View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_low_16 (Length: 412)
Name: NF1317_low_16
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 40 - 411
Target Start/End: Original strand, 19704193 - 19704564
Alignment:
| Q |
40 |
gttgccaacactgctgaagatgaaagtttgattactaaccctaacgctgcgcatatgcaaggaattcccactccagaaatatatgaatcaccaagagtta |
139 |
Q |
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| T |
19704193 |
gttgccaacactgctgaagatgaaagtttgattactaaccctaacgctgcgcatatgcaaggaattcccactccagaaatatatgaatcaccaagagtta |
19704292 |
T |
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| Q |
140 |
cttctgtgccactcagaacgaaagaaaatacacaaatacaacttttggacatcaattttcctccaaggatcaccaaacctgcagttttttcacagccatc |
239 |
Q |
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| T |
19704293 |
cttctgtgccactcagaacgaaagaaaatacacaaatacaacttttggacatcaattttcctccaaggatcaccaaacctgcagttttttcacagccatc |
19704392 |
T |
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| Q |
240 |
gaaggaaccacatccaaaatccgctgaacctctgcatgaaagccagccaaaaggagaacaaaaccaggacagaatgccagcaaaagctcctattgcagaa |
339 |
Q |
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| T |
19704393 |
gaaggaaccacatccaaaatccgctgaacctctgcatgaaagccagccaaaaggagaacaaaaccaggacagaatgccagcaaaagctcctattgcagaa |
19704492 |
T |
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| Q |
340 |
gtttcatcaacaggttctgttaacggagctctaagtgaggttcaatctagttcgtctccagtggaagcatcc |
411 |
Q |
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| T |
19704493 |
gtttcatcaacaggttctgttaacggagctctaagtgaggttcaatctagttcgtctccagtggaagcatcc |
19704564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 294 - 411
Target Start/End: Original strand, 4301171 - 4301288
Alignment:
| Q |
294 |
agaacaaaaccaggacagaatgccagcaaaagctcctattgcagaagtttcatcaacaggttctgttaacggagctctaagtgaggttcaatctagttcg |
393 |
Q |
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| T |
4301171 |
agaacgaaaccaggacagcatgccagcaaaaactcctattgcagaagtttcatcaacaagttctgttaatggagctctaagcgaggttcaatctagttcg |
4301270 |
T |
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| Q |
394 |
tctccagtggaagcatcc |
411 |
Q |
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| T |
4301271 |
tctcccgtggaagcatcc |
4301288 |
T |
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