View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1317_low_26 (Length: 365)

Name: NF1317_low_26
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1317_low_26
NF1317_low_26
[»] scaffold0003 (2 HSPs)
scaffold0003 (97-355)||(41913-42171)
scaffold0003 (97-355)||(35243-35501)
[»] chr6 (3 HSPs)
chr6 (97-355)||(27445187-27445445)
chr6 (97-355)||(20909550-20909808)
chr6 (97-355)||(20923998-20924256)
[»] chr8 (2 HSPs)
chr8 (97-355)||(42312664-42312922)
chr8 (230-355)||(43227254-43227378)
[»] chr7 (2 HSPs)
chr7 (97-355)||(11504544-11504810)
chr7 (241-355)||(18939752-18939865)
[»] chr1 (1 HSPs)
chr1 (97-355)||(41326448-41326702)


Alignment Details
Target: scaffold0003 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 97 - 355
Target Start/End: Original strand, 41913 - 42171
Alignment:
Q  97 atgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcag 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41913 atgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcag 42012  T
Q  197 atttaaccataaagaatgaaggaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgac 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42013 atttaaccataaagaatgaaggaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgac 42112  T
Q  297 aataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatg 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42113 aataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatg 42171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 97 - 355
Target Start/End: Original strand, 35243 - 35501
Alignment:
Q  97 atgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcag 196  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35243 atgagttagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacagaaattgcag 35342  T
Q  197 atttaaccataaagaatgaaggaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgac 296  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35343 atttaaccataaagaatgaaggaaataatcgatcatagaatataataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgac 35442  T
Q  297 aataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatg 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35443 aataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatg 35501  T

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Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 97 - 355
Target Start/End: Complemental strand, 27445445 - 27445187
Alignment:
Q  97 atgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcag 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27445445 atgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcag 27445346  T
Q  197 atttaaccataaagaatgaaggaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgac 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27445345 atttaaccataaagaatgaaggaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgac 27445246  T
Q  297 aataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatg 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27445245 aataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatg 27445187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 97 - 355
Target Start/End: Original strand, 20909550 - 20909808
Alignment:
Q  97 atgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcag 196  Q
    ||||| || ||||||||||||||||||||||||||||   ||||||||||||||||||||||||| ||||| |||||||||| ||||| ||| | |||||    
T  20909550 atgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaatatgatgttttggaatcatcaaataaaga-tgcag 20909648  T
Q  197 atttaaccataaaga-atgaaggaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcga 295  Q
    |||| || ||| | | || | | |||||||  |||||||||| | |||||||||||||||||||||| |||||||| |||| ||||| |||| ||||| |    
T  20909649 attttactatacatatataaggaaaataattaatcatagaatatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttcta 20909748  T
Q  296 caataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatg 355  Q
      | | | | ||||||||||| | ||||| |||||||||||||| |||||||||| ||||    
T  20909749 ttacagagagatcttcctgtcgaacaacacttgattctaaaactcttgcttcatcatatg 20909808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 97 - 355
Target Start/End: Original strand, 20923998 - 20924256
Alignment:
Q  97 atgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcag 196  Q
    ||||| || ||||||||||||||||||||||||||||   ||||||||||||||||||||||||| ||||| |||||||||| ||||| ||| | |||||    
T  20923998 atgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaatatgatgttttggaatcatcaaataaaga-tgcag 20924096  T
Q  197 atttaaccataaaga-atgaaggaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcga 295  Q
    |||| || ||| | | || | | |||||||  |||||||||| | |||||||||||||||||||||| |||||||| |||| ||||| |||| ||||| |    
T  20924097 attttactatacatatataaggaaaataattaatcatagaatatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttcta 20924196  T
Q  296 caataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatg 355  Q
      | | | | ||||||||||| | ||||| |||||||||||||| |||||||||| ||||    
T  20924197 ttacagagagatcttcctgtcgaacaacacttgattctaaaactcttgcttcatcatatg 20924256  T

