View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_low_15 (Length: 412)
Name: NF1317_low_15
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 90 - 398
Target Start/End: Original strand, 34280007 - 34280316
Alignment:
| Q |
90 |
ttgagttttgtttgttccattgtgttaggggtatgggcgccttgttgctttgggtgtgaagtaccatcaattgttggtgcttagtgtattttattgtacg |
189 |
Q |
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| T |
34280007 |
ttgagttttgtttgttccatggtgttaggggtgtgggcgccttgttgctttgggtgtgaagtaccatcaattgttggtgcttggtgtattttattgtacg |
34280106 |
T |
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| Q |
190 |
ttttgtgtctttactggcacattttttgcttgtaattgtgctttgggtgtattaataaatttcatttgctacttnnnnnnnnctatgggagaggaattta |
289 |
Q |
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| T |
34280107 |
ttttgtgtctttacttgcacattttgtgcttgtaattgtgctttgggtgtattaataaatttcatttgctacttaaaaaaaactatgggagaggaattta |
34280206 |
T |
|
| Q |
290 |
gaaatctcatgctaataattcatggaaatcgctagttatgaaagtgaagacgttgtcattcaaacacct-taagtaattaatggactgacaaaatagatt |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||| |||||||||||||||||||||| |
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| T |
34280207 |
gaaatctcatgctaataattcatggaaatcgctagttatgaaagtgaagacattgtcattcaaacaactctaagtaactaatggactgacaaaatagatt |
34280306 |
T |
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| Q |
389 |
acacaactgt |
398 |
Q |
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| T |
34280307 |
acacaactgt |
34280316 |
T |
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