View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1317_high_36 (Length: 233)

Name: NF1317_high_36
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1317_high_36
NF1317_high_36
[»] chr3 (4 HSPs)
chr3 (8-218)||(19270667-19270877)
chr3 (26-219)||(19270720-19270916)
chr3 (22-201)||(19270630-19270809)
chr3 (17-218)||(19270640-19270841)
[»] chr5 (11 HSPs)
chr5 (23-215)||(1586994-1587189)
chr5 (23-215)||(1586853-1587051)
chr5 (32-219)||(1586949-1587139)
chr5 (23-218)||(1586967-1587165)
chr5 (32-219)||(1586835-1587028)
chr5 (32-204)||(1586748-1586929)
chr5 (17-120)||(1587072-1587175)
chr5 (59-215)||(1586748-1586910)
chr5 (23-161)||(1586766-1586910)
chr5 (8-107)||(1587090-1587189)
chr5 (26-109)||(1591032-1591121)


Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 19270877 - 19270667
Alignment:
Q  8 agaagcaaaggaaaaagatgttttccaagaaacaatggaaagagatgttgtccaagaaacaatggaaggagatgttctccaaaaaacaatggaaggagat 107  Q
    |||| ||| ||||||||||||| |||||||||  ||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  19270877 agaaacaatggaaaaagatgttgtccaagaaatgatggaaagagatgttctccaagaaacaatagaagaagatgttctccaaaaaacaatggaaggagat 19270778  T
Q  108 gttgtccaagaaaagttggaaggagatgttctccgagaaacaatagaagaagatgttgtccaagaaaagttggaaggagatgttctccaagaaacaatag 207  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| ||      
T  19270777 gttgtccaagaaaagttggaaggagatgttccccaagaaacaatagaagaagatgttgtccaagaaacaatggaaggagatgttctccaagaaacgatga 19270678  T
Q  208 aagaagatgtt 218  Q
    |||||||||||    
T  19270677 aagaagatgtt 19270667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 219
Target Start/End: Complemental strand, 19270916 - 19270720
Alignment:
Q  26 tgttttccaagaaacaatggaaagagatgttgt---ccaagaaacaatggaaggagatgttctccaaaaaacaatggaaggagatgttgtccaagaaaag 122  Q
    |||| |||||||||||| |||| |||||  |||   ||||||||||||||||  ||||||| ||||| |||  |||||| |||||||| |||||||||      
T  19270916 tgttctccaagaaacaaaggaacgagatcatgttcgccaagaaacaatggaaaaagatgttgtccaagaaatgatggaaagagatgttctccaagaaaca 19270817  T
Q  123 ttggaaggagatgttctccgagaaacaatagaagaagatgttgtccaagaaaagttggaaggagatgttctccaagaaacaatagaagaagatgttg 219  Q
     | |||| ||||||||||| | ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19270816 atagaagaagatgttctccaaaaaacaatggaaggagatgttgtccaagaaaagttggaaggagatgttccccaagaaacaatagaagaagatgttg 19270720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 19270809 - 19270630
Alignment:
Q  22 aagatgttttccaagaaacaatggaaagagatgttgtccaagaaacaatggaaggagatgttctccaaaaaacaatggaaggagatgttgtccaagaaaa 121  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||||   ||||||||||||||| |||| ||||||| |||| |||||||||||||||||     
T  19270809 aagatgttctccaaaaaacaatggaaggagatgttgtccaagaaaagttggaaggagatgttccccaagaaacaatagaagaagatgttgtccaagaaac 19270710  T
Q  122 gttggaaggagatgttctccgagaaacaatagaagaagatgttgtccaagaaaagttggaaggagatgttctccaagaaa 201  Q
      |||||||||||||||||| |||||| ||  |||||||||||  ||||||||   |||||| |||||||  ||||||||    
T  19270709 aatggaaggagatgttctccaagaaacgatgaaagaagatgtttgccaagaaacaatggaagaagatgtttgccaagaaa 19270630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 19270841 - 19270640
Alignment:
Q  17 ggaaaaagatgttttccaagaaacaatggaaagagatgttgtccaagaaacaatggaaggagatgttctccaaaaaacaatggaaggagatgttgtccaa 116  Q
    ||||| ||||||| ||||||||||||| |||  ||||||| ||||| |||||||||||||||||||| ||||| |||   ||||||||||||||  ||||    
T  19270841 ggaaagagatgttctccaagaaacaatagaagaagatgttctccaaaaaacaatggaaggagatgttgtccaagaaaagttggaaggagatgttccccaa 19270742  T
Q  117 gaaaagttggaaggagatgttctccgagaaacaatagaagaagatgttgtccaagaaaagttggaaggagatgttctccaagaaacaatagaagaagatg 216  Q
    ||||   | |||| ||||||| ||| ||||||||| |||| ||||||| ||||||||| | || ||| |||||||  |||||||||||| ||||||||||    
