View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1317_low_4 (Length: 628)

Name: NF1317_low_4
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1317_low_4
NF1317_low_4
[»] chr8 (20 HSPs)
chr8 (93-477)||(13331567-13331946)
chr8 (93-477)||(9466609-9466985)
chr8 (93-477)||(39660218-39660599)
chr8 (93-427)||(5827554-5827884)
chr8 (93-173)||(30645251-30645331)
chr8 (478-541)||(45451772-45451835)
chr8 (93-174)||(31984766-31984847)
chr8 (476-532)||(30436476-30436532)
chr8 (476-532)||(35813445-35813501)
chr8 (476-532)||(3940709-3940764)
chr8 (97-173)||(31981126-31981202)
chr8 (93-169)||(27863815-27863892)
chr8 (476-532)||(3654317-3654372)
chr8 (477-541)||(6142935-6142998)
chr8 (170-258)||(14627143-14627231)
chr8 (97-169)||(14187782-14187855)
chr8 (97-169)||(22654043-22654116)
chr8 (476-539)||(2349732-2349793)
chr8 (97-169)||(20262338-20262409)
chr8 (97-169)||(21048968-21049039)
[»] chr4 (23 HSPs)
chr4 (93-477)||(15850651-15851030)
chr4 (93-429)||(56089575-56089907)
chr4 (93-427)||(13978662-13978991)
chr4 (93-427)||(19928432-19928761)
chr4 (93-431)||(26703752-26704085)
chr4 (93-171)||(11702848-11702926)
chr4 (93-173)||(10385728-10385808)
chr4 (95-359)||(23652884-23653136)
chr4 (476-541)||(7138473-7138538)
chr4 (476-532)||(17543787-17543843)
chr4 (93-161)||(33400593-33400661)
chr4 (476-532)||(39345871-39345927)
chr4 (114-173)||(11560591-11560650)
chr4 (93-146)||(10247625-10247678)
chr4 (476-532)||(2323808-2323863)
chr4 (476-532)||(20034310-20034365)
chr4 (479-532)||(47295607-47295659)
chr4 (476-532)||(951413-951468)
chr4 (476-532)||(27870062-27870117)
chr4 (476-532)||(45522540-45522595)
chr4 (476-532)||(54134504-54134559)
chr4 (507-541)||(44341263-44341297)
chr4 (327-359)||(14701511-14701543)
[»] chr2 (19 HSPs)
chr2 (93-477)||(38316308-38316688)
chr2 (97-427)||(40678037-40678364)
chr2 (285-429)||(9748056-9748200)
chr2 (312-429)||(30994202-30994319)
chr2 (476-534)||(26556499-26556557)
chr2 (93-173)||(1503694-1503774)
chr2 (93-173)||(4577630-4577710)
chr2 (93-173)||(1506898-1506978)
chr2 (93-173)||(38326147-38326227)
chr2 (93-173)||(38326532-38326612)
chr2 (476-532)||(15560585-15560640)
chr2 (476-532)||(21747456-21747511)
chr2 (476-532)||(25096343-25096398)
chr2 (476-532)||(29201425-29201480)
chr2 (93-164)||(30719563-30719632)
chr2 (478-532)||(40861054-40861107)
chr2 (476-541)||(4470975-4471040)
chr2 (251-359)||(24385577-24385685)
chr2 (476-532)||(40000806-40000860)
[»] chr7 (21 HSPs)
chr7 (88-477)||(38430874-38431255)
chr7 (93-477)||(43548673-43549050)
chr7 (93-428)||(12803525-12803855)
chr7 (93-431)||(6963811-6964144)
chr7 (97-427)||(44018057-44018383)
chr7 (93-424)||(26152682-26153008)
chr7 (93-429)||(3541429-3541759)
chr7 (254-384)||(28578315-28578447)
chr7 (93-190)||(22083703-22083796)
chr7 (476-532)||(10993225-10993281)
chr7 (476-532)||(1873675-1873730)
chr7 (476-532)||(23025201-23025256)
chr7 (476-532)||(39494058-39494114)
chr7 (170-295)||(17601351-17601473)
chr7 (93-137)||(23467393-23467437)
chr7 (478-532)||(16526229-16526282)
chr7 (115-173)||(26182080-26182138)
chr7 (115-232)||(28578198-28578309)
chr7 (97-169)||(22232892-22232965)
chr7 (97-169)||(22253774-22253847)
chr7 (97-169)||(22257038-22257111)
[»] chr5 (36 HSPs)
chr5 (93-477)||(2500269-2500646)
chr5 (93-429)||(33321185-33321516)
chr5 (93-424)||(33920672-33920999)
chr5 (93-425)||(26337512-26337840)
chr5 (93-431)||(9690286-9690620)
chr5 (197-426)||(35432836-35433063)
chr5 (93-173)||(34653016-34653096)
chr5 (478-541)||(6453052-6453115)
chr5 (253-369)||(36330329-36330447)
chr5 (88-296)||(1810664-1810868)
chr5 (93-164)||(3194945-3195016)
chr5 (476-532)||(6238221-6238277)
chr5 (476-532)||(6899931-6899987)
chr5 (93-173)||(17944428-17944508)
chr5 (93-173)||(19685945-19686027)
chr5 (93-173)||(19689328-19689410)
chr5 (478-532)||(24477324-24477378)
chr5 (476-532)||(4699939-4699995)
chr5 (476-532)||(35838146-35838202)
chr5 (476-532)||(6955801-6955856)
chr5 (476-532)||(9996279-9996334)
chr5 (476-532)||(10642055-10642110)
chr5 (476-532)||(21731753-21731808)
chr5 (476-532)||(35038762-35038817)
chr5 (476-532)||(38356035-38356090)
chr5 (97-169)||(25185167-25185240)
chr5 (476-532)||(36016310-36016365)
chr5 (97-173)||(2453114-2453186)
chr5 (479-532)||(1845461-1845513)
chr5 (476-541)||(33908129-33908193)
chr5 (260-359)||(25184989-25185088)
chr5 (476-532)||(42860325-42860380)
chr5 (476-539)||(38976251-38976313)
chr5 (507-541)||(31230322-31230356)
chr5 (97-169)||(4732096-4732169)
chr5 (331-359)||(16090911-16090939)
[»] chr1 (15 HSPs)
chr1 (88-431)||(18391917-18392255)
chr1 (93-477)||(6195318-6195675)
chr1 (97-427)||(33897853-33898179)
chr1 (97-427)||(23441549-23441875)
chr1 (93-423)||(34552945-34553275)
chr1 (172-427)||(50197252-50197506)
chr1 (93-296)||(3087986-3088189)
chr1 (476-532)||(12745616-12745672)
chr1 (476-532)||(12756605-12756661)
chr1 (476-532)||(9660837-9660892)
chr1 (476-532)||(33189065-33189120)
chr1 (476-532)||(42763263-42763318)
chr1 (476-532)||(43781181-43781236)
chr1 (476-532)||(45757252-45757307)
chr1 (284-367)||(13795388-13795473)
[»] chr6 (24 HSPs)
chr6 (93-429)||(28894742-28895073)
chr6 (93-428)||(35027394-35027725)
chr6 (93-475)||(33679449-33679824)
chr6 (93-422)||(12746338-12746663)
chr6 (172-477)||(11296383-11296684)
chr6 (172-429)||(15579218-15579474)
chr6 (88-173)||(17696366-17696451)
chr6 (93-173)||(34502120-34502200)
chr6 (93-173)||(31123207-31123287)
chr6 (93-173)||(31262548-31262628)
chr6 (93-173)||(2331059-2331139)
chr6 (97-173)||(5618573-5618649)
chr6 (93-173)||(7560436-7560516)
chr6 (93-190)||(9314046-9314139)
chr6 (476-532)||(11369591-11369647)
chr6 (88-173)||(2330407-2330492)
chr6 (476-532)||(10997779-10997834)
chr6 (476-532)||(15065966-15066021)
chr6 (276-359)||(7560607-7560690)
chr6 (97-173)||(28117617-28117693)
chr6 (115-173)||(22920307-22920365)
chr6 (260-359)||(2330896-2330995)
chr6 (97-142)||(3827081-3827126)
chr6 (121-173)||(22464192-22464244)
[»] scaffold0043 (1 HSPs)
scaffold0043 (93-432)||(13114-13449)
[»] scaffold0911 (1 HSPs)
scaffold0911 (93-423)||(4096-4420)
[»] scaffold0273 (1 HSPs)
scaffold0273 (122-429)||(19975-20278)
[»] chr3 (31 HSPs)
chr3 (93-423)||(4249917-4250243)
chr3 (97-427)||(28326970-28327297)
chr3 (97-427)||(28330295-28330622)
chr3 (97-355)||(3305449-3305703)
chr3 (93-312)||(27054514-27054728)
chr3 (93-295)||(19868642-19868840)
chr3 (93-173)||(9157766-9157846)
chr3 (93-173)||(9154593-9154673)
chr3 (93-173)||(18882991-18883071)
chr3 (93-173)||(20536838-20536917)
chr3 (312-464)||(18551168-18551319)
chr3 (93-171)||(42354672-42354750)
chr3 (92-173)||(44508586-44508667)
chr3 (223-295)||(25491863-25491936)
chr3 (476-532)||(43746295-43746351)
chr3 (273-359)||(20537003-20537089)
chr3 (183-235)||(11270780-11270832)
chr3 (93-161)||(18551458-18551526)
chr3 (476-532)||(21075900-21075955)
chr3 (476-532)||(27877565-27877620)
chr3 (476-532)||(46219137-46219192)
chr3 (476-532)||(46311897-46311952)
chr3 (284-359)||(46541946-46542019)
chr3 (97-164)||(10963194-10963261)
chr3 (97-164)||(10966703-10966770)
chr3 (491-537)||(1695022-1695067)
chr3 (115-173)||(23375010-23375068)
chr3 (115-173)||(29233868-29233926)
chr3 (491-537)||(31412161-31412206)
chr3 (507-541)||(43736052-43736086)
chr3 (97-169)||(10959682-10959754)
[»] scaffold0083 (2 HSPs)
scaffold0083 (93-429)||(52644-52976)
scaffold0083 (93-429)||(28847-29179)
[»] scaffold0401 (1 HSPs)
scaffold0401 (93-427)||(3786-4116)
[»] scaffold0637 (5 HSPs)
scaffold0637 (186-477)||(1739-2027)
scaffold0637 (296-477)||(659-838)
scaffold0637 (296-477)||(929-1108)
scaffold0637 (296-477)||(1469-1648)
scaffold0637 (296-474)||(1202-1378)
[»] scaffold0002 (1 HSPs)
scaffold0002 (264-369)||(468871-468978)
[»] scaffold0134 (1 HSPs)
scaffold0134 (88-173)||(7015-7100)
[»] scaffold0014 (1 HSPs)
scaffold0014 (93-174)||(227124-227205)
[»] scaffold0214 (3 HSPs)
scaffold0214 (93-173)||(13384-13464)
scaffold0214 (93-173)||(27400-27480)
scaffold0214 (93-173)||(19835-19913)
[»] scaffold0219 (1 HSPs)
scaffold0219 (476-532)||(16649-16704)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-144; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 93 - 477
Target Start/End: Complemental strand, 13331946 - 13331567
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| | |  |||||||| ||    | |||||||| |    
T  13331946 taagatcaatttatgtgattgaaagaagctagggttagtagtcatacgaacaatcataagaaaagcattaagcacaaataatta----tgaataaagact 13331851  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| |||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |||| ||||||||||||||     
T  13331850 aggttttcattgatgtcaaagagagttcttaacaaattacatgct-cgcagatcacaaagattcatctcatggcttaatcaatccaagagtttagctacg 13331752  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||    
T  13331751 cataactaaacaatcaaatacatataaataatagaacatacgtaaatcagaaccagctatgagttgggtgagatccaccgcgtgttcttcagcttcctgg 13331652  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgcacacctttaatctctggttgcttttgacttttatagacacaaaattaggg 477  Q
    || |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13331651 tgtcgtctatgctttgtttaggtctccaaaatcgcacacctttaatctctggttgcttctgacttttatagacacaaaattaggg 13331567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 93 - 477
Target Start/End: Complemental strand, 9466985 - 9466609
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |  |||||||| ||    | |||||||| |    
T  9466985 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcattaagcacaaataatta----tgaataaagact 9466890  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
     | ||||||||||| ||||||| |||||||||||||||||||| | || |||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  9466889 ggtttttcattgatgtcaaagagagttcttaacaaattacatgct-caaagatcacaaagattcatctcatggcttaatcaatttaagagtttagctact 9466791  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||  | ||||||||||||||| ||     
T  9466790 cataactaaacaatcaaatacatagaa-taatataacatacataaatcagaagcaactatgagttgggtgagatccactgtgtgttcttcagcttcctgt 9466692  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgcacacctttaatctctggttgcttttgacttttatagacacaaaattaggg 477  Q
    ||||||||||||||||||||||||||||||||||  ||||  ||||||||||| | || ||||||||||||||||||||||||||    
