View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1317_low_27 (Length: 361)

Name: NF1317_low_27
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1317_low_27
NF1317_low_27
[»] chr4 (6 HSPs)
chr4 (100-275)||(2541333-2541508)
chr4 (166-246)||(7395279-7395359)
chr4 (169-244)||(22093481-22093556)
chr4 (100-172)||(26063316-26063387)
chr4 (100-147)||(647826-647873)
chr4 (105-175)||(26060135-26060205)
[»] chr2 (5 HSPs)
chr2 (165-274)||(13517878-13517987)
chr2 (165-262)||(11059382-11059479)
chr2 (100-159)||(32576308-32576367)
chr2 (100-147)||(40017553-40017600)
chr2 (100-147)||(31527965-31528012)
[»] chr3 (7 HSPs)
chr3 (165-274)||(2783696-2783804)
chr3 (161-244)||(18645107-18645187)
chr3 (165-244)||(35412227-35412303)
chr3 (100-159)||(13979054-13979113)
chr3 (100-147)||(11139191-11139238)
chr3 (100-147)||(22626935-22626982)
chr3 (119-159)||(31878312-31878352)
[»] chr7 (11 HSPs)
chr7 (165-246)||(26809172-26809253)
chr7 (105-180)||(36843565-36843641)
chr7 (108-159)||(23313832-23313883)
chr7 (105-159)||(9765361-9765415)
chr7 (100-157)||(3862518-3862575)
chr7 (100-147)||(6966723-6966770)
chr7 (100-147)||(17863717-17863764)
chr7 (100-147)||(17866976-17867023)
chr7 (100-147)||(23760231-23760278)
chr7 (125-159)||(23107554-23107588)
chr7 (105-159)||(35773159-35773213)
[»] chr5 (4 HSPs)
chr5 (165-274)||(28562795-28562903)
chr5 (165-274)||(28566363-28566471)
chr5 (161-244)||(42062548-42062628)
chr5 (100-147)||(34405424-34405471)
[»] chr6 (13 HSPs)
chr6 (165-237)||(20189867-20189939)
chr6 (165-237)||(22146052-22146124)
chr6 (165-246)||(16730976-16731057)
chr6 (100-159)||(15537847-15537906)
chr6 (105-159)||(19665292-19665346)
chr6 (100-159)||(1838037-1838096)
chr6 (100-159)||(15534652-15534711)
chr6 (100-167)||(20527785-20527852)
chr6 (100-147)||(13017812-13017859)
chr6 (100-147)||(14790194-14790241)
chr6 (100-147)||(14795222-14795269)
chr6 (100-147)||(32704876-32704923)
chr6 (100-158)||(16883241-16883299)
[»] scaffold0567 (1 HSPs)
scaffold0567 (100-159)||(6432-6491)
[»] chr8 (2 HSPs)
chr8 (100-159)||(12575922-12575981)
chr8 (100-159)||(13096594-13096653)
[»] chr1 (5 HSPs)
chr1 (100-159)||(1936191-1936250)
chr1 (100-159)||(16190799-16190858)
chr1 (100-147)||(10759697-10759744)
chr1 (105-159)||(34065908-34065962)
chr1 (100-144)||(23990710-23990754)
[»] scaffold0665 (1 HSPs)
scaffold0665 (100-147)||(267-314)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 100 - 275
Target Start/End: Complemental strand, 2541508 - 2541333
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaaccaaaagagaaattagctagacatagaaatataaataaatagc 199  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||    
T  2541508 aggaattcaacaaattagagttcccataagattacattagattcatctaagtctcaaccaatagagaaattagctaaacatagaaatacaaataaatagc 2541409  T
Q  200 atggaaaataaaattaaccatgaaaccatgttgttcctcatttctctgctgcttcgtgagttttctgttgccttca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  2541408 atggaaaataaaattaaccatgaaaccatgttgttcctcatttctccactgcttcgtgagttttctgttgccttca 2541333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 7395279 - 7395359
Alignment:
Q  166 aaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctct 246  Q
    |||||| ||||||||||| ||| |||||||||||||| ||||||||||||||||  ||| |||||||||||||| ||||||    
T  7395279 aaattaactagacatagagatacaaataaatagcatgaaaaataaaattaaccacaaaaacatgttgttcctcaattctct 7395359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 22093481 - 22093556
Alignment:
Q  169 ttagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttct 244  Q
    ||||||| ||||||| ||| ||||||||| | |||||||||||||||||||||  | ||| |||||||||| ||||    
T  22093481 ttagctacacatagagatacaaataaatatcttggaaaataaaattaaccatgtcatcatcttgttcctcaattct 22093556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 26063316 - 26063387
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaaccaaaagagaaattag 172  Q
    |||| |||||||||| || ||||||||| |||||||| | |||||||| ||||||||||| || |||||||||    
T  26063316 aggagttcaacaaatcagggttcccatatgattacattagattcatctcagtctcaaccacaa-agaaattag 26063387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 647826 - 647873
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatct 147  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  647826 aggagttcaacaaattagggttcccataggattacatcagattcatct 647873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 26060205 - 26060135
Alignment:
Q  105 ttcaacaaattagagttcccataagattacatcatattcatctaagtctcaaccaaaagagaaattagcta 175  Q
    ||||||||| |||  ||| ||||  |||| ||||||||||||||||||||||||||  || ||||||||||    
T  26060205 ttcaacaaactaggattctcatacaattatatcatattcatctaagtctcaaccaattgaaaaattagcta 26060135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 165 - 274
Target Start/End: Complemental strand, 13517987 - 13517878
Alignment:
Q  165 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctctgctgcttcgtgagttttc 264  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||  |||  |||||| ||||||||||||||| |    
