View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_low_22 (Length: 387)
Name: NF1317_low_22
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_low_22 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 97 - 387
Target Start/End: Complemental strand, 12622051 - 12621761
Alignment:
| Q |
97 |
agctccttcatccatattgcgatatcttctttcgaaagctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagct |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12622051 |
agctccttcatccatattgcgatatcttctttcgaaagctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagct |
12621952 |
T |
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| Q |
197 |
gacccttgctattctcagcttgaactttcaactttataatctcttgttccgaaagctgaagtttaaaattagaaactcttagctcttcctcattttcttt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12621951 |
gacccttgctattctcagcttgaactttcaactttataatctcttgttccgaaagctgaagtttaaaattagaaactcttagctcttcctcattttcttt |
12621852 |
T |
|
| Q |
297 |
gaactttttgagcaattgatcataacttttattgtccatctcccatgataaattatcatctgtattttccaccccaacaaactggttttct |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12621851 |
gaactttttgagcaattgatcataacttttattgtccatctcccatgataaattatcatctgtattttccaccccaacaaactggttttct |
12621761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 134 - 387
Target Start/End: Complemental strand, 12627892 - 12627645
Alignment:
| Q |
134 |
gctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagctgacccttgctattctcagcttgaactttcaactttat |
233 |
Q |
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|||||||| ||| | ||| |||||||| |||||||||| |||||| ||||| |||||||||| ||||| ||||||||| || ||| ||||||||||| |
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| T |
12627892 |
gctcttttagtttacgcacctcttcctctttcagcttcagttcttcgcgcacattatcaagctcaccctcactattctcaatttcaaccttcaactttat |
12627793 |
T |
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| Q |
234 |
aatctcttgttccgaaagctgaagtttaaaattagaaactcttagctcttcctcattttctttgaactttttgagcaattgatcataacttttattgtcc |
333 |
Q |
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| T |
12627792 |
agtttcttgttttgaaagttgaagtttaaaattggaaattcttagctcttcctccttttcattaaactttttaagcaactcatcataagttccgttgtcc |
12627693 |
T |
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| Q |
334 |
atctcccatgataaattatcatctgtattttccaccccaacaaactggttttct |
387 |
Q |
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|||||||| || ||||||||||||||||| |||||||||||||||||| |
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| T |
12627692 |
atctcccacga------gtcatctgtattttccactccaacaaactggttttct |
12627645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 124 - 385
Target Start/End: Complemental strand, 42843251 - 42842993
Alignment:
| Q |
124 |
tctttcgaaagctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagctgacccttgctattctcagcttgaactt |
223 |
Q |
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|||| ||||||| ||||||||| ||||| ||| | || |||||||||||||| |||| | | ||||| | |||||| ||| ||||| ||||||| | |
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| T |
42843251 |
tcttccgaaagcactttttgtttatgcaactccttctctttcagcttcaattcctcacataaatcatcaaacagaccctcactactctcaacttgaacct |
42843152 |
T |
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| Q |
224 |
tcaactttataatctcttgttccgaaagctgaagtttaaaattagaaactcttagctcttcctcattttctttgaactttttgagcaattgatcataact |
323 |
Q |
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| T |
42843151 |
tcaactttatattctcttcttccgaaagctgaagctttaaattggtaacccttagctcttcctccttttccatgaactttttgagcaaattatcataact |
42843052 |
T |
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| Q |
324 |
tttattgtccatctcccatgataaattatcatctgtattttccaccccaacaaactggtttt |
385 |
Q |
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| T |
42843051 |
tctattgtctatctcccacgataa---atcatctgtgttttccaccccaacaaactgatttt |
42842993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 130 - 356
Target Start/End: Complemental strand, 42819324 - 42819098
Alignment:
| Q |
130 |
gaaagctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagctgacccttgctattctcagcttgaactttcaact |
229 |
Q |
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|||| ||| ||||||| ||||| ||| |||| ||||||||||||||||||| ||| ||||||| |||||||||||| |||||| ||||||| ||||| | |
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| T |
42819324 |
gaaacctccttttgtttatgcatctcgtcctctttcagcttcaattcttcacacacattatcaaactgacccttgctgttctcaacttgaaccttcaagt |
42819225 |
T |
|
| Q |
230 |
ttataatctcttgttccgaaagctgaagtttaaaattagaaactcttagctcttcctcattttctttgaactttttgagcaattgatcataacttttatt |
329 |
Q |
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| |||| ||||| ||||||||| ||||| || ||||| | |||||||||||||||||| || || || ||||||||||||| | |||||||||| |||| |
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| T |
42819224 |
tgataacctctttttccgaaagttgaagctttaaattggtaactcttagctcttcctcgttctcaatgcactttttgagcaacttatcataacttctatt |
42819125 |
T |
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| Q |
330 |
gtccatctcccatgataaattatcatc |
356 |
Q |
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||| |||||||| ||||| ||||||| |
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| T |
42819124 |
gtcaatctcccacaataaactatcatc |
42819098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 287
Target Start/End: Complemental strand, 42834519 - 42834363
Alignment:
| Q |
131 |
aaagctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagctgacccttgctattctcagcttgaactttcaactt |
230 |
Q |
| |
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||||||||||||||| || ||||| ||| || || ||||||||||| | ||| ||||| || ||||||| | |||| || |||| || |||||||| |
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| T |
42834519 |
aaagctctttttgtttcctcaactctttcttttttagattcaattcttcgctcacattatctagttgaccctcaccattcccaacttggaccttcaactt |
42834420 |
T |
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| Q |
231 |
tataatctcttgttccgaaagctgaagtttaaaattagaaactcttagctcttcctc |
287 |
Q |
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|||| |||||| ||| ||||| |||| || |||| | ||| |||||||||||||| |
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| T |
42834419 |
tatattctcttcttctgaaagtcgaagctttgaattggtaacccttagctcttcctc |
42834363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 223 - 329
Target Start/End: Original strand, 30924743 - 30924849
Alignment:
| Q |
223 |
ttcaactttataatctcttgttccgaaagctgaagtttaaaattagaaactcttagctcttcctcattttctttgaactttttgagcaattgatcataac |
322 |
Q |
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|||||||| |||||||||| ||| ||||||| |||||| ||||| ||||||| |||||||||||| |||| ||||||| || ||||||| |||||||| |
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| T |
30924743 |
ttcaacttgataatctcttcttctgaaagcttaagtttcaaattggaaactcgtagctcttcctcgtttttaatgaacttcttcagcaattcatcataac |
30924842 |
T |
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| Q |
323 |
ttttatt |
329 |
Q |
| |
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||||||| |
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| T |
30924843 |
ttttatt |
30924849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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