T  9466691 tgccgtctatgctctgtttaggtctccaaaatcg--cacccataatctctggtcgtttctgacttttatagacacaaaattaggg 9466609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 93 - 477
Target Start/End: Original strand, 39660218 - 39660599
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |  ||    |||||||||| |||||||| |    
T  39660218 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcattaagcac----aaataattctgaataaagact 39660313  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| ||||||||||||||||||| | ||| |||||| ||||||||||||| || |||||| ||||||||||||||||||||    
T  39660314 aggttttcattgatgtcaaagagagttcttaacaaattacat-gctcatagatcataaagattcatctcgtgacttaatcaatctaagagtttagctact 39660412  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatac----ataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttc 388  Q
    ||||||||||||||||||||||||||||||||| |||||||    ||||||||||||  |||||||||||||||||||||| |||| |||||||||||||    
T  39660413 cataactaaacaatcaaatacatagaaataatagaacatacatatataaatcagaacgtactatgagttgggtgagatccaccgcgcgttcttcagcttc 39660512  T
Q  389 ttggtgccgtctatgctctgtttaggtctccaaaatcgcacacctttaatctctggttgcttttgacttttatagacacaaaattaggg 477  Q
     || |||||||| |||||||||||||||||||||||||||||||  ||||||||| | |||| || |||| || |||||||||||||||    
T  39660513 ctgatgccgtctttgctctgtttaggtctccaaaatcgcacacc--taatctctgatcgcttctggctttaattgacacaaaattaggg 39660599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 93 - 427
Target Start/End: Complemental strand, 5827884 - 5827554
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||| ||||||||||||||||||||| |||||||| ||||||  |||||||||||||||||||||||||| ||||||||    |||| |||||||| |    
T  5827884 taagattaatttatgtgattgaaagaagctagggttaatagtcaagcaaacaatcataagaaaagcaatgaacacaaataa----ttctgaataaagact 5827789  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||| ||||| | ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  5827788 aggttttctttgatgtaaaagagaattcttaacaaactacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagccact 5827689  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    ||||||||||||||||||||||||||||  |   |||||||||||| || ||||||||||||||| |||||||||||  ||||||||||| ||||| | |    
T  5827688 cataactaaacaatcaaatacatagaaaatagtgaacatacataaaccaaaaccaactatgagtttggtgagatccaatgcgtgttcttcggcttcctag 5827589  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgc 427  Q
    || |||||||||||| ||||||||| |||||||||    
T  5827588 tgtcgtctatgctctatttaggtcttcaaaatcgc 5827554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 30645331 - 30645251
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||  |||||||||||| ||||||||    
T  30645331 taagatcaatttatgtgattgtaagaagttagggttaatagtcatgcaaacaatcatatcaaaagcaatgaacacaaataa 30645251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 478 - 541
Target Start/End: Complemental strand, 45451835 - 45451772
Alignment:
Q  478 gccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaaacccgtaac 541  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||    
T  45451835 gccgaataattgcagctcgaattttgaagaggactttttagcccggctcgtaaaaacccgtaac 45451772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 31984847 - 31984766
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaa 174  Q
    ||||||||||||||||||||| |||||| || ||||| ||||||| ||| |||||||| ||||||||||||| |||||||||    
T  31984847 taagatcaatttatgtgattgtaagaagctatggttaatagtcatgcaaccaatcatatgaaaagcaatgaatacaaataaa 31984766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 30436532 - 30436476
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  30436532 gggccgaataattggagcccgaaatttgaagagggctttttagcccggcccgtaaaa 30436476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 35813501 - 35813445
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  35813501 gggccgaataattggagcccgaaatttgaagagggctttttagcccggcccgtaaaa 35813445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 3940709 - 3940764
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  3940709 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 3940764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 31981202 - 31981126
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||| |||||| || ||||| |||||||  ||||||||||| ||||| ||||||| ||||||||    
T  31981202 atcaatttatgtgattgtaagaagctatggttaatagtcattgaaacaatcatatgaaaatcaatgaacacaaataa 31981126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 27863815 - 27863892
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatac-aaacaatcataagaaaagcaatgaaaacaa 169  Q
    ||||||||||| |||| |||| |||||| |||||||| ||||||||| |||||||||||  |||||||||||| ||||    
T  27863815 taagatcaattcatgtaattgcaagaagctagggttaatagtcatacaaaacaatcatataaaaagcaatgaacacaa 27863892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 3654372 - 3654317
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||    
T  3654372 gggccgaataattggagcccgaaatt-gaagagggctttttagctcggcccgtaaaa 3654317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 477 - 541
Target Start/End: Original strand, 6142935 - 6142998
Alignment:
Q  477 ggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaaacccgtaac 541  Q
    |||||||||||||||||||| ||| |    |||||||||||||||||||||||||||||||||||    
T  6142935 ggccgaataattgcagcccggattcttcc-agggctttttagcccggcccgtaaaaacccgtaac 6142998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 14627231 - 14627143
Alignment:
Q  170 ataaataattctcaataaagattaggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaa-agattcat 258  Q
    |||||||||| | ||||| || ||||||| || |||||||||||  |||||  ||||||||||||||||||||||| |||| ||||||||    
T  14627231 ataaataattatgaataatgactaggtttccaatgatatcaaagggagttca-aacaaattacatggttcacagattacaatagattcat 14627143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 14187855 - 14187782
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaa-caatcataagaaaagcaatgaaaacaa 169  Q
    ||||||| |||| |||| ||||||||||||||  |||||||||||| |||| |||  |||||||||||| ||||    
T  14187855 atcaattcatgtaattgcaagaagttagggtttatagtcatacaaagcaattatataaaaagcaatgaacacaa 14187782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 22654116 - 22654043
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaa-caatcataagaaaagcaatgaaaacaa 169  Q
    ||||||| |||| |||| |||||| |||||||| |||||||||||| |||| |||  |||||||||||| ||||    
T  22654116 atcaattcatgtaattgcaagaagctagggttaatagtcatacaaagcaataatataaaaagcaatgaacacaa 22654043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 476 - 539
Target Start/End: Original strand, 2349732 - 2349793
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaaacccgta 539  Q
    |||||||||||||||||| ||||||||    ||||||||||||||||||||  |||| ||||||    
T  2349732 gggccgaataattgcagctcgaatttt--tcagggctttttagcccggcccaaaaaagcccgta 2349793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 20262409 - 20262338
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaa 169  Q
    ||||||| |||| |||  ||||||||||||||| ||||||||||| |||| ||| | ||||||||||| ||||    
T  20262409 atcaattcatgtaatttcaagaagttagggttaatagtcatacaagcaattatatg-aaagcaatgaacacaa 20262338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 21049039 - 21048968
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaa 169  Q
    ||||||| |||| |||  ||||||||||||||| ||||||||||| |||| ||| | ||||||||||| ||||    
T  21049039 atcaattcatgtaatttcaagaagttagggttaatagtcatacaagcaattatatg-aaagcaatgaacacaa 21048968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 93 - 477
Target Start/End: Complemental strand, 15851030 - 15850651
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |  ||||||||    || | |||||||| |    
T  15851030 taagataaatttatgtgattgaaagaagttagggttattagtcatacaaacaatcataagaaaagcattaagcacaaataa----ttttgaataaagact 15850935  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15850934 aggttttcattgatgtcaaagagagttcttaacaaattacatg-ttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctact 15850836  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
     |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||| |||    
T  15850835 tataactaaacaatcaaatacatagaaataatagaacatacatatatcagaaccaactatgagttgggtgagatccactgcgtgttcttcagcttcctgg 15850736  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgcacacctttaatctctggttgcttttgacttttatagacacaaaattaggg 477  Q
    ||  ||||||||||| || |||||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||||    
T  15850735 tgttgtctatgctctattgaggtctccaaaatcacacccccttaatctctggttgcttctgacttttatagacacaaaattaggg 15850651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 93 - 429
Target Start/End: Original strand, 56089575 - 56089907
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||||| ||||||||    |||| |||||||| |    
T  56089575 taagatcaatttatgtgattgaaagaagctagggttaatagtcatgcaaacaatcatacgaaaagcaatgaacacaaataa----ttctgaataaagact 56089670  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  56089671 aggttttcattgatgtcaaagagagttcttaacaaattacatgattcacagatcacaaagattcatttcatggcttaatcaatctaagagtttagctact 56089770  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    ||||||||||||||||||||||||||||  |   |||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |||    
T  56089771 cataactaaacaatcaaatacatagaaaatagcgaacatacataaaccagaaccaactatgagtttggtgagatccaccgcgtgttcttcagcttcctgg 56089870  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgcac 429  Q
    |||||||||||||||||||||||||| ||||||||||    
T  56089871 tgccgtctatgctctgtttaggtctctaaaatcgcac 56089907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 93 - 427
Target Start/End: Complemental strand, 13978991 - 13978662
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| | |  ||    |||||||||| |||||||| |    
T  13978991 taagatcaatttatgtgattgaaagaagctagggttagtagtcatacaaacaatcagaagaaaagcattaagcac----aaataattctgaataaagact 13978896  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  13978895 aggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggtttaatcaatctaagagtttagctact 13978796  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    ||||||||||||||| ||||||||||||  |   |||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||| |||    