T  13517987 gaaattagctagacatagagatacaaataaatagcatgggaaataaaattaaccatgaaaccatgttgtggctcggttctctactgcttcgtgagtttcc 13517888  T
Q  265 tgttgccttc 274  Q
    ||||||||||    
T  13517887 tgttgccttc 13517878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 165 - 262
Target Start/End: Complemental strand, 11059479 - 11059382
Alignment:
Q  165 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctctgctgcttcgtgagttt 262  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| |||  |||||| |||||||||||||||    
T  11059479 gaaattagctagacatagagatacaaataaatagcatgggaaataaaattaaccatgaaaccatgttgttgctcggttctctactgcttcgtgagttt 11059382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 32576308 - 32576367
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 159  Q
    |||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||    
T  32576308 aggagttcaacaaattagggttcctataggattacatcatattcatctaagtctcaacca 32576367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 40017600 - 40017553
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatct 147  Q
    |||| ||||||||||||| ||||||||| |||||||||||||||||||    
T  40017600 aggagttcaacaaattagggttcccataggattacatcatattcatct 40017553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 31528012 - 31527965
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatct 147  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  31528012 aggagttcaacaaattagggttcccataggattacatcagattcatct 31527965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 165 - 274
Target Start/End: Complemental strand, 2783804 - 2783696
Alignment:
Q  165 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctctgctgcttcgtgagttttc 264  Q
    ||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||  |||  |||||| |||||||||||| ||||    
T  2783804 gaaattagctagacatagagatacaaattaatagcatgggaaataaaattaaccatgaaaccatgttgtggctcggttctctactgcttcgtgag-tttc 2783706  T
Q  265 tgttgccttc 274  Q
    ||||||||||    
T  2783705 tgttgccttc 2783696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 18645107 - 18645187
Alignment:
Q  161 aagagaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttct 244  Q
    ||||||||||||||||||||||| ||| ||||||| ||| | |||||||||||||||||||  ||| |||||||||||| ||||    
T  18645107 aagagaaattagctagacatagagatacaaataaagagcgt-gaaaataaaattaaccatg--accgtgttgttcctcaattct 18645187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 35412303 - 35412227
Alignment:
Q  165 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttct 244  Q
    ||||||||||||||||||| ||| ||||||| ||| | |||||||||||||||||||  |||||||||||||||| ||||    
T  35412303 gaaattagctagacatagagatacaaataaagagcgt-gaaaataaaattaaccatg--accatgttgttcctcaattct 35412227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 13979113 - 13979054
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 159  Q
    |||| ||||||||||||| |||||||||||||||| ||| |||| ||||||||| |||||    
T  13979113 aggagttcaacaaattagggttcccataagattacctcagattcgtctaagtcttaacca 13979054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 11139191 - 11139238
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatct 147  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  11139191 aggagttcaacaaattagggttcccataggattacatcagattcatct 11139238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 22626935 - 22626982
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatct 147  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  22626935 aggagttcaacaaattagggttcccataggattacatcagattcatct 22626982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 31878312 - 31878352
Alignment:
Q  119 gttcccataagattacatcatattcatctaagtctcaacca 159  Q
    |||| |||||||||| |||| ||||||||||||||||||||    
T  31878312 gttctcataagattatatcagattcatctaagtctcaacca 31878352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 26809172 - 26809253
Alignment:
Q  165 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctct 246  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||    
T  26809172 gaaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacaggttgttcctcaattctct 26809253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 36843565 - 36843641
Alignment:
Q  105 ttcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca-aaagagaaattagctagacat 180  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| ||||| || |||| |||||||    
T  36843565 ttcaacaaattagagttcccacaagattacatcaaattcatctaagtctcagccacaaagaaaatttaggtagacat 36843641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 23313832 - 23313883
Alignment:
Q  108 aacaaattagagttcccataagattacatcatattcatctaagtctcaacca 159  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  23313832 aacaaattagagttcccataagattacatcggattcatctaagtctcaacca 23313883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 9765415 - 9765361
Alignment:
Q  105 ttcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 159  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||    
