaacatgatcctgatgatattcatgaagtgtt 10910446  T
Q  113 tgaaaaagaggag 125  Q
    |||||||||||||    
T  10910447 tgaaaaagaggag 10910459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 11851157 - 11850985
Alignment:
Q  13 aatatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtctt 112  Q
    |||||||||||| |||| ||||||||| || || ||||||| ||||   | ||| ||||||||   ||||| |||||| || | |||||||||||| |||    
T  11851157 aatatgttggtgttgacttttgtgaagagtgtgcagaagagcgaaaaggagatccaatatatg---atgaatatggtctcggtaacattcatgaagcctt 11851061  T
Q  113 tgaaaaagaggagcatgacaaaccaatatatgataaagaatatattcttgctggatatggtaaatcttgggaggtt 188  Q
    ||||||||||||||||||  ||||||||||||| ||| ||||||||| ||||| ||||||| |||||| |||||||    
T  11851060 tgaaaaagaggagcatgatgaaccaatatatgacaaaaaatatattcctgctgaatatggtgaatctttggaggtt 11850985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 4532181 - 4532354
Alignment:
Q  13 aatatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatg-acattcatgaagtct 111  Q
    |||||||||||| |||| |||||||||  | |||||||||||||||   | ||| |||||   |||||||| ||||||| | || |||||||||||| ||    
T  4532181 aatatgttggtgttgacttttgtgaagaatgtgaagaagagggaaaaggagatccaatat---atgatgaatatggtcctggtgaacattcatgaagcct 4532277  T
Q  112 ttgaaaaagaggagcatgacaaaccaatatatgataaagaatatattcttgctggatatggtaaatcttgggaggtt 188  Q
    |||||||||||||||||||  |||||||||||||  || ||||||||| ||||| ||||||| |||||| |||||||    
T  4532278 ttgaaaaagaggagcatgatgaaccaatatatgacgaaaaatatattcatgctgaatatggtgaatctttggaggtt 4532354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 1175 - 1287
Alignment:
Q  13 aatatgttggtgctgacatttgtgaagtgtttgaagaagagggaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatgaagtctt 112  Q
    ||||||||||  |||||||||||||||||||| ||||||| ||||| |   ||| |||  |||||| |||||||| ||| ||||| ||||||||||| ||    
T  1175 aatatgttggcactgacatttgtgaagtgtttaaagaagaaggaaacaacgatccaatgaatgatgttgaacatgatcctgatgatattcatgaagtgtt 1274  T
Q  113 tgaaaaagaggag 125  Q
    |||||||||||||    
T  1275 tgaaaaagaggag 1287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 30573 - 30751
Alignment:
Q  9 gaataatatgttggtgctgacatttgtgaagtgtttgaagaagagg--gaaatatatatcgaatatatgatgatgaacatggtcccgatgacattcatga 106  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||  ||||   | ||| |||||   || ||||| ||| || |||||||||||||||    
T  30573 gaataatatgatggtgctgacatttgtgaagtatttgaagaagagggagaaaaggagatccaatat---ataatgaatatgttctcgatgacattcatga 30669  T
Q  107 agtctttgaaaaagaggagcatgacaaaccaatatatgataaagaatatattcttgctggatatggtaaatcttgggaggtt 188  Q
    |||  |||||||||| ||  ||||  ||||||| |||||  |||||||| ||| || || ||||||| |||||| |||||||    
T  30670 agttattgaaaaagatgataatgaagaaccaatgtatgacgaagaatatcttcatgttgaatatggtgaatctttggaggtt 30751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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