T  13978795 cataactaaacaatc-aatacatagaaaatagcgaacatacataaaccagaaccaactatgagttgggtgagatccaccgtgtgttcttcagcttcctgg 13978697  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgc 427  Q
    ||||||||||||||| |||||||||||||||||||    
T  13978696 tgccgtctatgctctatttaggtctccaaaatcgc 13978662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 93 - 427
Target Start/End: Complemental strand, 19928761 - 19928432
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| | |  ||    |||||||||| |||||||| |    
T  19928761 taagatcaatttatgtgattgaaagaagctagggttagtagtcatacaaacaatcagaagaaaagcattaagcac----aaataattctgaataaagact 19928666  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||    
T  19928665 aggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcattacttaatcaatctaagagtttagctact 19928566  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    ||||||||||||||| ||||||||||||  |   |||||||||||| ||||||||||||||||||| |||||||||| || ||||||||||||||| |||    
T  19928565 cataactaaacaatc-aatacatagaaaatagcgaacatacataaaccagaaccaactatgagttgtgtgagatccaccgtgtgttcttcagcttcctgg 19928467  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgc 427  Q
    ||||||||||||||||||| |||||||||||||||    
T  19928466 tgccgtctatgctctgttttggtctccaaaatcgc 19928432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 93 - 431
Target Start/End: Original strand, 26703752 - 26704085
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| | |  ||    |||||||||| |||||||| |    
T  26703752 taagatcaatttatatgattgaaagaagctagagttagtagtcatacaaacaatcataagaaaagcattaagcac----aaataattctgaataaagact 26703847  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| | ||||| ||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26703848 aggttttcattgatgttaaagagagttcttaacaaattaca-ccatcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctact 26703946  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    |||||| |||||||||||||||||||||  |   ||||||||||||| |||||||||||||||||||||||||||||  ||||||||| | | ||| |||    
T  26703947 cataaccaaacaatcaaatacatagaaaatagtgaacatacataaattagaaccaactatgagttgggtgagatccactgcgtgttctgcggtttcctgg 26704046  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgcacac 431  Q
    || ||||||||||||||||||||||| ||||| ||||||    
T  26704047 tgtcgtctatgctctgtttaggtctctaaaattgcacac 26704085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 11702848 - 11702926
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaat 171  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||||| ||||||||||||| ||||||    
T  11702848 taagatcaatttatgtgattgcaagaagctagggttaatagtcatgcaaacaatcatatgaaaagcaatgaacacaaat 11702926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 10385808 - 10385728
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||| ||| |||||||| ||||||||||||| ||||||||    
T  10385808 taagatcaatttatgtgattgcaagaagctagggttaatagtcatgcaagcaatcatatgaaaagcaatgaacacaaataa 10385728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 95 - 359
Target Start/End: Complemental strand, 23653136 - 23652884
Alignment:
Q  95 agatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagattag 194  Q
    ||||||||| |  |||||||||||||||||| ||| ||||||| ||||||||||||| |||||||||||| ||    |||||||||| |||||||||| |    
T  23653136 agatcaattaacatgattgaaagaagttaggtttaatagtcatgcaaacaatcataataaaagcaatgaacac----aaataattctgaataaagatt-g 23653042  T
Q  195 gttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaa-agattcatctcatggcttaattaatctaagagtttagctactc 293  Q
      |  ||||||||  ||||| |||||      || ||| ||||||||| || |||| || ||||  |||||||| ||| || |||||||||||| |||||    
T  23653041 aataacattgataataaagagagttc------aactacttggttcacatattacaataggttca--tcatggctcaatcaaactaagagtttagatactc 23652950  T
Q  294 ataactaaacaatcaaatacatagaaata-atataacatacataaatcagaaccaactatgagttgg 359  Q
    ||||||||||||||| |  |||| || || | | |||||||||||||| | ||||||||||||||||    
T  23652949 ataactaaacaatcataagcata-aactagagaaaacatacataaatccggaccaactatgagttgg 23652884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 476 - 541
Target Start/End: Complemental strand, 7138538 - 7138473
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaaacccgtaac 541  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| |||||||    
T  7138538 gggccgaataattgcagcccaaattttgaagagggctttttagccctgctcgtaaaaatccgtaac 7138473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 17543787 - 17543843
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  17543787 gggccgaataattggagcccgaaatttgaagagggctttttagcccggcccgtaaaa 17543843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 33400593 - 33400661
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaat 161  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||  |||||||||||| ||||||||||    
T  33400593 taagatcaatttatgtgattgcaagaagctagggttaatagtcaagcaaacaatcatatgaaaagcaat 33400661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 39345871 - 39345927
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  39345871 gggccgaataattggagcccgaaatttgaatagggctttttagcccggcccgtaaaa 39345927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 11560650 - 11560591
Alignment:
Q  114 aaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    |||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||||    
T  11560650 aaagaagttagggttaatagtcatgcaaacaatcataataaaagcaatgaacacaaataa 11560591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 10247678 - 10247625
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaat 146  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||    
T  10247678 taagatcaatttatgtgattgtaagaagttagggttaatagtcatgcaaacaat 10247625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 2323863 - 2323808
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  2323863 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 2323808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 20034365 - 20034310
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  20034365 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 20034310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 532
Target Start/End: Original strand, 47295607 - 47295659
Alignment:
Q  479 ccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    ||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  47295607 ccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 47295659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 951413 - 951468
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    ||||||||||| || |||||||| || ||||||||||||||||||||||||||||||    
T  951413 gggccgaataagtggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 951468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 27870062 - 27870117
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    ||||| |||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  27870062 gggccaaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 27870117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 45522540 - 45522595
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || |||||| |||||||||||||||||||||||    
T  45522540 gggccgaataattggagcccgaaatt-gaagagagctttttagcccggcccgtaaaa 45522595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 54134559 - 54134504
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| ||||| || || ||||||||||||||||||||||||||||||    
T  54134559 gggccgaataattggagcccaaaatt-gaagagggctttttagcccggcccgtaaaa 54134504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 541
Target Start/End: Original strand, 44341263 - 44341297
Alignment:
Q  507 agggctttttagcccggcccgtaaaaacccgtaac 541  Q
    |||||||||||||||||||||||||| ||||||||    
T  44341263 agggctttttagcccggcccgtaaaagcccgtaac 44341297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 327 - 359
Target Start/End: Complemental strand, 14701543 - 14701511
Alignment:
Q  327 aacatacataaatcagaaccaactatgagttgg 359  Q
    |||||||||||||| ||||||||||||||||||    
T  14701543 aacatacataaatccgaaccaactatgagttgg 14701511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 245; Significance: 1e-135; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 93 - 477
Target Start/End: Original strand, 38316308 - 38316688
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || | |  ||||||||    |||| |||||||| |    
T  38316308 taagatcaatttatgtgattgaaagaagctacggttagtagtcatacaaacaatcataagaaaaacattaagcacaaataa----ttctgaataaagact 38316403  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaa-tctaagagtttagctac 291  Q
    |||||||||||||| ||||||| |||||||||||| ||||||| | |||| |||||||||||||||||||||||||||| || ||||| |||||||||||    
T  38316404 aggttttcattgatgtcaaagagagttcttaacaatttacatgct-cacatatcacaaagattcatctcatggcttaatcaaatctaatagtttagctac 38316502  T
Q  292 tcataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttg 391  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||  || |||||||||||||| ||    
T  38316503 tcataactaaacaatcaaatacatagaaataatagaacatacataaatcagaaccaacaatgagttgggtgagatgcactgcatgttcttcagcttcctg 38316602  T
Q  392 gtgccgtctatgctctgtttaggtctccaaaatcgcacacctttaatctctggttgcttttgacttttatagacacaaaattaggg 477  Q
    |||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38316603 gtgttgtctatgctcagtttaggtctccaaaatcgcacacctttaatctctggttgcttctgacttttatagacacaaaattaggg 38316688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 97 - 427
Target Start/End: Original strand, 40678037 - 40678364
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagattaggt 196  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |  ||    |||||||||| |||||||| |||||    
T  40678037 atcaatttatgtgattgaaagaagctagggttagtagtcatacaaacaatcataagaaaagcattaagcac----aaataattctgaataaagactaggt 40678132  T
Q  197 tttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctactcata 296  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  40678133 tttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagttcagctactcata 40678232  T
Q  297 actaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttc-ttcagcttcttggtgc 395  Q
    ||||||||||||||||||||||||  |   |||||||||||| |||||||||||||||||| |||||||||||  |||||||| || |||||| |||||     