T  9765415 ttcaacaaattagggttctcataggattacatcatattcatctaagtctcaacca 9765361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 3862518 - 3862575
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaac 157  Q
    |||| ||||||||||||| |||| ||||||||||||| | ||||| ||||||||||||    
T  3862518 aggagttcaacaaattagggttctcataagattacattagattcaactaagtctcaac 3862575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 6966770 - 6966723
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatct 147  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  6966770 aggagttcaacaaattagggttcccataggattacatcagattcatct 6966723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 17863717 - 17863764
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatct 147  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  17863717 aggagttcaacaaattagggttcccataggattacatcagattcatct 17863764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 17866976 - 17867023
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatct 147  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  17866976 aggagttcaacaaattagggttcccataggattacatcagattcatct 17867023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 23760231 - 23760278
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatct 147  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  23760231 aggagttcaacaaattagggttcccataggattacatcagattcatct 23760278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 23107588 - 23107554
Alignment:
Q  125 ataagattacatcatattcatctaagtctcaacca 159  Q
    |||||||||||||| ||||||||||||||||||||    
T  23107588 ataagattacatcaaattcatctaagtctcaacca 23107554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 35773159 - 35773213
Alignment:
Q  105 ttcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 159  Q
    ||||||||||||||||||  ||| |||||||| | |||||||| |||||||||||    
T  35773159 ttcaacaaattagagttcttataggattacataagattcatctcagtctcaacca 35773213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 165 - 274
Target Start/End: Original strand, 28562795 - 28562903
Alignment:
Q  165 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctctgctgcttcgtgagttttc 264  Q
    ||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||  |||   ||||| |||||||||||| ||||    
T  28562795 gaaattagctagacatagagatacaaattaatagcatgggaaataaaattaaccatgaaaccatgttgtggctcgggtctctactgcttcgtgag-tttc 28562893  T
Q  265 tgttgccttc 274  Q
    ||||||||||    
T  28562894 tgttgccttc 28562903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 165 - 274
Target Start/End: Original strand, 28566363 - 28566471
Alignment:
Q  165 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctctgctgcttcgtgagttttc 264  Q
    ||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||  |||   ||||| |||||||||||| ||||    
T  28566363 gaaattagctagacatagagatacaaattaatagcatgggaaataaaattaaccatgaaaccatgttgtggctcgggtctctactgcttcgtgag-tttc 28566461  T
Q  265 tgttgccttc 274  Q
    ||||||||||    
T  28566462 tgttgccttc 28566471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 42062628 - 42062548
Alignment:
Q  161 aagagaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttct 244  Q
    ||||||||||||||||||||||| ||| ||||||| ||| | |||||||||||||||||||  |||||||||||||||| ||||    
T  42062628 aagagaaattagctagacatagagatacaaataaagagcgt-gaaaataaaattaaccatg--accatgttgttcctcaattct 42062548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 34405471 - 34405424
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatct 147  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  34405471 aggagttcaacaaattagggttcccataggattacatcagattcatct 34405424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 20189867 - 20189939
Alignment:
Q  165 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcct 237  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  20189867 gaaattagctagacatagagatacacataaatagcatggaaaataaaattaaccatgaaaccatgttgttcct 20189939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 22146124 - 22146052
Alignment:
Q  165 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcct 237  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  22146124 gaaattagctagacatagagatacacataaatagcatggaaaataaaattaaccatgaaaccatgttgttcct 22146052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 16731057 - 16730976
Alignment:
Q  165 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctct 246  Q
    ||||||||||||||||||| ||| |||||||||||||| ||| ||||||||||||||||| |||||||||||||| ||||||    
T  16731057 gaaattagctagacatagagatacaaataaatagcatgaaaactaaaattaaccatgaaaacatgttgttcctcaattctct 16730976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 15537906 - 15537847
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 159  Q
    |||| ||||||||||||| ||||||||| |||||||||| |||||||| |||||||||||    
T  15537906 aggagttcaacaaattagggttcccatatgattacatcaaattcatctcagtctcaacca 15537847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 19665292 - 19665346
Alignment:
Q  105 ttcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 159  Q
