View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1317_low_29 (Length: 334)

Name: NF1317_low_29
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1317_low_29
NF1317_low_29
[»] chr8 (10 HSPs)
chr8 (17-195)||(33926648-33926826)
chr8 (194-326)||(14678010-14678142)
chr8 (194-326)||(5657771-5657903)
chr8 (193-326)||(27541548-27541680)
chr8 (194-326)||(31100861-31100993)
chr8 (193-269)||(23738656-23738731)
chr8 (194-269)||(24788079-24788154)
chr8 (217-326)||(5662589-5662697)
chr8 (194-247)||(33689362-33689415)
chr8 (194-253)||(8158461-8158520)
[»] chr3 (12 HSPs)
chr3 (194-321)||(37982349-37982476)
chr3 (201-326)||(19882100-19882225)
chr3 (194-326)||(53973275-53973407)
chr3 (194-326)||(31685077-31685209)
chr3 (193-326)||(17681766-17681898)
chr3 (194-326)||(2549937-2550068)
chr3 (194-326)||(12538625-12538756)
chr3 (194-326)||(24761887-24762019)
chr3 (194-326)||(24815915-24816047)
chr3 (194-326)||(53352750-53352882)
chr3 (194-326)||(53027741-53027873)
chr3 (194-222)||(32015784-32015812)
[»] chr7 (5 HSPs)
chr7 (194-326)||(43071371-43071503)
chr7 (194-326)||(1262088-1262220)
chr7 (194-326)||(26909970-26910102)
chr7 (194-326)||(48849796-48849928)
chr7 (201-270)||(22007347-22007416)
[»] chr5 (8 HSPs)
chr5 (194-326)||(9043802-9043934)
chr5 (194-326)||(7473478-7473610)
chr5 (194-326)||(22009517-22009649)
chr5 (195-326)||(30442536-30442667)
chr5 (205-291)||(26840988-26841074)
chr5 (192-270)||(19085422-19085500)
chr5 (200-326)||(22004446-22004571)
chr5 (194-252)||(30463113-30463172)
[»] chr2 (6 HSPs)
chr2 (194-326)||(23348969-23349101)
chr2 (194-321)||(18355307-18355434)
chr2 (188-321)||(10328886-10329019)
chr2 (205-326)||(12741699-12741820)
chr2 (194-326)||(1615904-1616035)
chr2 (195-326)||(24454516-24454646)
[»] scaffold0596 (1 HSPs)
scaffold0596 (194-326)||(654-786)
[»] scaffold0096 (1 HSPs)
scaffold0096 (194-326)||(27410-27541)
[»] scaffold0035 (1 HSPs)
scaffold0035 (194-326)||(35063-35195)
[»] chr4 (3 HSPs)
chr4 (193-326)||(29863350-29863483)
chr4 (194-255)||(12506436-12506497)
chr4 (211-269)||(24260237-24260294)
[»] scaffold0045 (1 HSPs)
scaffold0045 (194-326)||(11623-11755)
[»] chr6 (7 HSPs)
chr6 (194-318)||(10092512-10092636)
chr6 (201-326)||(33045420-33045545)
chr6 (194-306)||(3065698-3065809)
chr6 (201-326)||(8976411-8976536)
chr6 (194-270)||(16246702-16246778)
chr6 (201-270)||(30908414-30908483)
chr6 (195-269)||(4660222-4660295)
[»] chr1 (2 HSPs)
chr1 (198-270)||(50990911-50990983)
chr1 (194-230)||(25223219-25223255)
[»] scaffold0157 (1 HSPs)
scaffold0157 (194-255)||(13980-14041)
[»] scaffold0475 (1 HSPs)
scaffold0475 (203-269)||(7520-7585)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 33926826 - 33926648
Alignment:
Q  17 aatctggacggttcaccaaaaccagctcatcggtttttccgttttccccagtttttatcggttttcttggttcctttctagttctatagacttctagttt 116  Q
    |||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  33926826 aatctggacggttcaccaaaaccaactcatcggtttttccatttttcccagtttatatcggttttcttggttcctttctagttctatagacttctggttt 33926727  T
Q  117 taaagtgttgtccggaccggtgtctggtccagttctcgggtcgactggttgaatcagtccggttcgatttttaaaacat 195  Q
    ||||||||||||||||||||||| ||||||||||| |||||| |||||||||||| |||||||||||||||||||||||    
T  33926726 taaagtgttgtccggaccggtgtttggtccagttcccgggtcaactggttgaatcggtccggttcgatttttaaaacat 33926648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 14678142 - 14678010
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    |||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14678142 atcatacttatatctaatctttgttaacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 14678043  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||||||||||||||||||||| ||||    
T  14678042 tcatttggctaagcatgcatctcatcctttgat 14678010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 194 - 326
Target Start/End: Original strand, 5657771 - 5657903
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    |||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  5657771 atcatacttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaacctaaatagttttggctccaaaacaagggaggccgttggatctca 5657870  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||| ||||||||||||||||||| ||||    
T  5657871 tcatttggttaagcatgcatctcatcctttgat 5657903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 193 - 326
Target Start/End: Complemental strand, 27541680 - 27541548
Alignment:
Q  193 catcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctc 292  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||| ||||||||||  ||||||||||||    
T  27541680 catcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctcc-aaacaagggacgccgttggatctc 27541582  T
Q  293 atcatttggctaagcatgcatctcatcctatgat 326  Q
    ||||||||||||||||||||||||||||| ||||    
T  27541581 atcatttggctaagcatgcatctcatcctttgat 27541548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 31100993 - 31100861
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  31100993 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatctca 31100894  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||| |||||||| |||||||||| ||||    
T  31100893 tcatttggttaagcatgtatctcatcctttgat 31100861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 23738656 - 23738731
Alignment:
Q  193 catcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaa 269  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||| | ||||||||||||    
T  23738656 catcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 23738731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 24788154 - 24788079
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaa 269  Q
    |||||||||||||||||||||  ||||||||||||||||  ||||||||||||||||||| | |||||||| ||||    