T  40678233 actaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactatgagtttggtgagatccaatgcgtgttcttttagcttcctggtgt 40678332  T
Q  396 cgtctatgctctgtttaggtctccaaaatcgc 427  Q
    | ||||||||||||||  ||||||||||||||    
T  40678333 cttctatgctctgtttttgtctccaaaatcgc 40678364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 285 - 429
Target Start/End: Original strand, 9748056 - 9748200
Alignment:
Q  285 tagctactcataactaaacaatcaaatacatagaaa-taatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttca 383  Q
    |||||||||||||||||||||||||||||||||||| ||||  |||||||||||| ||||| |||||| ||||| ||||||||||| |||||||||||||    
T  9748056 tagctactcataactaaacaatcaaatacatagaaaataatg-aacatacataaaccagaatcaactaggagtttggtgagatccaacgcgtgttcttca 9748154  T
Q  384 gcttcttggtgccgtctatgctctgtttaggtctccaaaatcgcac 429  Q
     |||| ||||| ||||||||||||||||||||||||||||||||||    
T  9748155 acttcctggtgtcgtctatgctctgtttaggtctccaaaatcgcac 9748200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 312 - 429
Target Start/End: Original strand, 30994202 - 30994319
Alignment:
Q  312 acatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttggtgccgtctatgctctgttt 411  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||| ||||||  ||||    
T  30994202 acatagaaataatagaacatacataaatcagaaccaactatgagttgggtgagatccaccgcgtgttctttagcttcctggtgccgtttatgctaagttt 30994301  T
Q  412 aggtctccaaaatcgcac 429  Q
    ||||||||||||||||||    
T  30994302 aggtctccaaaatcgcac 30994319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 476 - 534
Target Start/End: Complemental strand, 26556557 - 26556499
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaaac 534  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26556557 gggccgaataattgcagctcgaattttgaagagggctttttagcccggcccgtaaaaac 26556499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 1503694 - 1503774
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||| ||| |||||||| ||||||||||||| ||||||||    
T  1503694 taagatcaatttatgtgattgcaagaagctagggttaatagtcatgcaagcaatcatatgaaaagcaatgaacacaaataa 1503774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 4577710 - 4577630
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||| |||||||| ||| ||||||||||||| ||||||||    
T  4577710 taagatcaatttatgtgattgtaagaagatagggttaatagtcatgcaaacaattatatgaaaagcaatgaacacaaataa 4577630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 1506898 - 1506978
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||| ||| |||||||| ||||| ||||||| ||||||||    
T  1506898 taagatcaatttatgtgattgcaagaagctagggttaatagtcatgcaagcaatcatatgaaaaacaatgaacacaaataa 1506978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 38326227 - 38326147
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||| ||||||||||||  ||||| |||||| ||||||||    
T  38326227 taagatcaatttatgtgattgcaagaagctagggttaatagtcatgcaaacaatcatatcaaaagtaatgaacacaaataa 38326147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 38326532 - 38326612
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||| ||||||||||||  ||||| |||||| ||||||||    
T  38326532 taagatcaatttatgtgattgcaagaagctagggttaatagtcatgcaaacaatcatatcaaaagtaatgaacacaaataa 38326612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 15560640 - 15560585
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  15560640 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 15560585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 21747456 - 21747511
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  21747456 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 21747511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 25096343 - 25096398
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  25096343 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 25096398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 29201480 - 29201425
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  29201480 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 29201425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 30719632 - 30719563
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaa 164  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| |||  |||||||  ||||||||||||    
T  30719632 taagatcaatttatgtgattgcaagaagttagggttaatagtcatgcaa--aatcatataaaaagcaatgaa 30719563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 478 - 532
Target Start/End: Complemental strand, 40861107 - 40861054
Alignment:
Q  478 gccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||| |||||||| || |||||||||||||||||| |||||||||||    
T  40861107 gccgaataattggagcccgaaatt-gaagagggctttttagcctggcccgtaaaa 40861054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 476 - 541
Target Start/End: Complemental strand, 4471040 - 4470975
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaaacccgtaac 541  Q
    ||||| |||||| ||||||| |||||||||||||| |||||||| |||||  |||||||| |||||    
T  4471040 gggccaaataatggcagcccaaattttgaagagggttttttagcgcggcctttaaaaacctgtaac 4470975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 24385577 - 24385685
Alignment:
Q  251 agattcatctcatggcttaattaatctaagagtttagctactcataactaa-acaatcaaatacatagaaataatataacatacataaatcagaaccaac 349  Q
    ||||||||||||||||||||| || | ||  | ||| || ||||||||||| |||||||   ||| || ||||||   ||||||||||||||||||||||    
T  24385577 agattcatctcatggcttaatcaa-caaatggcttaacttctcataactaagacaatcactaacaaaggaataatgatacatacataaatcagaaccaac 24385675  T
Q  350 tatgagttgg 359  Q
    ||||||||||    
T  24385676 tatgagttgg 24385685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 40000860 - 40000806
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    ||||||||||||||  ||||||| || ||||||||||||||||||||||||||||||    
T  40000860 gggccgaataattgg-gcccgaaatt-gaagagggctttttagcccggcccgtaaaa 40000806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 88 - 477
Target Start/End: Complemental strand, 38431255 - 38430874
Alignment:
Q  88 atttttaagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataa 187  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |  ||    |||||||||| |||||    
T  38431255 atttctaagatcaatttatgtgattgaaagaagctagggttagtagtcatacaaacaatcataagaaaagcagtaagcac----aaataattctgaataa 38431160  T
Q  188 agattaggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttag 287  Q
    ||| ||||||| ||||||| ||||||| ||||||||||||||||||| | ||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  38431159 agactaggtttacattgatgtcaaagagagttcttaacaaattacat-gctcacaaatcacaaagattcatctcatggcttaatcaatctaagagtttag 38431061  T
Q  288 ctactcataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagctt 387  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||    
T  38431060 ctactcataactaaacaatcaaatacatagaaataatagaacatacataaatcaaaaccaactatgagttgggtgagatccactgcgtgttcttcagctt 38430961  T
Q  388 cttggtgccgtctatgctctgtttaggtctccaaaatcgcacacctttaatctctggttgcttttgacttttatagacacaaaattaggg 477  Q
    | |||||  ||||||||| ||||||||||||||||||||||| |   ||||||||||| |||| || |||| ||||||||||||||||||    
T  38430960 cctggtgttgtctatgctatgtttaggtctccaaaatcgcaccc---taatctctggtcgcttctggctttaatagacacaaaattaggg 38430874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 93 - 477
Target Start/End: Complemental strand, 43549050 - 43548673
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |  ||||||||    || | |||||||| |    
T  43549050 taagttcaatttatgtgattgaaagaagctagggttagtagtcatacaaacaatcataagaaaagcattaagcacaaataa----ttttgaataaagact 43548955  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| |||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  43548954 aggttttcattgatgtcaaagagagttcttatcaaattacatgct-cacagatcacaaagattcatctcatggcttaatcaatataagagtttagctact 43548856  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    |||||||||||||| ||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43548855 cataactaaacaatgaaatacacagaaataatagaacatgcataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcctgg 43548756  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgcacacctttaatctctggttgcttttgacttttatagacacaaaattaggg 477  Q
    ||||||||||||| ||||||||||||||||||||  |||| | ||  |||| | || ||||||||||||||||| | ||||||||    
T  43548755 tgccgtctatgctatgtttaggtctccaaaatcg--caccctaaacttctgatcgcatttgacttttatagacaaagaattaggg 43548673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 93 - 428
Target Start/End: Original strand, 12803525 - 12803855
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | |  ||    |||||||||| |||||||| |    
T  12803525 taagatcaatttatgtgattgaaagaagctagggttagtagtcatataaacaatcataagaaaagcattaagcac----aaataattctgaataaagact 12803620  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||| ||||||| ||||||| ||||||||||||||||||| | ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12803621 aggtttacattgatgtcaaagagagttcttaacaaattacat-gctcacaaatcacaaagattcatctcatggcttaatcaatctaagagtttagctact 12803719  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||  |||    
T  12803720 cataactaaacaatcaaatacatagaaataatagaacatacataaatcagaaccaactatgagttgggtgagatccactgcatgttcttcagctttctgg 12803819  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgca 428  Q
    ||| ||||||||||||||||||||||||||||||||    
T  12803820 tgctgtctatgctctgtttaggtctccaaaatcgca 12803855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 93 - 431
Target Start/End: Complemental strand, 6964144 - 6963811
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || | |  || |||||    |||| |||||||| |    
T  6964144 taagatcaatttatgtgattgaaagaaggtagggttagtagtcatacaaacaatcataagaaaaacattaagcaccaataa----ttctgaataaagact 6964049  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6964048 aggttttcattgatgtcaaagagagttcttaacaaattacatgct-cacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctact 6963950  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||  ||||| |||||| |||| |||    
T  6963949 cataactaaacaatcgaatacatagaaataatagaacatacataaatcagaaccaactatgagttggctgagatccactgcgtgctcttcaacttcctgg 6963850  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgcacac 431  Q
    ||  |||||||||||||||||||||||||||||||||||    
T  6963849 tgttgtctatgctctgtttaggtctccaaaatcgcacac 6963811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 97 - 427