T  19270741 gaaacaatagaagaagatgttgtccaagaaacaatggaaggagatgttctccaagaaacgatgaaagaagatgtttgccaagaaacaatggaagaagatg 19270642  T
Q  217 tt 218  Q
    ||    
T  19270641 tt 19270640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 23 - 215
Target Start/End: Original strand, 1586994 - 1587189
Alignment:
Q  23 agatgttttccaagaaacaatggaaagagatgttgtccaagaaacaatggaaggagat---gttctccaaaaaacaatggaaggagatgttgtccaagaa 119  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||   |||| |||||||||||||||| ||||||||  |||||||    
T  1586994 agatgttgtccaagaaacaatggaaggagatgttgtccaagaaacaatagaaggagatcatgttcgccaaaaaacaatggaaagagatgtttaccaagaa 1587093  T
Q  120 aagttggaaggagatgttctccgagaaacaatagaagaagatgttgtccaagaaaagttggaaggagatgttctccaagaaacaatagaagaagat 215  Q
    |   ||||| |||||||||||| ||||||||| |||| |||||||||||||||||   |||||| |||||||  |||||||| ||| |||||||||    
T  1587094 acaatggaaagagatgttctcccagaaacaatggaaggagatgttgtccaagaaacaatggaagaagatgtttgccaagaaataatggaagaagat 1587189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 23 - 215
Target Start/End: Original strand, 1586853 - 1587051
Alignment:
Q  23 agatgttttccaagaaacaatggaaagagatgttgtccaagaaacaatggaaggag---atgttctccaaaaaacaatggaaggag---atgttgtccaa 116  Q
    ||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||   |||||| |||| |||||| ||||||||   |||||  ||||    
T  1586853 agatgttatccaagaaacaatggaaggagatgttttccaagaaacaatggaaggagatcatgttcaccaagaaacaacggaaggagatcatgttcgccaa 1586952  T
Q  117 gaaaagttggaaggagatgttctccgagaaacaatagaagaagatgttgtccaagaaaagttggaaggagatgttctccaagaaacaatagaagaagat 215  Q
    ||||   |||||||||||||| ||| ||| ||||| |||| |||||||||||||||||   |||||||||||||| |||||||||||||||||| ||||    
T  1586953 gaaacaatggaaggagatgttatccaagacacaatggaaggagatgttgtccaagaaacaatggaaggagatgttgtccaagaaacaatagaaggagat 1587051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 32 - 219
Target Start/End: Original strand, 1586949 - 1587139
Alignment:
Q  32 ccaagaaacaatggaaagagatgttgtccaagaaacaatggaaggagatgttctccaaaaaacaatggaaggagatgttgtccaagaaaagttggaagga 131  Q
    |||||||||||||||| |||||||| ||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||   | ||||||    
T  1586949 ccaagaaacaatggaaggagatgttatccaagacacaatggaaggagatgttgtccaagaaacaatggaaggagatgttgtccaagaaacaatagaagga 1587048  T
Q  132 g---atgttctccgagaaacaatagaagaagatgttgtccaagaaaagttggaaggagatgttctccaagaaacaatagaagaagatgttg 219  Q
    |   |||||| || | ||||||| |||  |||||||  ||||||||   ||||| |||||||||||| ||||||||| |||| ||||||||    
T  1587049 gatcatgttcgccaaaaaacaatggaaagagatgtttaccaagaaacaatggaaagagatgttctcccagaaacaatggaaggagatgttg 1587139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 1586967 - 1587165
Alignment:
Q  23 agatgttttccaagaaacaatggaaagagatgttgtccaagaaacaatggaaggagatgttctccaaaaaacaatggaaggagatgttgt---ccaagaa 119  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||  |||   |||| ||    
T  1586967 agatgttatccaagacacaatggaaggagatgttgtccaagaaacaatggaaggagatgttgtccaagaaacaatagaaggagatcatgttcgccaaaaa 1587066  T
Q  120 aagttggaaggagatgttctccgagaaacaatagaagaagatgttgtccaagaaaagttggaaggagatgttctccaagaaacaatagaagaagatgtt 218  Q
    |   ||||| ||||||||  || ||||||||| |||  ||||||| ||| |||||   |||||||||||||| ||||||||||||| ||||||||||||    
T  1587067 acaatggaaagagatgtttaccaagaaacaatggaaagagatgttctcccagaaacaatggaaggagatgttgtccaagaaacaatggaagaagatgtt 1587165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 219
Target Start/End: Original strand, 1586835 - 1587028
Alignment:
Q  32 ccaagaaacaatggaaagagatgttgtccaagaaacaatggaaggagatgttctccaaaaaacaatggaaggagatgttgt---ccaagaaaagttggaa 128  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||  |||   ||||||||    ||||    
T  1586835 ccaagaaacaatggaaggagatgttatccaagaaacaatggaaggagatgttttccaagaaacaatggaaggagatcatgttcaccaagaaacaacggaa 1586934  T