T  24788154 atcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaattagttttggcgccaa 24788079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 326
Target Start/End: Original strand, 5662589 - 5662697
Alignment:
Q  217 ttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttggctaagcatgcatctc 316  Q
    |||| |||||||||||  |||||||||||||||||| ||  ||| ||| ||||  |||||  | ||||| |||||||||||||||||| |||| ||||||    
T  5662589 ttaatattgctaatgactttgcaaaccctaaacctagattttttaggcgccaat-caaggaggtccgttagatctcatcatttggctaggcattcatctc 5662687  T
Q  317 atcctatgat 326  Q
    ||||| ||||    
T  5662688 atcctttgat 5662697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 33689415 - 33689362
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaa 247  Q
    ||||||| |||||||||||||||||||||||||||||||  ||||| |||||||    
T  33689415 atcatacctatatctaatctttgttaacattgctaatgactttgcagaccctaa 33689362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 8158461 - 8158520
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaa 253  Q
    |||||||||||||||||| |||||||||| ||||||| |  ||||||| |||||||||||    
T  8158461 atcatacttatatctaatttttgttaacaatgctaattaccttgcaaaacctaaacctaa 8158520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 194 - 321
Target Start/End: Original strand, 37982349 - 37982476
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37982349 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 37982448  T
Q  294 tcatttggctaagcatgcatctcatcct 321  Q
    ||||||||||||||||||||||||||||    
T  37982449 tcatttggctaagcatgcatctcatcct 37982476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 201 - 326
Target Start/End: Complemental strand, 19882225 - 19882100
Alignment:
Q  201 ttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttg 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19882225 ttatatctaatctttgttaacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttg 19882126  T
Q  301 gctaagcatgcatctcatcctatgat 326  Q
    ||||||||||||||||||||| ||||    
T  19882125 gctaagcatgcatctcatcctttgat 19882100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 53973407 - 53973275
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  53973407 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatctca 53973308  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||||||| ||||||||||||| ||||    
T  53973307 tcatttggctaagcctgcatctcatcctttgat 53973275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 194 - 326
Target Start/End: Original strand, 31685077 - 31685209
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||    
T  31685077 atcatacttatatctaatctttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttgaatctca 31685176  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||||||||||||||||||||| ||||    
T  31685177 tcatttggctaagcatgcatctcatcctttgat 31685209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 193 - 326
Target Start/End: Original strand, 17681766 - 17681898
Alignment:
Q  193 catcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctc 292  Q
    ||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||    
T  17681766 catcatacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaaggggggccgttggatctc 17681864  T
Q  293 atcatttggctaagcatgcatctcatcctatgat 326  Q
    ||||||||| ||||||||||||||||||| ||||    
T  17681865 atcatttggttaagcatgcatctcatcctttgat 17681898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 194 - 326
Target Start/End: Original strand, 2549937 - 2550068
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    |||||||||||||||||||||  ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |    
T  2549937 atcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaaatgattttggctccaaaacaagggaggccgttggatct-a 2550035  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||||||||||||||||||||| ||||    
T  2550036 tcatttggctaagcatgcatctcatcctttgat 2550068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 12538756 - 12538625
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    |||||||||||||||||||||||||||| || |||||||  ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  12538756 atcatacttatatctaatctttgttaacctttctaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaagggaggccgttggatctca 12538658  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    ||||||||||||||||||||| |||||| ||||    
T  12538657 tcatttggctaagcatgcatcacatcctttgat 12538625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 24762019 - 24761887
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    ||||||||||||||||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||    
T  24762019 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctca 24761920  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||| ||||||||||||||||| ||||    
T  24761919 tcatttggctcagcatgcatctcatcctttgat 24761887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 194 - 326
Target Start/End: Original strand, 24815915 - 24816047
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    ||||||||||||||||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | |  | |||||||||||||    
T  24815915 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctggccgttggatctca 24816014  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||| ||||||||||||||||| ||||    
T  24816015 tcatttggctcagcatgcatctcatcctttgat 24816047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 53352882 - 53352750
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    ||||||||||||||||||| || ||||||||||||||||  |||||||| ||||||||||| ||||||||||||||||| | |  |||||||||||||||    
