View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_low_20 (Length: 394)
Name: NF1317_low_20
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 33440455 - 33440225
Alignment:
| Q |
14 |
agacacctttgatcatataaaattcaagactatatataagatgaaatattagttaaggaagatagttttccaattaatacctgttacaatctatggaagc |
113 |
Q |
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| T |
33440455 |
agacacctttgatcatataaaattcaagactatatataagatgaaatattggttaaggaagatagttttccaattaatacctgttacaatctatggaagc |
33440356 |
T |
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| Q |
114 |
aggctggaatactttctgtttttgttcagccatatagaaagcatcatgagagttgccaccacaaacaataacctctgccttaatgggttcattagtagct |
213 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33440355 |
aggctggaatactttctgtttttgttcagccaaatagaaagcatcatgtgagttgccaccacaaacaatgacctctgccttaatgggttcattagtagct |
33440256 |
T |
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| Q |
214 |
agatttatagggaggagggcagacatgccgg |
244 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
33440255 |
agatttatagggaggagggcagacatgccgg |
33440225 |
T |
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