Target Start/End: Original strand, 44018057 - 44018383
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagattaggt 196  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |  ||    |||||||||| ||||||||||||||    
T  44018057 atcaatttatgtgattgaaagaagctagggttagtagtcatacaaacaatcataagaaaagcattaagcac----aaataattctgaataaagattaggt 44018152  T
Q  197 tttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctactcata 296  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  44018153 tttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagttcagctactcata 44018252  T
Q  297 actaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttggtgcc 396  Q
    ||||||||||||||||||||||||  |   |||||||||||| |||||||||||||||||| |||||||||||  |||||||||| |||||| ||||| |    
T  44018253 actaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactatgagtttggtgagatccaatgcgtgttctttagcttcctggtgtc 44018352  T
Q  397 gtctatgctctgtttaggtctccaaaatcgc 427  Q
     ||||||||||||||  ||||||||||||||    
T  44018353 ttctatgctctgtttttgtctccaaaatcgc 44018383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 93 - 424
Target Start/End: Complemental strand, 26153008 - 26152682
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||  | |  |||||||| ||    | |||||||| |    
T  26153008 taagatcaatttatgtgattgaaagaagttagggttagtagtcataaaaagaatcataaaaaaagcgttaagcacaaataatta----tgaataaagact 26152913  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26152912 aggttttcattgatgtcaaagagagttcttaacaaattacatgctt-acagatcacaaagattcatctcatggcttaatcaatctaagagtttagctact 26152814  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    |||||||||||||| ||||||||| |||||||| |||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||| |||    
T  26152813 cataactaaacaattaaatacataaaaataatagaacatacataaatcaataccaactatgagttgggtgagatccaccgcgtgttcttcagcttcctgg 26152714  T
Q  393 tgccgtctatgctctgtttaggtctccaaaat 424  Q
    || |||||||||| ||||||||||||| ||||    
T  26152713 tgtcgtctatgctttgtttaggtctccgaaat 26152682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 93 - 429
Target Start/End: Original strand, 3541429 - 3541759
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||||| ||||||||    |||| ||| |||| |    
T  3541429 taagatcaatttatgtgattgaaagaagctagggttaatagtcattcaaacaatcatacgaaaagcaatgaacacaaataa----ttctgaatgaagact 3541524  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| | ||||| |||||||  |||||||||||||  ||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  3541525 aggttttcattgatgttaaagagagttctt--caaattacatggtcaacagatcacaaagattcatctcatgacttaatcaatctaagagtttagctact 3541622  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    ||||||||||||||||||||||||||||  |   |||||||||||| ||||||||||||| |||| | ||||||||| |||||||||||||||||| |||    
T  3541623 cataactaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactataagtttgctgagatccaccgcgtgttcttcagcttcctgg 3541722  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgcac 429  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  3541723 tgccgtctatgctctatttaggtctccgaaatcgcac 3541759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 254 - 384
Target Start/End: Original strand, 28578315 - 28578447
Alignment:
Q  254 ttcatctcatggcttaattaatctaagagtttagctactcataactaa-acaatcaaatacatagaaataatataacatacataaatcagaaccaactat 352  Q
    |||||||||||||| ||| ||||||| ||||||||||||||||||||| ||||| ||  ||||| || |||   ||||||||||||||||||||||| ||    
T  28578315 ttcatctcatggctcaatcaatctaaaagtttagctactcataactaagacaattaacaacataaaattaaatgaacatacataaatcagaaccaacaat 28578414  T
Q  353 gagttgg-gtgagatccatcgcgtgttcttcag 384  Q
    ||||||| ||||||||||  || ||||||||||    
T  28578415 gagttggtgtgagatccactgcatgttcttcag 28578447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 22083703 - 22083796
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaaga 190  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||  |||||||||||| |    ||||||||||| ||||||||    
T  22083703 taagatcaatttatgtgattgcaagaagttagggttaatagtcatgcaaacaatcatataaaaagcaatgaaca----taaataattctgaataaaga 22083796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 10993225 - 10993281
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||    
T  10993225 gggccgaataattggagctcgaaatttgaagagggctttttagcccggcccgtaaaa 10993281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 1873675 - 1873730
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  1873675 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 1873730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 23025201 - 23025256
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  23025201 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 23025256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 39494114 - 39494058
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||||    
T  39494114 gggccgaataattggagcccgaaatttgaatagggctttttagcccggcctgtaaaa 39494058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 295
Target Start/End: Complemental strand, 17601473 - 17601351
Alignment:
Q  170 ataaataattctcaataaagattaggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaa-agattcatctcatggctt 268  Q
    |||||||||||| |||||||| |||||||   ||||||||||| | |||||  ||||| |||||| ||||||| || |||| |||||||||||||||||     
T  17601473 ataaataattctaaataaagactaggttt---ttgatatcaaaaagagttc-aaacaagttacattgttcacatattacaatagattcatctcatggctc 17601378  T
Q  269 aattaatctaagagtttagctactcat 295  Q
    ||| |||| || |  ||||||||||||    
T  17601377 aatcaatcaaacaaattagctactcat 17601351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 23467393 - 23467437
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcat 137  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||    
T  23467393 taagatcaatttatgtgattgtaagaagttagggttaatagtcat 23467437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 478 - 532
Target Start/End: Original strand, 16526229 - 16526282
Alignment:
Q  478 gccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||| |||||||| || |||||||||||||||| |||||||||||||    
T  16526229 gccgaataattggagcccgaaatt-gaagagggctttttagtccggcccgtaaaa 16526282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 26182138 - 26182080
Alignment:
Q  115 aagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    |||||| |||||||| ||||||||||| |||| ||| ||||||||||||| ||||||||    
T  26182138 aagaagctagggttaatagtcatacaagcaattatatgaaaagcaatgaacacaaataa 26182080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 28578198 - 28578309
Alignment:
Q  115 aagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagattaggttttcattgatatcaaaga 214  Q
    |||||||||||| |||||||||||||  |||| ||| |||||||| | || ||||| ||    || | |||||| ||||| |||||| ||||||||||||    
T  28578198 aagaagttagggctagtagtcataca--caattatatgaaaagcattaaatacaaacaa----ttttgaataaaaattagattttcactgatatcaaaga 28578291  T
Q  215 aagttcttaacaaattac 232  Q
     ||| |||||||||||||    
T  28578292 gagtacttaacaaattac 28578309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 22232892 - 22232965
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatac-aaacaatcataagaaaagcaatgaaaacaa 169  Q
    ||||||| |||| |||| |||||| |||||||| ||||||||| ||||||| |||  |||||||||||| ||||    
T  22232892 atcaattcatgtaattgcaagaagctagggttaatagtcatacaaaacaattatataaaaagcaatgaacacaa 22232965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 22253847 - 22253774
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatac-aaacaatcataagaaaagcaatgaaaacaa 169  Q
    ||||||| |||| |||| |||||| |||||||| ||||||||| ||||||| |||  |||||||||||| ||||    
T  22253847 atcaattcatgtaattgcaagaagctagggttaatagtcatacaaaacaattatataaaaagcaatgaacacaa 22253774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 22257111 - 22257038
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaa-caatcataagaaaagcaatgaaaacaa 169  Q
    ||||||| |||| |||| |||||| |||||||| |||||||||||| |||| |||  |||||||||||| ||||    
T  22257111 atcaattcatgtaattgcaagaagctagggttaatagtcatacaaagcaattatataaaaagcaatgaacacaa 22257038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 93 - 477
Target Start/End: Original strand, 2500269 - 2500646
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |  |||||||     |||| ||||||||||    
T  2500269 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcattaagcacaaatat----ttctgaataaagatt 2500364  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| ||||||||||||| |||||| | ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  2500365 aggttttcattgatgtcaaagagagttcttaacaaactacatgct-cacagatcacaaaaattcatctcatggcttaatcaatctaagagtttagctact 2500463  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||| |||    
T  2500464 cataactaaacaatcaaatacatagaaataatagaacatacataaatcacaaccaactatgagttgggtgagatccactgcgtgttcttcagcttcctgg 2500563  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgcacacctttaatc-tctggttgcttttgacttttatagacacaaaattaggg 477  Q
    || |||||||||||||||||||||||||||||||||| ||   || | |||||| |||| |  |||||||||||||||||||||||    
T  2500564 tgtcgtctatgctctgtttaggtctccaaaatcgcacccc---aagcttctggtcgcttctcgcttttatagacacaaaattaggg 2500646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 93 - 429
Target Start/End: Original strand, 33321185 - 33321516
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |  ||||||||    || | |||||| | |    
T  33321185 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcattaagcacaaataa----ttttgaataaatact 33321280  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
     ||||||||||||| ||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  33321281 cggttttcattgatgtcaaagagagttcttaacaaattacatgct-cacagatcacaaagattcatctcatgacttaatcaatctaagagtttagctact 33321379  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  33321380 cataactaaacaattaaatacatagaaataatagaacatacataaatcagaaccaactatgagttgggtgagatccaccgcgtgttcttcagcttcctgg 33321479  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgcac 429  Q
    ||| ||||||||| |||||||||||||||||||||||    
T  33321480 tgctgtctatgctatgtttaggtctccaaaatcgcac 33321516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 93 - 424
Target Start/End: Complemental strand, 33920999 - 33920672