T  53352882 atcatacttatatctaatccttcttaacattgctaatgactttgcaaactctaaacctaaacggttttggctccaaaacgatgctgaccgttggatctca 53352783  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||| ||  ||||||||||||| ||||    
T  53352782 tcatttggctcagtgtgcatctcatcctttgat 53352750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 53027873 - 53027741
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    ||||||||||||||||||| || |||||| ||||||| |  || ||||||||||||||||||||||||| ||||||||  | |  |||||||||||||||    
T  53027873 atcatacttatatctaatccttcttaacactgctaataactttacaaaccctaaacctaaatggttttgactccaaaatgatgctgaccgttggatctca 53027774  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||| ||||||||||||||||| ||||    
T  53027773 tcatttggctcagcatgcatctcatcctttgat 53027741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 32015812 - 32015784
Alignment:
Q  194 atcatacttatatctaatctttgttaaca 222  Q
    |||||||||||||||||||||||||||||    
T  32015812 atcatacttatatctaatctttgttaaca 32015784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 43071503 - 43071371
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43071503 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 43071404  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||||||||||||||||||||| ||||    
T  43071403 tcatttggctaagcatgcatctcatcctttgat 43071371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 194 - 326
Target Start/End: Original strand, 1262088 - 1262220
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  1262088 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaagccgttggatctca 1262187  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||||||||||||||||||||| ||||    
T  1262188 tcatttggctaagcatgcatctcatcctttgat 1262220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 26910102 - 26909970
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    ||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |    
T  26910102 atcatacttatatctaatctttgttaacattgctaataactttgcaaaccctaaacctaaatggatttggctccaaaacaagggagaccattggatctta 26910003  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||||||||||||||||||||| ||||    
T  26910002 tcatttggctaagcatgcatctcatcctttgat 26909970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 48849928 - 48849796
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    |||||||||||||||||||||||||||||||||||||||  ||| ||| ||||||||||||||||||||||||||||||||||||    |||||||||||    
T  48849928 atcatacttatatctaatctttgttaacattgctaatgactttgtaaatcctaaacctaaatggttttggctccaaaacaagggattttgttggatctca 48849829  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||||||||||||||||||||| ||||    
T  48849828 tcatttggctaagcatgcatctcatcctttgat 48849796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 22007347 - 22007416
Alignment:
Q  201 ttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaa 270  Q
    ||||||||||| ||||||||||||||||||||  || ||||||||||| |||||||||||||||||||||    
T  22007347 ttatatctaatttttgttaacattgctaatgactttacaaaccctaaatctaaatggttttggctccaaa 22007416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 194 - 326
Target Start/End: Original strand, 9043802 - 9043934
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9043802 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 9043901  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||||||||||||||||||||| ||||    
T  9043902 tcatttggctaagcatgcatctcatcctttgat 9043934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 7473610 - 7473478
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7473610 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 7473511  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||| ||||||||||||||||||||| ||||    
T  7473510 tcatttagctaagcatgcatctcatcctttgat 7473478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 22009649 - 22009517
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22009649 atcatacttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 22009550  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||||||||||||||||||||| ||||    
T  22009549 tcatttggctaagcatgcatctcatcctttgat 22009517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 195 - 326
Target Start/End: Complemental strand, 30442667 - 30442536
Alignment:
Q  195 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcat 294  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30442667 tcatgcttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 30442568  T
Q  295 catttggctaagcatgcatctcatcctatgat 326  Q
    ||||||||||||||||||||||||||| ||||    
T  30442567 catttggctaagcatgcatctcatcctttgat 30442536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 205 - 291
Target Start/End: Complemental strand, 26841074 - 26840988
Alignment:
Q  205 atctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatct 291  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26841074 atctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatct 26840988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 192 - 270
Target Start/End: Complemental strand, 19085500 - 19085422
Alignment:
Q  192 acatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaa 270  Q
    ||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  19085500 acatcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 19085422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 200 - 326
Target Start/End: Complemental strand, 22004571 - 22004446
Alignment:
Q  200 cttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcattt 299  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||| || |||| ||| || || |||||  | |||||||||||||||||||    
T  22004571 cttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctagatagtttaggcgcc-aatcaaggtggtccgttggatctcatcattt 22004473  T
