View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1317_high_5 (Length: 558)

Name: NF1317_high_5
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1317_high_5
NF1317_high_5
[»] chr6 (10 HSPs)
chr6 (51-531)||(896381-896861)
chr6 (51-291)||(1192749-1192982)
chr6 (51-291)||(1181825-1182054)
chr6 (291-446)||(1182299-1182454)
chr6 (51-230)||(1187101-1187276)
chr6 (68-230)||(1197331-1197492)
chr6 (295-354)||(897125-897183)
chr6 (319-448)||(1237376-1237511)
chr6 (389-449)||(1193243-1193303)
chr6 (404-445)||(793867-793908)
[»] chr4 (3 HSPs)
chr4 (51-291)||(10203224-10203456)
chr4 (389-449)||(10203831-10203891)
chr4 (68-133)||(49611893-49611958)
[»] chr8 (8 HSPs)
chr8 (68-150)||(5171567-5171649)
chr8 (71-136)||(1795823-1795888)
chr8 (75-136)||(5185121-5185182)
chr8 (71-136)||(5195115-5195180)
chr8 (68-136)||(5207113-5207181)
chr8 (90-136)||(5177679-5177725)
chr8 (90-136)||(5198925-5198971)
chr8 (90-136)||(6231631-6231677)
[»] chr7 (3 HSPs)
chr7 (75-136)||(5178813-5178874)
chr7 (68-207)||(8306682-8306820)
chr7 (184-256)||(8551885-8551955)


Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 51 - 531
Target Start/End: Complemental strand, 896861 - 896381
Alignment:
Q  51 aaaattgtgttaaaacaaacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgc 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  896861 aaaattgtgttaaaacaaacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgc 896762  T
Q  151 tgcaaaagcaatcgttcnnnnnnncccattagcgtctcatagaaaaactgtagttttagatgataaacaaaatagagttatacaactcacaagctacaca 250  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  896761 tgcaaaagcaatcgttctttttttcccattagcgtctcatagaaaaactgtagttttagatgataaacaaaatagagttatacaactcacaagctacaca 896662  T
Q  251 taacataacattaattataaacattttggagttaaatgcaccatcatctcatccaaaaccccatttctactcaatatgcaataacaatatcctaagtatt 350  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  896661 taacataacattaattataaatattttggagttaaatgcaccatcatctcatccaaaaccccatttgtactcaatatgcaataacaatatcctaagtatt 896562  T
Q  351 caatctaccctatatcaataaatctcatcacaagtataatactcattagagaacacttatcactttatctcattttcttaaccaaatactcattagagac 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  896561 caatctaccctatatcaataaatctcatcacaagtataatactcattagagaacacttatcactttatctcattttcttaaccaaatactcattagagac 896462  T
Q  451 gggtcttcaaatctcagtatttcaaactaaaccaaacatcctaaaaccctgactcatcattataccgtttcatagaataat 531  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  896461 gggtcttcaaatctcagtatttcaaactaaaccaaacatcctaaaaccctgactcatcattataccgtttcatagaataat 896381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 51 - 291
Target Start/End: Complemental strand, 1192982 - 1192749
Alignment:
Q  51 aaaattgtgttaaaacaaacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgc 150  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  1192982 aaaattgtgttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaa--- 1192886  T
Q  151 tgcaaaagcaatcgt--tcnnnnnnncccattagcgtctcatagaaaaactgtagttttagatgataaac-aaaatagagttatacaactcacaagctac 247  Q
    |||||||||||| ||  ||       ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||  || ||||||||||| ||    
T  1192885 tgcaaaagcaattgttctctttttttcccattagcgtctcatacaaaaactgtagttttagatgataaacaaaaatagagt--tagaactcacaagccac 1192788  T
Q  248 acataacataacattaattataaacattttggagttaaatgcac 291  Q
         ||||||||||||||||||| |||||  ||||||||||||    
T  1192787 -----acataacattaattataaatattttttagttaaatgcac 1192749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 51 - 291
Target Start/End: Complemental strand, 1182054 - 1181825
Alignment:
Q  51 aaaattgtgttaaaacaaacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgc 150  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||       
T  1182054 aaaattgtgttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagtcatgccaccaacacttaatttcagcagaaa--- 1181958  T
Q  151 tgcaaaagcaatcgttcnnnnnnncccattagcgtctcatagaaaaactgtagttttagatgataaacaaaatagagttatacaactcacaagctacaca 250  Q
    |||||||||||||| ||       | |||||||||||||||||||| ||| |||||||||||||||||||||||||||   | |||||||||||  ||||    
T  1181957 tgcaaaagcaatcg-tctttttttctcattagcgtctcatagaaaatctgcagttttagatgataaacaaaatagagt--cagaactcacaagc--caca 1181863  T
Q  251 taacataacattaattataaacattttggagttaaatgcac 291  Q
    |   |||||||||||||||||||||||||||| ||||||||    
T  1181862 t---ataacattaattataaacattttggagtaaaatgcac 1181825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 291 - 446
