View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_low_13 (Length: 422)
Name: NF1317_low_13
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 65 - 294
Target Start/End: Original strand, 5461013 - 5461242
Alignment:
| Q |
65 |
aagatgatcattccaacaccgactatgtgctgcttttacagtactgttgcatgtaccacatatcccaatctcagtttttccattacaaaaacgttgttgc |
164 |
Q |
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| T |
5461013 |
aagatgatcattccaacaccgactatgtgctgcttttatagtactgttgcatgtaccatatatcccaatctcagtttttccattacaaaaacgttgttgc |
5461112 |
T |
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| Q |
165 |
aaagctccgtcgatcatccaaatttcttcctannnnnnngatctctttgtttcgggacattcctcaagaaaccataacccctctcataaagttattgtgt |
264 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5461113 |
aaagctccgtcgataatccaaatttcttcctatttttttgatctctttgtttcgggacattcctcaagaaaccataatccctctcataaagttattgtgt |
5461212 |
T |
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| Q |
265 |
ttttcaaatataagttagaacgaaataaga |
294 |
Q |
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| T |
5461213 |
ttttcaaatataagttagaacgaaataaga |
5461242 |
T |
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