View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_low_37 (Length: 324)
Name: NF1317_low_37
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_low_37 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 97 - 324
Target Start/End: Complemental strand, 28328985 - 28328757
Alignment:
| Q |
97 |
gttcaaccccccgatgttcccatctaacctctgcatgaatccattcatttactnnnnnnnttccgcccatgttgtagtttggcttaaattccagcttcat |
196 |
Q |
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| T |
28328985 |
gttcaaccccccgatgttcccatctaacctctgcatgaatccattcatttactaaaaaaattccgcccatgttgtagtttggcttaaattccagcttcat |
28328886 |
T |
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| Q |
197 |
atcatacaaatatgtatgatgagtccacattttaccaaacttagtcaggag-atataaagatcatatttgttgccatgtatgatcagagtgggacttgtc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28328885 |
atcatacaaatatgtatgatgagtccacattttaccaaacttagtcaggagaatataaagatcatatttgttgccatggatgatcagagtgggacttgtc |
28328786 |
T |
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| Q |
296 |
ttatgtaaatcaaaatcattactggttgt |
324 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
28328785 |
ttatgtaaatcaaaatcattactggttgt |
28328757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 97 - 324
Target Start/End: Complemental strand, 28506621 - 28506393
Alignment:
| Q |
97 |
gttcaaccccccgatgttcccatctaacctctgcatgaatccattcatttactnnnnnnnttccgcccatgttgtagtttggcttaaattccagcttcat |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28506621 |
gttcaaccccccgatgttcccatctaacctctgcatgaatccattcatttactaaaaaaattccgcccatgttgtagtttggcttaaattccagcttcat |
28506522 |
T |
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| Q |
197 |
atcatacaaatatgtatgatgagtccacattttaccaaacttagtcaggag-atataaagatcatatttgttgccatgtatgatcagagtgggacttgtc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28506521 |
atcatacaaatatgtatgatgagtccacattttaccaaacttagtcaggagaatataaagatcatatttgttgccatggatgatcagagtgggacttgtc |
28506422 |
T |
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| Q |
296 |
ttatgtaaatcaaaatcattactggttgt |
324 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
28506421 |
ttatgtaaatcaaaatcattactggttgt |
28506393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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