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Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 97 - 355
Target Start/End: Original strand, 42312664 - 42312922
Alignment:
Q  97 atgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcag 196  Q
    ||||| || ||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||| |||||||||| ||||| ||| | |||||    
T  42312664 atgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaacgtgatgttttggaatcatcaaataaaga-tgcag 42312762  T
Q  197 atttaaccataaaga-atgaaggaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcga 295  Q
    ||||||| ||| | | || | | |||||||  |||||||||| | |||||||||||||| |||||||  ||||||| |||| ||||| |||| |||||||    
T  42312763 atttaactatacatatataaggaaaataattaatcatagaatatgataaagtaatataaaataacaatgaacacagtggcatcaagtaagacgtcttcga 42312862  T
Q  296 caataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatg 355  Q
      | | | | ||||||||||| | ||||| |||||||||| ||| |||||||||| ||||    
T  42312863 ttacagagagatcttcctgtcgaacaacacttgattctaatactcttgcttcatcgtatg 42312922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 355
Target Start/End: Complemental strand, 43227378 - 43227254
Alignment:
Q  230 catagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacatttga 329  Q
    |||| ||||| ||||||||||||||||||| ||||||||| |   |  ||||| | |  ||||| || ||| | |||||||||||||||  |||| ||||    
T  43227378 cataaaatctgataaagtaatataacataataacaaacac-gctacgtcaagtaacatgtcttcaactatagagatatcttcctgtcaaagaacacttga 43227280  T
Q  330 ttctaaaactattgcttcatcctatg 355  Q
    |||||||||| |||||||||||||||    
T  43227279 ttctaaaactcttgcttcatcctatg 43227254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 97 - 355
Target Start/End: Complemental strand, 11504810 - 11504544
Alignment:
Q  97 atgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcag 196  Q
    ||||| ||||||||||||||||| ||||||||||| |   ||||||||||||||||||||| |||||| || |||| ||||| ||||| | | |||||||    
T  11504810 atgagttagttgataattatctaccaaattcaattggtgaaattcttattgtgcataggagtaaacataatgttttagaatcatcaaaaacagattgcag 11504711  T
Q  197 atttaaccataaagaat-gaaggaaataatcgatcatagaatctaataaagtaatataacat--------aacaacaaacacaggggcagcaagttagac 287  Q
    ||||||| ||||| |||  |||||||||||  |||| ||||| | |||||||||| ||||||        ||||| |||| ||| |||| ||||| ||||    
T  11504710 atttaactataaaaaatataaggaaataattaatca-agaatatgataaagtaatctaacataacaataaaacaataaacgcagtggcatcaagtgagac 11504612  T
Q  288 atcttcgacaataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatg 355  Q
     |||||||  | ||| |||||||| |||||| ||||| |||||||||||||| |||||||||| ||||    
T  11504611 gtcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatg 11504544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 355
Target Start/End: Original strand, 18939752 - 18939865
Alignment:
Q  241 ataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacatttgattctaaaacta 340  Q
    |||||||| | ||||||||||| ||||||||  ||| ||| | |||| ||||||| | |||| ||||||||||  ||| ||||| ||||||||||||||     
T  18939752 ataaagtattctaacataacaataaacacagttgcatcaattaagacgtcttcgata-taaagatatcttccttccaaacaacacttgattctaaaactc 18939850  T
Q  341 ttgcttcatcctatg 355  Q
    ||| |||||| ||||    
T  18939851 ttgattcatcatatg 18939865  T

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Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 97 - 355
Target Start/End: Original strand, 41326448 - 41326702
Alignment:
Q  97 atgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcag 196  Q
    ||||| || ||||||||||||||||||||||||||||   ||||||||||||||||||||||||   |||| |||||||||| ||||| ||| || ||||    
T  41326448 atgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaa---tgatgttttggaatcatcaaataaagat-gcag 41326543  T
Q  197 atttaaccataaagaatgaaggaaa-taatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcga 295  Q
    ||||  | ||| | |   ||||||| ||||  |||||||||| | |||||||||||||||||||||| |||||||| |||| ||||| |||| |||||||    
T  41326544 atttt-ctatacatatataaggaaaataattaatcatagaatatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttcga 41326642  T
Q  296 caataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatg 355  Q
      | | | | ||||||||||| | ||| | |||||||||||||| |||||||||| ||||    
T  41326643 ttacagagagatcttcctgtcgaacaaaacttgattctaaaactcttgcttcatcatatg 41326702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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