View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_high_8 (Length: 419)
Name: NF1317_high_8
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 38706273 - 38706006
Alignment:
| Q |
17 |
tgattatttgtctataaatattatatttcagcgaaaggttgctggaaaagttgattgtagatgaacgatcactgcttgaaacaaagaccaattgtgctga |
116 |
Q |
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| T |
38706273 |
tgattatttgtctataaatattatatttcagcgaaaggttgctggaaaagttgattgtagatgaacgatcactgcttgaaacaaagaccgattgtgatga |
38706174 |
T |
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| Q |
117 |
tgctatgtgcaaggaaatttataagctaatcacaaatcaacaattaaacgatgcccatattctggtatacccattcactttccatccttttctatttaaa |
216 |
Q |
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| T |
38706173 |
tgctatgtgcaaggaaatttataagctaatcacaaatcagcaattaaacgatgcccatattctggtatacccattcactttccatccttttctatttaaa |
38706074 |
T |
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| Q |
217 |
aattttaaacaattggtttaggatatacaaatacaatagaattttgttgttgtctatttttgcaggttgaa |
287 |
Q |
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| T |
38706073 |
atttttaaacaattggtttaggatatacaaatacaatagaattttg---ttgtctatttttgcaggttgaa |
38706006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 285 - 403
Target Start/End: Complemental strand, 38701964 - 38701846
Alignment:
| Q |
285 |
gaatgtcttatggatcagagaaacttgattgttgttctagagtatattgaatacttatgtgatcgagttgctaattacctttatctcattgaatcccaat |
384 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
38701964 |
gaatgtcttatggatcagagaaacttgattgctgttctagagtatattgaatacttttgtgatcgagttgctaatcacctttatctcattggatcccaat |
38701865 |
T |
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| Q |
385 |
ggtatattttaaacataaa |
403 |
Q |
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| T |
38701864 |
ggtatattttaaacataaa |
38701846 |
T |
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