View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1317_low_28 (Length: 347)

Name: NF1317_low_28
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1317_low_28
NF1317_low_28
[»] chr6 (3 HSPs)
chr6 (123-253)||(13929393-13929523)
chr6 (123-253)||(14043583-14043713)
chr6 (128-242)||(13885032-13885147)


Alignment Details
Target: chr6 (Bit Score: 119; Significance: 9e-61; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 123 - 253
Target Start/End: Complemental strand, 13929523 - 13929393
Alignment:
Q  123 ataatgtggagtggtgaatcggatgccctccacgttgattccttgtttgaatacaccgattcctattttgtcaataaatgtttgttttggagacctgata 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13929523 ataatgtggagtggtgaatcggatgctctccacgttgattccttgtttgaatacaccgattcctattttgtcaataaatgtttgtttcggagacctgata 13929424  T
Q  223 gtgtacccccgacacaattcaatttgtttgt 253  Q
    ||| |||||||||||||||||||||||||||    
T  13929423 gtgaacccccgacacaattcaatttgtttgt 13929393  T

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Target: chr6; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 123 - 253
Target Start/End: Complemental strand, 14043713 - 14043583
Alignment:
Q  123 ataatgtggagtggtgaatcggatgccctccacgttgattccttgtttgaatacaccgattcctattttgtcaataaatgtttgttttggagacctgata 222  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  14043713 ataatgtggagtggtgaatcggatgctctccacgttgattccttgtttgaatacaccgattcctattttgtcaataaatgtttgtttccgagacctgata 14043614  T
Q  223 gtgtacccccgacacaattcaatttgtttgt 253  Q
    |||||||||||||||||||||||||||||||    
T  14043613 gtgtacccccgacacaattcaatttgtttgt 14043583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 13885032 - 13885147
Alignment:
Q  128 gtggagtggtgaatcggatgccctccacgttgattccttgtttgaatacaccgattcctattttgtcaat-aaatgtttgttttggagacctgatagtgt 226  Q
    ||||| |||||||||||||| |||||| |||||||||| ||||||||| || || ||||||||| ||||| ||| ||||||||||||| || |||| |||    
T  13885032 gtggattggtgaatcggatgtcctccatgttgattcctggtttgaataaactgactcctattttatcaataaaaagtttgttttggaggccagataatgt 13885131  T
Q  227 acccccgacacaattc 242  Q
    || | | |||||||||    
T  13885132 acacaccacacaattc 13885147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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