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||||| ||||||||    |||| |||||||| |    
T  33920999 taagatcaatttatgtgattgaaagaagctagggttaatagtcatgcaaacaatcatacgaaaagcaatgaacacaaataa----ttctgaataaagact 33920904  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||    
T  33920903 aggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatgacttaatcgatctaagagtttagctact 33920804  T
Q  293 cataactaaacaatcaaatacatag-aaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttg 391  Q
     |||||||||||||||||||||||| |||||||  |||||||||||| |||||||||||||||||| ||||||||||| | |||||||||||||||| ||    
T  33920803 aataactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggtgagatccaccacgtgttcttcagcttcctg 33920705  T
Q  392 gtgccgtctatgctctgtttaggtctccaaaat 424  Q
    ||| |||||||||||||||||||||||||||||    
T  33920704 gtgacgtctatgctctgtttaggtctccaaaat 33920672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 93 - 425
Target Start/End: Complemental strand, 26337840 - 26337512
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||||||  |||||||| ||||||| || ||||||||| |||||||||| || ||||||||    |||| |||||||| |    
T  26337840 taagatcaatttatgtgattgaaagaaactagggttaatagtcattcatacaatcatacgaaaagcaataaacacaaataa----ttctgaataaagact 26337745  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||||||| || |||||||||||||| ||||||||||||||||||||    
T  26337744 aggttttcattgatgtcaaagagagttcttaacaaattacatggttgacaaatcacaaagactcgtctcatggcttaatcaatctaagagtttagctact 26337645  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    ||||||||||||||||||||||||||||  |   |||||||||||| |||||||||||||||||| ||||||||| |  ||||||| ||| ||||| |||    
T  26337644 cataactaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactatgagtttggtgagatcgaatgcgtgttattcggcttcctgg 26337545  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatc 425  Q
    || |||||||||||| |||||||||||||||||    
T  26337544 tgtcgtctatgctctatttaggtctccaaaatc 26337512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 93 - 431
Target Start/End: Complemental strand, 9690620 - 9690286
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||| || ||||||||||||| |||||||| ||    | |||||||| |    
T  9690620 taagatcaatttatgtgattgaaataagctagggttaatagtcatgcaaacaatcgtacgaaaagcaatgaacacaaataatta----tgaataaagact 9690525  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| ||||| |||||||||| |||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  9690524 aggttttcattgatgtcaaagagagttcgtaacaaattatatggttcacaaatcacaaagattcatctcatggctcaatcaatctaatagtttagctact 9690425  T
Q  293 cataactaaacaatcaaatacatag-aaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttg 391  Q
    ||||||||||||||||||||||||| ||||| || |||||||||||| ||||||||||||||||||  ||||||||||  ||||| ||||| ||||| |     
T  9690424 cataactaaacaatcaaatacatagaaaatagta-aacatacataaaccagaaccaactatgagttttgtgagatccaatgcgtgctcttcggcttccta 9690326  T
Q  392 gtgccgtctatgctctgtttaggtctccaaaatcgcacac 431  Q
    ||  |||||||||| |||||||||||||||||||||||||    
T  9690325 gtatcgtctatgctatgtttaggtctccaaaatcgcacac 9690286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 197 - 426
Target Start/End: Original strand, 35432836 - 35433063
Alignment:
Q  197 tttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctactcata 296  Q
    |||||||||||||||||| ||||    | |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||  ||||||||    
T  35432836 tttcattgatatcaaagagagtttcagataaattacatggttcacagatcacaaagattcatcccatggcttaatcaatctaagagtttatttactcata 35432935  T
Q  297 actaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttggtgcc 396  Q
    ||||||||||||||||||||||||||   |  |||||||||| |||||||||||||||||| ||||||||| |    ||| ||||  ||||  |||||||    
T  35432936 actaaacaatcaaatacatagaaata--gtggcatacataaaccagaaccaactatgagtttggtgagatctactatgtgctcttaggctttctggtgcc 35433033  T
Q  397 gtctatgctctgtttaggtctccaaaatcg 426  Q
    ||||||||||||||||||||||||||||||    
T  35433034 gtctatgctctgtttaggtctccaaaatcg 35433063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 34653016 - 34653096
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||    
T  34653016 taagatcaatttatgtgattgcaagaagttagggttaatagtcatgcaaacaatcatatgaaaagcaatgaacacaaataa 34653096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 478 - 541
Target Start/End: Original strand, 6453052 - 6453115
Alignment:
Q  478 gccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaaacccgtaac 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6453052 gccgaataattgcagcccgaattttgaagagggctttttagcccgacccgtaaaaacccgtaac 6453115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 253 - 369
Target Start/End: Complemental strand, 36330447 - 36330329
Alignment:
Q  253 attcatctcatggcttaattaatctaagagtttagctactcataactaaa-caatcaaatacatagaaataatataacatacataaatcagaaccaacta 351  Q
    ||||||||||| ||||| | ||||||| || | ||||||||||||| ||| |||| ||  |||||||||||||| |||||||||||||||||||||||||    
T  36330447 attcatctcattgcttagtgaatctaaaagctaagctactcataaccaaaacaattaataacatagaaataatagaacatacataaatcagaaccaacta 36330348  T
Q  352 tgagttgg-gtgagatcca 369  Q
    |||||||| ||||||||||    
T  36330347 tgagttggtgtgagatcca 36330329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 88 - 296
Target Start/End: Original strand, 1810664 - 1810868
Alignment:
Q  88 atttttaagatcaatttatgtgattgaaagaagttagggttagtagtcatac-aaacaatcataagaaaagcaatgaaaacaaataaataattctcaata 186  Q
    |||| |||||||||||||||| |||| ||||||||||||||| ||||||| | ||||||||||| ||||| ||||||| ||    |||||||||||||||    
T  1810664 atttctaagatcaatttatgtaattgtaagaagttagggttaatagtcatgcaaaacaatcatatgaaaaacaatgaacac----aaataattctcaata 1810759  T
Q  187 aagattaggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaa-agattcatctcatggcttaattaatctaagagttt 285  Q
    |||| ||||  | |||||| || ||||| | |||  |||||||| |||| |||| |||||| || |||||||||||||| ||  ||||||||| ||| ||    
T  1810760 aagactaggaatccattga-attaaagagacttc-aaacaaatttcatgattcatagatcataatagattcatctcatgactcgattaatctaggagctt 1810857  T
Q  286 agctactcata 296  Q
    | |||||||||    
T  1810858 aactactcata 1810868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 3195016 - 3194945
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaa 164  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| |||||||||||||    
T  3195016 taagatcaatttatgtgattgcaagaagttagggttaatagtcatgcaaacaatcatatgaaaagcaatgaa 3194945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 6238221 - 6238277
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  6238221 gggccgaataattggagcccgaaatttgaagagggctttttagcccggcccgtaaaa 6238277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 6899931 - 6899987
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  6899931 gggccgaataattggagcccgaaatttgaagagggctttttagcccggcccgtaaaa 6899987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 17944508 - 17944428
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||| ||||||||||||  |||||||||||| | ||||||    
T  17944508 taagatcaatttatgtgattgcaagaagctagggttaatagtcatgcaaacaatcatataaaaagcaatgaacataaataa 17944428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 19686027 - 19685945
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatc--ataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||  ||| ||||||||||||| ||||||||    
T  19686027 taagatcaatttatgtgattgtaagaagctagggttaatagtcatgcaaacaatcatatatgaaaagcaatgaacacaaataa 19685945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 19689410 - 19689328
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatc--ataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||  ||| ||||||||||||| ||||||||    
T  19689410 taagatcaatttatgtgattgtaagaagctagggttaatagtcatgcaaacaatcatatatgaaaagcaatgaacacaaataa 19689328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 478 - 532
Target Start/End: Original strand, 24477324 - 24477378
Alignment:
Q  478 gccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  24477324 gccgaataattggagcccgaaatttgaagagggctttttagcccggcccgtaaaa 24477378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 4699995 - 4699939
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  4699995 gggccgaataattggagcccgaaatttgaatagggctttttagcccggcccgtaaaa 4699939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 35838146 - 35838202
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  35838146 gggccgaataattggagcccgaaatttgaatagggctttttagcccggcccgtaaaa 35838202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 6955856 - 6955801
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  6955856 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 6955801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 9996279 - 9996334
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  9996279 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 9996334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 10642110 - 10642055
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  10642110 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 10642055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 21731753 - 21731808
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  21731753 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 21731808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 35038817 - 35038762
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  35038817 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 35038762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 38356090 - 38356035
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  38356090 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 38356035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 25185240 - 25185167
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcata-caaacaatcataagaaaagcaatgaaaacaa 169  Q
    ||||||||||||||||| |||||| |||||||| ||||||||  |||||||||||  |||||||||||| ||||    
T  25185240 atcaatttatgtgattgcaagaagctagggttattagtcatataaaacaatcatataaaaagcaatgaacacaa 25185167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 36016310 - 36016365
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| ||||| || || ||||||||||||||||||||||||||||||    