Q  300 ggctaagcatgcatctcatcctatgat 326  Q
    |||| ||||| ||| ||||||| ||||    
T  22004472 ggctcagcattcatatcatcctttgat 22004446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 30463172 - 30463113
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgc-aaaccctaaaccta 252  Q
    ||||||||||||||||||||||||||||| ||||||| |  |||| ||||||||||||||    
T  30463172 atcatacttatatctaatctttgttaacaatgctaattaccttgcaaaaccctaaaccta 30463113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 23349101 - 23348969
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23349101 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 23349002  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||||||||||||||||||||| ||||    
T  23349001 tcatttggctaagcatgcatctcatcctttgat 23348969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 194 - 321
Target Start/End: Complemental strand, 18355434 - 18355307
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  18355434 atcatacttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggtcgttggatctca 18355335  T
Q  294 tcatttggctaagcatgcatctcatcct 321  Q
    ||||||||||||||||||||||||||||    
T  18355334 tcatttggctaagcatgcatctcatcct 18355307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 188 - 321
Target Start/End: Complemental strand, 10329019 - 10328886
Alignment:
Q  188 taaaacatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttgg 287  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||| |||||||    
T  10329019 taaaatatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaattgttttggttctaaaacaagggaggccgttgg 10328920  T
Q  288 atctcatcatttggctaagcatgcatctcatcct 321  Q
    ||||||||||||||||||||||||||||||||||    
T  10328919 atctcatcatttggctaagcatgcatctcatcct 10328886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 205 - 326
Target Start/End: Original strand, 12741699 - 12741820
Alignment:
Q  205 atctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttggcta 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  12741699 atctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaaaggaggccgttggatctcatcatttggcta 12741798  T
Q  305 agcatgcatctcatcctatgat 326  Q
    ||||||||||||||||| ||||    
T  12741799 agcatgcatctcatcctttgat 12741820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 1616035 - 1615904
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    ||||| |||||||| ||||||||||||||||| ||||||  ||| || |  |||| |||||||||||| |||||||| ||||||||| ||||||||| ||    
T  1616035 atcatccttatatccaatctttgttaacattgttaatgactttgtaaccattaaatctaaatggtttttgctccaaa-caagggagatcgttggatcgca 1615937  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||||||||||||||||||||| ||||    
T  1615936 tcatttggctaagcatgcatctcatcctttgat 1615904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 326
Target Start/End: Original strand, 24454516 - 24454646
Alignment:
Q  195 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcat 294  Q
    ||||||||||||||||||||  |||||||||||||    |||||||| |||||||||||||  ||| ||| || ||||||||  | ||||||||||||||    
T  24454516 tcatacttatatctaatcttaattaacattgctaagaccattgcaaatcctaaacctaaattttttaggcgcc-aaacaaggagggccgttggatctcat 24454614  T
Q  295 catttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||   ||| ||||||||||| ||||    
T  24454615 catttggcttgacattcatctcatcctttgat 24454646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 194 - 326
Target Start/End: Original strand, 654 - 786
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||    
T  654 atcatacttatatctgatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttgactccaaaataagggaggccgttggatctca 753  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||||||||||||||||||||| ||||    
T  754 tcatttggctaagcatgcatctcatcctttgat 786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 194 - 326
Target Start/End: Original strand, 27410 - 27541
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  27410 atcatacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaagggaggccgttggatctca 27508  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||||||||||||||||||||| ||||    
T  27509 tcatttggctaagcatgcatctcatcctttgat 27541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 194 - 326
Target Start/End: Original strand, 35063 - 35195
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  35063 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggttgttggatctca 35162  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||||||||||||||||||||||| ||||    
T  35163 tcatttggctaagcatgcatctcatcctttgat 35195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 193 - 326
Target Start/End: Complemental strand, 29863483 - 29863350
Alignment:
Q  193 catcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctc 292  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29863483 catcatacttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaaaacaagggaggccgttggatctc 29863384  T
Q  293 atcatttggctaagcatgcatctcatcctatgat 326  Q
    ||||||||||| ||||||||||||||||| ||||    
T  29863383 atcatttggctgagcatgcatctcatcctttgat 29863350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 12506436 - 12506497
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaat 255  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||    
T  12506436 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaat 12506497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 24260237 - 24260294
Alignment:
Q  211 tctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaa 269  Q
    ||||||||||||||||||||||  ||||||||||||| |||||| | ||||||||||||    
T  24260237 tctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 24260294  T

