View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_high_35 (Length: 242)
Name: NF1317_high_35
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_high_35 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 38392804 - 38392564
Alignment:
| Q |
1 |
gtggattaagtcatacaaaaatgagcataaattcaaattttactttgttcaacgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
38392804 |
gtggattaagtcatacaaaaatgagcataaattcaaattatactttgttcaacgaaattaaaagattgaatggaccaatatacaatgtttgttctgaggc |
38392705 |
T |
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| Q |
101 |
tccaccccatattgtttcagatggtttatggggtggctacgaaaatggaaggagaccaatgaaatcctacttgatcttgtttgagttacagttggttatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
38392704 |
tccaccccatattgtttcagatggtttatggggtggctacgaaaatggaaggagaccaatgaaatccttcttgatcttgtttgagttacaattggttatc |
38392605 |
T |
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| Q |
201 |
atttttgcactcactcaaatatgtagttttcttctcaaacc |
241 |
Q |
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| T |
38392604 |
atttttgcactcactcaaatatgtagttttcttctcaaacc |
38392564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 38383946 - 38383706
Alignment:
| Q |
1 |
gtggattaagtcatacaaaaatgagcataaattcaaattttactttgttcaacgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggc |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
38383946 |
gtggattaagtcatacaaaa-tgagcataaattcaaattatactttgttcaacgaaattaaaagattgaatggaccaatatacaaagtttgttttgaggc |
38383848 |
T |
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| Q |
101 |
tccaccccatattgtttcagatggtttatggggtggctacgaaaatggaaggagaccaatgaaatcctacttgatcttgtttgagttacagttggttatc |
200 |
Q |
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| T |
38383847 |
tccaccccatattgtttcagatggtttatggggtggccacgataatggaaggagaccaatgaaatccttcttaacattgtttgagttacagttgattatc |
38383748 |
T |
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| Q |
201 |
atttttgcactcactcaaatatgtagttttcttctcaaacct |
242 |
Q |
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| T |
38383747 |
atttttgcactcactcaaatatgtagtttccttctcaaacct |
38383706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 38401376 - 38401139
Alignment:
| Q |
5 |
attaagtcatacaaaaatgagcataaattcaaattttactttgttcaacgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggctcca |
104 |
Q |
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| T |
38401376 |
attaagtcatacgaaaatgagcataaattcaaatgatactttgttctaccaaattaaaagattgaatgaaacaatatacaatgtttgtattgaggctcca |
38401277 |
T |
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| Q |
105 |
ccccatattgtttcagatggtttatggggtggctacgaaaatggaaggagaccaatgaaatcctacttgatcttgtttgagttacagttggttatcattt |
204 |
Q |
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|| | ||||||||||||||||||||||| |||| |||||||||||| || ||||||||||| || ||| | ||||||||||||| ||||||||||||| |
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| T |
38401276 |
cctcctattgtttcagatggtttatgggctggccacgaaaatggaaagacaccaatgaaattcttctttcccatgtttgagttacaattggttatcattt |
38401177 |
T |
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| Q |
205 |
ttgcactcactcaaatatgtagttttcttctcaaacct |
242 |
Q |
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| T |
38401176 |
ttgcactcactcaaatatgtagttttcttctcaaacct |
38401139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 37838415 - 37838656
Alignment:
| Q |
1 |
gtggattaagtcatacaaaaatgagcataaattcaaattttactttgttcaacgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||| |
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| T |
37838415 |
gtggattaagtcatacaaaaatgagcataaattcaaatgatactttgttctacgaaattaaaagattgaatgaaactgtatacaaaatttgttttgaggc |
37838514 |
T |
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| Q |
101 |
tccaccccatattgtttcagatggtttatggggtggctacgaaaatggaaggagaccaatgaaatcctacttgatcttgtttgagttacagttggttatc |
200 |
Q |
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| T |
37838515 |
tccaccccatattgtttcagatggtttatggagtggtcacgaaaatgaaaggagaccaatgaaatcttttttgaccttgtttgagttacaattggttatc |
37838614 |
T |
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| Q |
201 |
atttttgcactcactcaaatatgtagttttcttctcaaacct |
242 |
Q |
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| T |
37838615 |
atttttgcactcacacaaatatgcagtttccttctcaaacct |
37838656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 37843978 - 37844216
Alignment:
| Q |
1 |
gtggattaagtcatacaaaaatgagcataaattcaaattttactttgttcaacgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggc |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| || ||||| ||| ||| ||||| |
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| T |
37843978 |
gtggaataagtcatacaaaaatgagcataaattcaaatgatactttgttctacgaaattaaaagattgaatgaagcaggttacaaaatttatttagaggc |
37844077 |
T |
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| Q |
101 |
tccaccccatattgtttcagatggtttatggggtggctacgaaaatggaaggagaccaatgaaatcctacttgatcttgtttgagttacagttggttatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||| |
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| T |
37844078 |
tccaccccatattgtttcagatggtttatggggtggccatgaaaatggaaggagaccaatgaaatctttcttgaccttgtttgagttacaattggttatc |
37844177 |
T |
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| Q |
201 |
atttttgcactcactcaaatatgtagttttcttctcaaa |
239 |
Q |
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|||||||||||||| ||||||||| |||||||||||||| |
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| T |
37844178 |
atttttgcactcacgcaaatatgtcgttttcttctcaaa |
37844216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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