Q  129 ggagat---gttctccgagaaacaatagaagaagatgttgtccaagaaaagttggaaggagatgttctccaagaaacaatagaagaagatgttg 219  Q
    ||||||   |||| || ||||||||| |||| ||||||| ||||||| |   |||||||||||||| ||||||||||||| |||| ||||||||    
T  1586935 ggagatcatgttcgccaagaaacaatggaaggagatgttatccaagacacaatggaaggagatgttgtccaagaaacaatggaaggagatgttg 1587028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 1586748 - 1586929
Alignment:
Q  32 ccaagaaacaatggaaagagatgttgtccaagaaacaatggaaggag---atgttctccaaaaaacaatggaaggag---atgttgtccaagaaaagttg 125  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||   |||||| |||| |||||| ||||||||   |||||  ||||||||   ||    
T  1586748 ccaagaaacaatggaaggagatgttgtccaagaaacaatggaaggagatcatgttcgccaagaaacaacggaaggagatcatgttcgccaagaaacaatg 1586847  T
Q  126 gaaggagatgttctccgagaaacaatagaagaagatgttgtccaagaaaagttggaaggag---atgttctccaagaaacaa 204  Q
    |||||||||||| ||| ||||||||| |||| ||||||| |||||||||   |||||||||   |||||| |||||||||||    
T  1586848 gaaggagatgttatccaagaaacaatggaaggagatgttttccaagaaacaatggaaggagatcatgttcaccaagaaacaa 1586929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 1587072 - 1587175
Alignment:
Q  17 ggaaaaagatgttttccaagaaacaatggaaagagatgttgtccaagaaacaatggaaggagatgttctccaaaaaacaatggaaggagatgttgtccaa 116  Q
    ||||| |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||||||| |||||||  ||||    
T  1587072 ggaaagagatgtttaccaagaaacaatggaaagagatgttctcccagaaacaatggaaggagatgttgtccaagaaacaatggaagaagatgtttgccaa 1587171  T
Q  117 gaaa 120  Q
    ||||    
T  1587172 gaaa 1587175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 215
Target Start/End: Original strand, 1586748 - 1586910
Alignment:
Q  59 ccaagaaacaatggaaggagatgttctccaaaaaacaatggaaggagatgttgt---ccaagaaaagttggaaggagat---gttctccgagaaacaata 152  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||  |||   ||||||||    ||||||||||   |||| || |||||||||     
T  1586748 ccaagaaacaatggaaggagatgttgtccaagaaacaatggaaggagatcatgttcgccaagaaacaacggaaggagatcatgttcgccaagaaacaatg 1586847  T
Q  153 gaagaagatgttgtccaagaaaagttggaaggagatgttctccaagaaacaatagaagaagat 215  Q
    |||| ||||||| |||||||||   |||||||||||||| ||||||||||||| |||| ||||    
T  1586848 gaaggagatgttatccaagaaacaatggaaggagatgttttccaagaaacaatggaaggagat 1586910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 1586766 - 1586910
Alignment:
Q  23 agatgttttccaagaaacaatggaaagag---atgttgtccaagaaacaatggaaggag---atgttctccaaaaaacaatggaaggagatgttgtccaa 116  Q
    ||||||| ||||||||||||||||| |||   |||||  ||||||||||| ||||||||   |||||| |||| |||||||||||||||||||| |||||    
T  1586766 agatgttgtccaagaaacaatggaaggagatcatgttcgccaagaaacaacggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaa 1586865  T
Q  117 gaaaagttggaaggagatgttctccgagaaacaatagaagaagat 161  Q
    ||||   |||||||||||||| ||| ||||||||| |||| ||||    
T  1586866 gaaacaatggaaggagatgttttccaagaaacaatggaaggagat 1586910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 1587090 - 1587189
Alignment:
Q  8 agaagcaaaggaaaaagatgttttccaagaaacaatggaaagagatgttgtccaagaaacaatggaaggagatgttctccaaaaaacaatggaaggagat 107  Q
    |||| ||| ||||| ||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| |||||||  |||| ||| |||||||| ||||    
T  1587090 agaaacaatggaaagagatgttctcccagaaacaatggaaggagatgttgtccaagaaacaatggaagaagatgtttgccaagaaataatggaagaagat 1587189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 1591121 - 1591032
Alignment:
Q  26 tgttttccaagaaacaatggaaagagatgttgt---ccaagaaacaatggaaggagat---gttctccaaaaaacaatggaaggagatgt 109  Q
    |||| ||||||||||||||||| |||||  |||   |||||||||||||| | |||||   |||| |||| |||||||||||||||||||    
T  1591121 tgttctccaagaaacaatggaacgagatcatgtttgccaagaaacaatggcacgagatcatgttcgccaagaaacaatggaaggagatgt 1591032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University