    ||||||||||||| ||||||||| |||||||||| |||||||| |||||||||||    
T  19665292 ttcaacaaattagggttcccataggattacatcagattcatctcagtctcaacca 19665346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 1838096 - 1838037
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 159  Q
    |||| ||||| ||||||| ||||||||| |||||||||| |||||||| |||||||||||    
T  1838096 aggagttcaataaattagggttcccataggattacatcagattcatctcagtctcaacca 1838037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 15534711 - 15534652
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 159  Q
    |||| ||||||||||||| ||||||||| |||||||||| |||||||| | |||||||||    
T  15534711 aggagttcaacaaattagggttcccataggattacatcagattcatctcaatctcaacca 15534652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 20527785 - 20527852
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaaccaaaagagaa 167  Q
    |||| ||||||| ||||  |||||||||| ||||||||| ||||||||| ||||||||||||| ||||    
T  20527785 aggagttcaacacattaaggttcccataaaattacatcagattcatctaggtctcaaccaaaaaagaa 20527852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 13017812 - 13017859
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatct 147  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  13017812 aggagttcaacaaattagggttcccataggattacatcagattcatct 13017859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 14790241 - 14790194
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatct 147  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  14790241 aggagttcaacaaattagggttcccataggattacatcagattcatct 14790194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 14795269 - 14795222
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatct 147  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  14795269 aggagttcaacaaattagggttcccataggattacatcagattcatct 14795222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 32704876 - 32704923
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatct 147  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  32704876 aggagttcaacaaattagggttcccataggattacatcagattcatct 32704923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 16883299 - 16883241
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacc 158  Q
    |||| ||||||||||||| |||| ||||| ||||||||| |||||| ||||||| ||||    
T  16883299 aggagttcaacaaattagggttctcataaaattacatcagattcatttaagtcttaacc 16883241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 6432 - 6491
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 159  Q
    |||| ||||||||||||  |||||||||||||||||||| |||||||||| |||||||||    
T  6432 aggagttcaacaaattaaggttcccataagattacatcagattcatctaaatctcaacca 6491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 12575922 - 12575981
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 159  Q
    |||| ||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||    
T  12575922 aggagttcaacaaattagggttcctataggattacatcagattcatctaagtctcaacca 12575981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 13096653 - 13096594
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 159  Q
    |||| ||||| |||| || ||||||||| ||||||||||  |||||||||||||||||||    
T  13096653 aggagttcaataaatcagggttcccataggattacatcaggttcatctaagtctcaacca 13096594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 1936250 - 1936191
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 159  Q
    |||| ||||||||||||  |||||||||||||||||| | ||||||||||||||||||||    
T  1936250 aggagttcaacaaattatggttcccataagattacatgagattcatctaagtctcaacca 1936191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 16190799 - 16190858
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 159  Q
    |||| ||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||    
T  16190799 aggagttcaacaaattagggttcctataagattacatcagattcatctaagactcaacca 16190858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 10759744 - 10759697
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatct 147  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  10759744 aggagttcaacaaattagggttcccataggattacatcagattcatct 10759697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 34065962 - 34065908
Alignment:
Q  105 ttcaacaaattagagttcccataagattacatcatattcatctaagtctcaacca 159  Q
    |||||||||||||  |||||||||||||||||||  |||||| |||||| |||||    
T  34065962 ttcaacaaattaggattcccataagattacatcaagttcatcaaagtcttaacca 34065908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 23990710 - 23990754
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattca 144  Q
    |||| ||||||||||||| ||||||||||||||| |||| |||||    
T  23990710 aggagttcaacaaattagtgttcccataagattaaatcagattca 23990754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 267 - 314
Alignment:
Q  100 aggaattcaacaaattagagttcccataagattacatcatattcatct 147  Q
    |||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  267 aggagttcaacaaattagggttcccataggattacatcagattcatct 314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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