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Target: scaffold0045 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 11755 - 11623
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||    
T  11755 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaactggttttgactccaaaacaagggaggccgttggatctca 11656  T
Q  294 tcatttggctaagcatgcatctcatcctatgat 326  Q
    |||||||| ||||||||||||||||||| ||||    
T  11655 tcatttggttaagcatgcatctcatcctttgat 11623  T

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Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 194 - 318
Target Start/End: Original strand, 10092512 - 10092636
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  10092512 atcatacttatatctaatctttgttaacattgttaatgactttgcaaaccctaaatctaaatggttttggctccaaaacaagggaggccgttggatctca 10092611  T
Q  294 tcatttggctaagcatgcatctcat 318  Q
    |||||||||||||||||||||||||    
T  10092612 tcatttggctaagcatgcatctcat 10092636  T

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Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 201 - 326
Target Start/End: Complemental strand, 33045545 - 33045420
Alignment:
Q  201 ttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttg 300  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  33045545 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttggatctcatcatttg 33045446  T
Q  301 gctaagcatgcatctcatcctatgat 326  Q
    | ||||||||||||||||||| ||||    
T  33045445 gttaagcatgcatctcatcctttgat 33045420  T

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Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 194 - 306
Target Start/End: Original strand, 3065698 - 3065809
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 293  Q
    |||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3065698 atcatacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctcc-aaacaagggagaccgttggatctca 3065796  T
Q  294 tcatttggctaag 306  Q
    |||||||||||||    
T  3065797 tcatttggctaag 3065809  T

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Target: chr6; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 201 - 326
Target Start/End: Original strand, 8976411 - 8976536
Alignment:
Q  201 ttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttg 300  Q
    |||||||||||||||||||| |||||||||||  || ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||     
T  8976411 ttatatctaatctttgttaatattgctaatgactttacaaactctaaacctaaatggttttggctccaaaataagggagaccgttggatctcattattta 8976510  T
Q  301 gctaagcatgcatctcatcctatgat 326  Q
    ||||| ||||||||||||||| ||||    
T  8976511 gctaaacatgcatctcatcctttgat 8976536  T

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Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 16246702 - 16246778
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaa 270  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||||||||||| ||||||||||||||||||||||    
T  16246702 atcatacttatatctaatctttgtgaacattgctaatgactttgcaaaccctaatcctaaatggttttggctccaaa 16246778  T

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Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 30908483 - 30908414
Alignment:
Q  201 ttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaa 270  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||    
T  30908483 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaatctaaatggttttggctccaaa 30908414  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 4660295 - 4660222
Alignment:
Q  195 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaa 269  Q
    |||||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||| | ||||||||||||    
T  4660295 tcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 4660222  T

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Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 50990911 - 50990983
Alignment:
Q  198 tacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaa 270  Q
    |||||||||||||||||||||||||||||| || |  ||||||||||||||||||||||||||||||||||||    
T  50990911 tacttatatctaatctttgttaacattgctgataactttgcaaaccctaaacctaaatggttttggctccaaa 50990983  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 25223219 - 25223255
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaat 230  Q
    ||||||||||||||||||||||||||||| |||||||    
T  25223219 atcatacttatatctaatctttgttaacaatgctaat 25223255  T

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Target: scaffold0157 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 14041 - 13980
Alignment:
Q  194 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaat 255  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||    
T  14041 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaat 13980  T

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Target: scaffold0475 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 7585 - 7520
Alignment:
Q  203 atatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaa 269  Q
    |||| |||||||||||||||||||||||||  ||||||||||||| |||||| | ||||||||||||    
T  7585 atatataatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 7520  T

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