View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1317_low_11 (Length: 499)

Name: NF1317_low_11
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1317_low_11
NF1317_low_11
[»] chr4 (4 HSPs)
chr4 (98-488)||(6423866-6424256)
chr4 (109-189)||(47665820-47665900)
chr4 (121-159)||(33950165-33950203)
chr4 (109-149)||(41584558-41584598)
[»] chr7 (3 HSPs)
chr7 (121-191)||(22386026-22386096)
chr7 (104-150)||(44287860-44287906)
chr7 (115-176)||(27012147-27012208)
[»] chr3 (2 HSPs)
chr3 (115-191)||(38612888-38612963)
chr3 (115-174)||(13725331-13725390)
[»] chr8 (2 HSPs)
chr8 (104-150)||(20154076-20154122)
chr8 (104-150)||(20203348-20203394)
[»] chr5 (2 HSPs)
chr5 (150-191)||(16199223-16199264)
chr5 (147-191)||(12478335-12478379)
[»] chr2 (1 HSPs)
chr2 (99-155)||(42043193-42043249)


Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 98 - 488
Target Start/End: Complemental strand, 6424256 - 6423866
Alignment:
Q  98 aataataacttaaaaagatgaattaatttaatgcaatcacatgtgtcggtgtcagacaccaaacatgccttcgatcagaattgtcggtgctacagtggtg 197  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6424256 aataataacttaaaaagatgaattaattcaatgcaatcacatgtgtcggtgtcagacaccaaacatgccttcgatcagaattgtcggtgctacagcggtg 6424157  T
Q  198 tcatgtgtctactaaaaataacaaaataaaacacaaaccttggtcagaggattcaagaacagaaggattgaggtgagagtggaaccaacagaaagagaat 297  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6424156 tcatgtgtctacaaaaaataacaaaataaaacacaaaccttggtcagaggattcaagaacagaaggattgaggtgagagtggaaccaacagaaagagaat 6424057  T
Q  298 ttagagcaacgaccccccatgaagaagaataagaagcaagtgaaggttgaaggtctaatgaagaatgtttagacagtgttcattgttgtgagcccatttg 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6424056 ttagagcaacgaccccccatgaagaagaataagaagcaagtgaaggttgaaggactaatgaagaatgtttagacagtgttcattgttgtgagcccatttg 6423957  T
Q  398 gtctatgagtactcttgttgtgtttatgttatatttgtttcaacataaatggataaaagttgggaatgcaaaaggttattaaggtgatgat 488  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6423956 gtctatgagtactcttgttgtgtttatgttatgtttgtttcaacataaatggataaaagttgggaatgcaaaaggttactaaggtgatgat 6423866  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 47665900 - 47665820
Alignment:
Q  109 aaaaagatgaattaatttaatgcaatcacatgtgtcggtgtcagacaccaaacatgccttcgatcagaattgtcggtgcta 189  Q
    ||||| || |||||||| |||| ||||||||||||||||||  ||||||  |||||||||| | ||||| |||| ||||||    
T  47665900 aaaaaaattaattaattaaatgtaatcacatgtgtcggtgttggacaccggacatgccttccaccagaagtgtcagtgcta 47665820  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 33950165 - 33950203
Alignment:
Q  121 taatttaatgcaatcacatgtgtcggtgtcagacaccaa 159  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  33950165 taatttaatgtaatcatatgtgtcggtgtcagacaccaa 33950203  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 41584558 - 41584598
Alignment:
Q  109 aaaaagatgaattaatttaatgcaatcacatgtgtcggtgt 149  Q
    ||||| |||| ||||||||||| ||||||||||||||||||    
T  41584558 aaaaatatgatttaatttaatgtaatcacatgtgtcggtgt 41584598  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 22386026 - 22386096
Alignment:
Q  121 taatttaatgcaatcacatgtgtcggtgtcagacaccaaacatgccttcgatcagaattgtcggtgctaca 191  Q
    ||||||||||  |||| | ||||||||||||||||||| |||| ||||| ||||||| ||||||| |||||    
T  22386026 taatttaatgttatcatacgtgtcggtgtcagacaccagacataccttcaatcagaaatgtcggtactaca 22386096  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 44287860 - 44287906
Alignment:
Q  104 aacttaaaaagatgaattaatttaatgcaatcacatgtgtcggtgtc 150  Q
    ||||| |||| ||||||||||| |||||||||||||||||| |||||    
T  44287860 aacttgaaaaaatgaattaattaaatgcaatcacatgtgtcagtgtc 44287906  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 27012147 - 27012208
Alignment:
Q  115 atgaattaatttaatgcaatcacatgtgtcggtgtcagacaccaaacatgccttcgatcaga 176  Q
    ||||||||||| |||| | |||||||||||  |||| ||||||| | |||||||||||||||    
T  27012147 atgaattaattaaatgtattcacatgtgtctatgtcggacaccagatatgccttcgatcaga 27012208  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 38612963 - 38612888
Alignment:
Q  115 atgaattaatttaatgcaatcacatgtgtcggtgtcagacaccaaacatgccttcgatcagaattgtcggtgctaca 191  Q
    ||||||||| | |||| | || ||||||||| |||| ||||||||||||||||| |||||||| ||||| |||||||    
T  38612963 atgaattaactgaatgtactcgcatgtgtcg-tgtcggacaccaaacatgccttagatcagaaatgtcgatgctaca 38612888  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 13725331 - 13725390
Alignment:
Q  115 atgaattaatttaatgcaatcacatgtgtcggtgtcagacaccaaacatgccttcgatca 174  Q
    ||||||||||| |||| ||||||||||||| ||| ||||||||  |||||||||| ||||    
T  13725331 atgaattaattgaatgaaatcacatgtgtctgtgccagacaccggacatgccttcaatca 13725390  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 20154122 - 20154076
Alignment:
Q  104 aacttaaaaagatgaattaatttaatgcaatcacatgtgtcggtgtc 150  Q
    ||||| |||| ||||||||||| |||||||||||||||||| |||||    
T  20154122 aacttgaaaaaatgaattaattaaatgcaatcacatgtgtcagtgtc 20154076  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 20203348 - 20203394
Alignment:
Q  104 aacttaaaaagatgaattaatttaatgcaatcacatgtgtcggtgtc 150  Q
    ||||| |||| ||||||||||| |||||||||||||||||| |||||    
T  20203348 aacttgaaaaaatgaattaattaaatgcaatcacatgtgtcagtgtc 20203394  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 16199264 - 16199223
Alignment:
Q  150 cagacaccaaacatgccttcgatcagaattgtcggtgctaca 191  Q
    ||||||||||||| ||||| |||||||| |||||||||||||    
T  16199264 cagacaccaaacaagcctttgatcagaaatgtcggtgctaca 16199223  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 12478335 - 12478379
Alignment:
Q  147 tgtcagacaccaaacatgccttcgatcagaattgtcggtgctaca 191  Q
    |||||||||||| ||| |||||| ||||||| |||||||||||||    
T  12478335 tgtcagacaccagacacgccttccatcagaaatgtcggtgctaca 12478379  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 42043249 - 42043193
Alignment:
Q  99 ataataacttaaaaagatgaattaatttaatgcaatcacatgtgtcggtgtcagaca 155  Q
    ||||||| |||| || ||||||||||| |||| ||| ||||| ||||||||||||||    
T  42043249 ataataatttaataaaatgaattaattgaatgtaataacatgcgtcggtgtcagaca 42043193  T

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