Target Start/End: Complemental strand, 1182454 - 1182299
Alignment:
Q  291 ccatcatctcatccaaaaccccatttctactcaatatgcaataacaatatcctaagtattcaatctaccctatatcaataaatctcatcacaagtataat 390  Q
    |||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  1182454 ccattatctgatccaaaaccccatttgtactcaatatgcaataacaatatcctaagtattcaatataccatatatcaataaatctcatcacaagtataat 1182355  T
Q  391 actcattagagaacacttatcactttatctcattttcttaaccaaatactcattag 446  Q
    ||| |||||||| |||||||||||||||| |||||||||||||| ||| |||||||    
T  1182354 acttattagagagcacttatcactttatcacattttcttaaccacatattcattag 1182299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 1187276 - 1187101
Alignment:
Q  51 aaaattgtgttaaaacaaacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgc 150  Q
    ||||| || ||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||| || | || |||||       
T  1187276 aaaatggtcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtattagaagaaa--- 1187180  T
Q  151 tgcaaaagcaatcgttcnnnnnnncccattagcgtctcatagaaaaactgtagttttagatgataaacaaaatagagtta 230  Q
    ||||||||||||||  |       | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1187179 tgcaaaagcaatcg-cctttttttctcattagcgtctcatagaaaaattgtagttttagatgataaacaaaatagagtta 1187101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 68 - 230
Target Start/End: Complemental strand, 1197492 - 1197331
Alignment:
Q  68 aacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgctgcaaaagcaatcgttc 167  Q
    |||||||||||| |||| | ||| |||  |||||||||||||||||||| |||||||||||||||| || ||| |||||   ||||||||||| ||||||    
T  1197492 aacattctcatcgatcttcatagtgctcgtgactttcacatccttcaagtcatgccaccaacactttgtatcatcagaa---ctgcaaaagcagtcgttc 1197396  T
Q  168 --nnnnnnncccattagcgtctcatagaaaaactgtagttttagatgataaacaaaatagagtta 230  Q
             | ||||| ||||||||||||||||||||||| | || ||| |||||||||||||||    
T  1197395 tttttttttctcattaacgtctcatagaaaaactgtagttatcgacgattaacaaaatagagtta 1197331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 897183 - 897125
Alignment:
Q  295 catctcatccaaaaccccatttctactcaatatgcaataacaatatcctaagtattcaat 354  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  897183 catctcatccaaaaccccatttgtactcaatatgcaataac-atatcctaagtattcaat 897125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 319 - 448
Target Start/End: Original strand, 1237376 - 1237511
Alignment:
Q  319 actcaatatgcaataacaatatcctaagtattcaatctaccctatatcaataaatctcatcacaagtata--------atactcattagagaacacttat 410  Q
    |||||||||||||||||||||||||||||| ||||| |  | || ||||| |||||||| ||||||||||        ||||||||||||||  || |||    
T  1237376 actcaatatgcaataacaatatcctaagtactcaatatgtcatacatcaacaaatctcaacacaagtataataatcatatactcattagagagaacctat 1237475  T
Q  411 cactttatctcattttcttaaccaaatactcattagag 448  Q
    |||  |||| |||||||||||||| |||||||||||||    
T  1237476 cac--tatcacattttcttaaccacatactcattagag 1237511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 449
Target Start/End: Complemental strand, 1193303 - 1193243
Alignment:
Q  389 atactcattagagaacacttatcactttatctcattttcttaaccaaatactcattagaga 449  Q
    |||||||  ||||| ||||||||| || ||| |||||||||||||| ||||||||||||||    
T  1193303 atactcacaagagagcacttatcatttcatcacattttcttaaccacatactcattagaga 1193243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 445
Target Start/End: Original strand, 793867 - 793908
Alignment:
Q  404 cacttatcactttatctcattttcttaaccaaatactcatta 445  Q
    |||||||||||||||| |||||||||||||| ||| ||||||    
T  793867 cacttatcactttatcacattttcttaaccacatattcatta 793908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 51 - 291
Target Start/End: Complemental strand, 10203456 - 10203224
Alignment:
Q  51 aaaattgtgttaaaacaaacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgc 150  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||       
T  10203456 aaaattgtgttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagtagaaa--- 10203360  T
Q  151 tgcaaaagcaatcgt--tcnnnnnnncccattagcgtctcatagaaaaactgtagttttagatgataaacaaaatagagttatacaactcacaagctaca 248  Q
    |||||||||||||||  ||       ||||||||||||||||| ||||||||||||||||||||||||||||||||||||  || |||||||||||  ||    
T  10203359 tgcaaaagcaatcgttctctttttttcccattagcgtctcataaaaaaactgtagttttagatgataaacaaaatagagt--tagaactcacaagc--ca 10203264  T
Q  249 cataacataacattaattataaacattttggagttaaatgcac 291  Q
    || ||   ||||||||||||||||||||||||| |||||||||    
T  10203263 cagaa---aacattaattataaacattttggagataaatgcac 10203224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 449