T  36016310 gggccgaataattggagcccaaaatt-gaagagggctttttagcccggcccgtaaaa 36016365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 2453186 - 2453114
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||| ||| ||||||||||||||| |||||||     |||||||| ||||||||||||| ||||||||    
T  2453186 atcaatttatgtggttgcaagaagttagggttaatagtcat----gcaatcatatgaaaagcaatgaatacaaataa 2453114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 532
Target Start/End: Original strand, 1845461 - 1845513
Alignment:
Q  479 ccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    ||||||||||| || ||||| || ||||||||||||||||||||||||||||||    
T  1845461 ccgaataattggagtccgaaatt-gaagagggctttttagcccggcccgtaaaa 1845513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 476 - 541
Target Start/End: Complemental strand, 33908193 - 33908129
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaaacccgtaac 541  Q
    |||||||| ||||| ||||||||||||    |||||||||||||||||||||||||| ||||||||    
T  33908193 gggccgaaaaattggagcccgaatttttct-agggctttttagcccggcccgtaaaagcccgtaac 33908129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 25185088 - 25184989
Alignment:
Q  260 tcatggcttaattaatctaagagtttagctactcataactaaacaatcaaatacataga-aataatataacatacataaatcagaaccaactatgagttg 358  Q
    |||||||| ||| || ||||||||||| | ||||||||||||||||||| |  |||| | || | || |||||||||||||| | |||||||||||||||    
T  25185088 tcatggctcaatcaaactaagagtttaaccactcataactaaacaatcataagcataaacaagagta-aacatacataaatccggaccaactatgagttg 25184990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 42860380 - 42860325
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| ||||||||  |||||||||| |||||||||| ||||||||||    
T  42860380 gggccgaataattggagcccgaa-attgaagagggttttttagcccagcccgtaaaa 42860325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 539
Target Start/End: Complemental strand, 38976313 - 38976251
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaaacccgta 539  Q
    ||||| |||||||||||||||||||||  | ||| ||||||||||||||||| |||| ||||||    
T  38976313 gggcctaataattgcagcccgaattttccaaagg-ctttttagcccggcccgaaaaagcccgta 38976251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 541
Target Start/End: Original strand, 31230322 - 31230356
Alignment:
Q  507 agggctttttagcccggcccgtaaaaacccgtaac 541  Q
    |||||||||||||||||||||||||| ||||||||    
T  31230322 agggctttttagcccggcccgtaaaatcccgtaac 31230356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 4732096 - 4732169
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaa-caatcataagaaaagcaatgaaaacaa 169  Q
    ||||||| |||| |||| |||||| |||||||| |||||||||||| |||| |||  |||||||||||| ||||    
T  4732096 atcaattcatgtaattgcaagaagctagggttaatagtcatacaaagcaattatataaaaagcaatgaacacaa 4732169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 359
Target Start/End: Original strand, 16090911 - 16090939
Alignment:
Q  331 tacataaatcagaaccaactatgagttgg 359  Q
    |||||||||||||||||||||||||||||    
T  16090911 tacataaatcagaaccaactatgagttgg 16090939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 88 - 431
Target Start/End: Complemental strand, 18392255 - 18391917
Alignment:
Q  88 atttttaagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataa 187  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || | |  ||||||||    |||| |||||    
T  18392255 atttctaagatcaatttatgtgattgaaagaagctagggttagtagtcatacaaacaatcataagaaaaccattaagcacaaataa----ttctgaataa 18392160  T
Q  188 agattaggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttag 287  Q
    ||| ||||||||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  18392159 agactaggttttcattgatgtcaaagagagttcttaacaaattacatgct-cacagatcacaaagattcatctcatggcttaatcaatttaagagtttag 18392061  T
Q  288 ctactcataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagctt 387  Q
    || ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18392060 cttctcataactaaaacatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccaccgcgtgttcttcagctt 18391961  T
Q  388 cttggtgccgtctatgctctgtttaggtctccaaaatcgcacac 431  Q
    | ||||| ||||||||||||||||||||||||||||||||||||    
T  18391960 cctggtgtcgtctatgctctgtttaggtctccaaaatcgcacac 18391917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 93 - 477
Target Start/End: Complemental strand, 6195675 - 6195318
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  | |  ||||||||    |||| |||||||| |    
T  6195675 taagatcaatttatgtgattgaaagaagccagggttagtagtcatacaaacaatcataagaaaagcgttaagcacaaataa----ttctgaataaagact 6195580  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||| ||| |||||||  |||| |||||||||||||| | |||||||||||||||||||||||||||                      |||||    
T  6195579 aggttttcatcgatgtcaaagagcgttcgtaacaaattacatgct-cacagatcacaaagattcatctcatgg----------------------ctact 6195503  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  6195502 cataactaaacaatcaaatacatagaaataatagaacatacataaatcagaaccaactatgagttgggtgagatccaccacgtgttcttcagcttcttgg 6195403  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgcacacctttaatctctggttgcttttgacttttatagacacaaaattaggg 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  6195402 tgccgtctatgctctgtttaggtctccaaaatcgcacacctttaatctctagttgcttctgacttttatagacacaaaattaggg 6195318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 97 - 427
Target Start/End: Complemental strand, 33898179 - 33897853
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagattaggt 196  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |  ||    |||||||||| |||||||| |||||    
T  33898179 atcaatttatgtgattgaaagaagctagggttagtagtcatacaaacaatcataagaaaagcattaagcac----aaataattctgaataaagactaggt 33898084  T
Q  197 tttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctactcata 296  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  33898083 tttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagttcagctactcata 33897984  T
Q  297 actaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttggtgcc 396  Q
    ||||||||||||||||||||||||  |   |||||||||||| |||||||||||||||| | |||||||||||  |||||||||| |||||| ||||| |    
T  33897983 actaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactatgagcttggtgagatccaatgcgtgttctttagcttcctggtgtc 33897884  T
Q  397 gtctatgctctgtttaggtctccaaaatcgc 427  Q
     ||||||||||||||  ||||||||||||||    
T  33897883 ttctatgctctgtttttgtctccaaaatcgc 33897853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 97 - 427
Target Start/End: Original strand, 23441549 - 23441875
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagattaggt 196  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |  ||    |||||||||| |||||||| |||||    
T  23441549 atcaatttatgtgattgaaagaagctagggttagtagtcatacaaacaatcataagaaaagcattaagcac----aaataattctgaataaagactaggt 23441644  T
Q  197 tttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctactcata 296  Q
    |||||||||  ||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||    
T  23441645 tttcattgaagtcaaaaagagttcttaacaaattacatggttcacagatcacaaagattcatatcatggcttaatcaatctaagagttcagctactcata 23441744  T
Q  297 actaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttggtgcc 396  Q
    ||||||||||||||||||||||||  |   |||||||||||| |||||||||||||||||| |||||||||||  |||||||||| |||||| ||||| |    
T  23441745 actaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactatgagtttggtgagatccaatgcgtgttctttagcttcctggtgtc 23441844  T
Q  397 gtctatgctctgtttaggtctccaaaatcgc 427  Q
     ||||||||||||||  ||||||||||||||    
T  23441845 ttctatgctctgtttttgtctccaaaatcgc 23441875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 93 - 423
Target Start/End: Original strand, 34552945 - 34553275
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||| || | |  ||||||||    |||| |||||||| |    
T  34552945 taagatcaatttatgtgattgaaagaaactagggttagtagtcatacaaacaatcataaaaaaaacattaagcacaaataa----ttctgaataaagact 34553040  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| ||||||| |||||||||||||| |||||    
T  34553041 aggttttcattgatgtcaaagagagttcttaacaaattacatgct-cacagatcacaaagattcatctcattgcttaatcaatctaagagtttaactact 34553139  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaac-----caactatgagttgggtgagatccatcgcgtgttcttcagctt 387  Q
    ||||||||||||||||||||||||||||  |   |||||||||||| ||||||     |||||||||||||||||||||||| |||||||||||||||||    
T  34553140 cataactaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactcaactatgagttgggtgagatccaccgcgtgttcttcagctt 34553239  T
Q  388 cttggtgccgtctatgctctgtttaggtctccaaaa 423  Q
    | ||||| ||||||||||||||||||||||||||||    
T  34553240 cctggtgtcgtctatgctctgtttaggtctccaaaa 34553275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 172 - 427
Target Start/End: Original strand, 50197252 - 50197506
Alignment:
Q  172 aaataattctcaataaagattaggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaat 271  Q
    ||||||||||  ||||||| ||||||||||||||| ||||||  |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||    
T  50197252 aaataattctgtataaagactaggttttcattgatgtcaaagggagttcttaacaaattacatgct-cactgatcacaaagattcatctcatggcttaat 50197350  T
Q  272 taatctaagagtttagctactcataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatc 371  Q
     ||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |    
T  50197351 caatctaagagtttagttactcataactaaacaattaaatacatagaaataatagaacatacataaatcagaaccaactatgagctgggtgagatccacc 50197450  T
Q  372 gcgtgttcttcagcttcttggtgccgtctatgctctgtttaggtctccaaaatcgc 427  Q
    |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||    
T  50197451 gcgtgttctttagcttcctggtgtcgtctatgctctgtttaggtctccaaaatcgc 50197506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 93 - 296
Target Start/End: Original strand, 3087986 - 3088189
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatca------taagaaaagcaatgaaaacaaataaataattctcaata 186  Q
    |||||||||||||| || ||||||||||||||||||| ||||||||||||||||||      ||||||||||| | |  ||| |||| ||    | ||||    
T  3087986 taagatcaatttatatggttgaaagaagttagggttattagtcatacaaacaatcacaatcataagaaaagcattaagcacagataatta----tgaata 3088081  T
Q  187 aagattaggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagttta 286  Q
    |||| | |||||| |||||| ||||| | ||||||||||||||||||| | ||||| || ||||| ||||||||||||||||||| ||||||| || |||    
