View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_low_12 (Length: 433)
Name: NF1317_low_12
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 196 - 428
Target Start/End: Original strand, 19413612 - 19413839
Alignment:
| Q |
196 |
atcattgaacagataaacaacataccgtaattgaaacaaattaaagacctacagctttatgtaattttactcagtgaagggtgaggttttagttctattt |
295 |
Q |
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| T |
19413612 |
atcaatgaacagataaacaacatactgtaattgaaaccaaataaagacttaaagctttatgtaattttactcagtgaagggtgaggttttagttctattt |
19413711 |
T |
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| Q |
296 |
tatcctctttctttcacagttcttaatcgaaactcatgtaatcatatttttcctcttatccttcaattannnnnnnaccatgttggtttaagttggtgat |
395 |
Q |
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| T |
19413712 |
tatcctcttccattcatagttcttaatcgaaactcatgtaatcaaatttttc-----gtccttcaattattttttggccatgttggttgaagttggtgat |
19413806 |
T |
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| Q |
396 |
tgtttaagagaacgtttcatccttctccttgat |
428 |
Q |
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| T |
19413807 |
tgtttaagagcacgtttcttccttctccttgat |
19413839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 30 - 155
Target Start/End: Original strand, 19413224 - 19413349
Alignment:
| Q |
30 |
aagagaaagtctgccaaaccgactagtggatcaagactgaactgaacttggaaagtcaagacagatttacaggtcgaattaatgcagattttatcatttg |
129 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19413224 |
aagagaaagtctgccaaaccgactagtggatcaagacagaactgaacttggaaattcaagacagatttacagggcgaattaatgcagattttatcatttg |
19413323 |
T |
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| Q |
130 |
gatcatgtggtttaacaaatactcgc |
155 |
Q |
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| T |
19413324 |
tatcatgtgggttaacaaatactcgc |
19413349 |
T |
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