Target Start/End: Complemental strand, 10203891 - 10203831
Alignment:
Q  389 atactcattagagaacacttatcactttatctcattttcttaaccaaatactcattagaga 449  Q
    ||||||| |||||| |||||||||||| ||| |||||| ||||||| ||||||||||||||    
T  10203891 atactcactagagagcacttatcacttcatcacatttttttaaccacatactcattagaga 10203831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 49611958 - 49611893
Alignment:
Q  68 aacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacactt 133  Q
    ||||||||||||||| | ||| ||  ||  |||||||| |||||||||||||||||||||||||||    
T  49611958 aacattctcatcaattttctttgaagttgagactttcaaatccttcaagccatgccaccaacactt 49611893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 5171649 - 5171567
Alignment:
Q  68 aacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgc 150  Q
    ||||||||| ||||||| | |||||||| | ||||||||||||||||||||||||||||||||||| || |||  ||||||||    
T  5171649 aacattctcgtcaatcttcatagagcttgtaactttcacatccttcaagccatgccaccaacacttggtatcacaagaaatgc 5171567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 1795823 - 1795888
Alignment:
Q  71 attctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagt 136  Q
    |||||||||||||| |   ||||||||||||||||||| |||||||||||||||||||||||||||    
T  1795823 attctcatcaatcttcaccgagcttatgactttcacattcttcaagccatgccaccaacacttagt 1795888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 5185182 - 5185121
Alignment:
Q  75 tcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagt 136  Q
    |||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||||||    
T  5185182 tcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagt 5185121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 5195180 - 5195115
Alignment:
Q  71 attctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagt 136  Q
    |||||||||||||| |   ||||||||||||||||||| |||||||||||||||||||||||||||    
T  5195180 attctcatcaatcttcaccgagcttatgactttcacattcttcaagccatgccaccaacacttagt 5195115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 5207181 - 5207113
Alignment:
Q  68 aacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagt 136  Q
    ||||||||||||||||| | |||||||  ||||||| ||||||||||||||||||||||||||| ||||    
T  5207181 aacattctcatcaatcttcatagagctcgtgacttttacatccttcaagccatgccaccaacacctagt 5207113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 5177725 - 5177679
Alignment:
Q  90 gagcttatgactttcacatccttcaagccatgccaccaacacttagt 136  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  5177725 gagcttatgactttcacattcttcaagccatgccaccaacacttagt 5177679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 5198925 - 5198971
Alignment:
Q  90 gagcttatgactttcacatccttcaagccatgccaccaacacttagt 136  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  5198925 gagcttatgactttcacattcttcaagccatgccaccaacacttagt 5198971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 6231677 - 6231631
Alignment:
Q  90 gagcttatgactttcacatccttcaagccatgccaccaacacttagt 136  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  6231677 gagcttatgactttcacattcttcaagccatgccaccaacacttagt 6231631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 5178874 - 5178813
Alignment:
Q  75 tcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagt 136  Q
    |||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||||||    
T  5178874 tcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagt 5178813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 207
Target Start/End: Complemental strand, 8306820 - 8306682
Alignment:
Q  68 aacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgctgcaaaagcaatcgt-- 165  Q
    ||||||||||||||| | | | |||| | ||||||||| ||||||||||||||||||||||||||| || |||  |||   |||||||||||| ||||      
T  8306820 aacattctcatcaattttcattgagcgtgtgactttcaaatccttcaagccatgccaccaacactttgtatcattaga---gctgcaaaagcagtcgtcg 8306724  T
Q  166 tcnnnnnnncccattagcgtctcatagaaaaactgtagtttt 207  Q
    ||       | |||||| ||||||||||||||||||||||||    
T  8306723 tcttttcttctcattagagtctcatagaaaaactgtagtttt 8306682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 8551885 - 8551955
Alignment:
Q  184 gtctcatagaaaaactgtagttttagatgataaacaaaatagagttatacaactcacaagctacacataacat 256  Q
    |||||||||||||||||||||||| ||  || || ||||||| |||||  |||||| ||||| ||||||||||    
T  8551885 gtctcatagaaaaactgtagttttggacaattaataaaatagcgttat--aactcagaagctccacataacat 8551955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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