T  3088082 aagactgggtttttattgatgtcaaatagagttcttaacaaattacat-gctcacacattacaaa-attcatctcatggcttaatcaatctaaaagctta 3088179  T
Q  287 gctactcata 296  Q
     |||||||||    
T  3088180 actactcata 3088189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 12745616 - 12745672
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  12745616 gggccgaataattggagcccgaaatttgaatagggctttttagcccggcccgtaaaa 12745672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 12756605 - 12756661
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  12756605 gggccgaataattggagcccgaaatttgaatagggctttttagcccggcccgtaaaa 12756661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 9660892 - 9660837
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  9660892 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 9660837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 33189065 - 33189120
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  33189065 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 33189120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 42763318 - 42763263
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||| ||||||||    
T  42763318 gggccgaataattgaagcccgaaatt-gaagagggctttttagcccggtccgtaaaa 42763263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 43781236 - 43781181
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || |||||||| |||||||||||||||||||||    
T  43781236 gggccgaataattggagcccgaaatt-gaagagggttttttagcccggcccgtaaaa 43781181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 45757307 - 45757252
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || |||||||||||||||||||||||| |||||    
T  45757307 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccataaaa 45757252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 367
Target Start/End: Original strand, 13795388 - 13795473
Alignment:
Q  284 ttagctactcataactaa-acaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgg-gtgagatc 367  Q
    |||| |||||| |||||| ||||||||  ||| || ||||||  |||||||||| |||| ||||||||||||||||| ||||||||    
T  13795388 ttagttactcacaactaagacaatcaataacaaaggaataatgaaacatacatatatcaaaaccaactatgagttggtgtgagatc 13795473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 93 - 429
Target Start/End: Original strand, 28894742 - 28895073
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |  ||    |||||||||| |||||||| |    
T  28894742 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcattaagcac----aaataattctgaataaagact 28894837  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    ||||||| |||||| ||||||| ||||||||||||||||||| | ||||||||||||||||||||||| |||||||||| ||||||||||||||| |||     
T  28894838 aggtttttattgatgtcaaagagagttcttaacaaattacat-gctcacagatcacaaagattcatcttatggcttaatcaatctaagagtttagataca 28894936  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  28894937 cataactaaacaattaaatacatagaaataatagaacatacataaatcagaaccaactatgagttgggtgagatccaccgcgtgttcttcagcttcctgg 28895036  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgcac 429  Q
    ||||||||||||| |||||||||||||||||||||||    
T  28895037 tgccgtctatgctatgtttaggtctccaaaatcgcac 28895073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 93 - 428
Target Start/End: Original strand, 35027394 - 35027725
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | |  ||    |||||||||| |||||||| |    
T  35027394 taagatcaatttatgtgattgaaagaagctagggttagtagtcatataaacaatcataagaaaagcattaagcac----aaataattctgaataaagact 35027489  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  35027490 aggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagcttagctact 35027589  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    |||||||||||||||||| |||||||||  |   |||||||||||| |||||||||||||||| |||||||||||||  ||||||||||||||||| |||    
T  35027590 cataactaaacaatcaaacacatagaaaatagcgaacatacataaaccagaaccaactatgagatgggtgagatccactgcgtgttcttcagcttcctgg 35027689  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgca 428  Q
    ||||||||||||||||||||||||||||||||||||    
T  35027690 tgccgtctatgctctgtttaggtctccaaaatcgca 35027725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 93 - 475
Target Start/End: Original strand, 33679449 - 33679824
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||    |||| |||||||| |    
T  33679449 taagataaatttatgtgattgaaagaagttagggttaatagtcatgcaaacaatcatacgaaaagcaatgaacacaaataa----ttctaaataaagact 33679544  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| |||||||||||||||||||  || ||| || ||||||||||||||||||||||||| ||||||||||||||||||||    
T  33679545 aggttttcattgatgtcaaagagagttcttaacaaattacatactt-acatattacaaagattcatctcatggcttaatcaatctaagagtttagctact 33679643  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||| |||| |||    
T  33679644 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactattagttgggtgagatccattacgtgttcttcaacttcctgg 33679743  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgcacacctttaatc-tctggttgcttttgacttttatagacacaaaattag 475  Q
    ||  |||||||||||||||||||||| ||||||||| ||   ||| | ||||||||| | ||||||||||||||| | ||||||    
T  33679744 tgttgtctatgctctgtttaggtctctaaaatcgcatac---taagcttctggttgcatctgacttttatagacaaagaattag 33679824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 93 - 422
Target Start/End: Complemental strand, 12746663 - 12746338
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||||| ||||||||    |||| |||||||| |    
T  12746663 taagatcaatttatgtgattgaaagaagctagggttaatagtcatgcaaacaatcatacgaaaagcaatgaacacaaataa----ttctgaataaagact 12746568  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||    
T  12746567 aggttttcattgatgtcaaagagagttattaacaaattacatggttcacagatcacaaagatccatctcatggcttaatcaatttaagagtttagctact 12746468  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    ||||||||||||||||||||||||||||  |   |||||||||||| |||||||||||||||||| ||||| |||||  ||||||||||| ||||| |||    
T  12746467 cataactaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactatgagtttggtgaaatccaatgcgtgttcttcggcttcctgg 12746368  T
Q  393 tgccgtctatgctctgtttaggtctccaaa 422  Q
    || |||||||||||| ||||||||||||||    
T  12746367 tgtcgtctatgctctatttaggtctccaaa 12746338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 172 - 477
Target Start/End: Original strand, 11296383 - 11296684
Alignment:
Q  172 aaataattctcaataaagattaggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaat 271  Q
    |||||||| | |||||||| ||||||||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||||||||| |||||||||||    
T  11296383 aaataattttgaataaagaataggttttcattgatgtcaaagagagttcttaacaaattacatgct-cacagatcacaaagattcatcacatggcttaat 11296481  T
Q  272 taatctaagagtttagctactcataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatc 371  Q
     ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||      
T  11296482 caatttaagagtttagctactcataactaaacaaccaaatacatagaaataatagaacatacataaatcagaaccaactatgagttgggtgagatccaca 11296581  T
Q  372 gcgtgttcttcagcttcttggtgccgtctatgctctgtttaggtctccaaaatcgcacacctttaatctctggttgcttttgacttttatagacacaaaa 471  Q
    | ||||||||||||||| |||||  ||||||||||| ||||||||||||||||| ||   ||||||||||||||||||| ||||||||||||||||||||    
T  11296582 gtgtgttcttcagcttcctggtgttgtctatgctctatttaggtctccaaaatcaca---ctttaatctctggttgcttctgacttttatagacacaaaa 11296678  T
Q  472 ttaggg 477  Q
    ||||||    
T  11296679 ttaggg 11296684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 172 - 429
Target Start/End: Original strand, 15579218 - 15579474
Alignment:
Q  172 aaataattctcaataaagattaggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaat 271  Q
    |||||||| | ||||||||||||| |||||||||| | ||||| ||||||||||||||||||    ||||||||| |||||||| ||||||| |||||||    
T  15579218 aaataattatgaataaagattagggtttcattgatgttaaagagagttcttaacaaattaca-ccatcacagatcgcaaagatttatctcatagcttaat 15579316  T
Q  272 taatctaagagtttagctactcataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatc 371  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||  |   ||||||||||||||||||||||||||||||||||||||||| |      
T  15579317 taatctaagagtttagctactcataacaaaacaatcaaatacatagaaaatagtgaacatacataaatcagaaccaactatgagttgggtgagatctact 15579416  T
Q  372 gcgtgttcttcagcttcttggtgccgtctatgctctgtttaggtctccaaaatcgcac 429  Q
    ||||||||| | | ||| |||||||||||||||||| |||||||||||||||||||||    
T  15579417 gcgtgttctgcggtttcctggtgccgtctatgctctatttaggtctccaaaatcgcac 15579474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 17696451 - 17696366
Alignment:
Q  88 atttttaagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    |||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||||| ||||| ||||||||    
T  17696451 atttctaagatcaatttatgtgattgcaagaagttagggttaatagtcatacaaacagtcatatgaaaagcgatgaacacaaataa 17696366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 34502200 - 34502120
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||||| ||||||||||||| ||||||||    
T  34502200 taagatcaatttatgtgattgtaagaagctagggttaatagtcatgcaaacaatcatatgaaaagcaatgaacacaaataa 34502120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 31123287 - 31123207
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||| |  ||||||||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||||    
T  31123287 taagatcaattaacatgattgaaagaagctagggttaatagtcatgcaaacaatcataataaaagcaatgaaaacaaataa 31123207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 31262628 - 31262548
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| |||||||||| |||| || |||| |||||||||||| ||||||||||||| ||||||||    
T  31262628 taagatcaatttatgtgattgcaagaagttagagttaataatcatgcaaacaatcatatgaaaagcaatgaacacaaataa 31262548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 2331139 - 2331059
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    |||||||||||||||| ||||||||||| |||| | | ||||||| |||||||||||| ||||||||||||| ||||||||    
T  2331139 taagatcaatttatgttattgaaagaagctaggatcaatagtcatgcaaacaatcatatgaaaagcaatgaacacaaataa 2331059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 5618573 - 5618649
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||| |||||| |||||||| ||||||| |||||||||||| |||||||||| || ||||||||    
T  5618573 atcaatttatgtgattgcaagaagctagggttaatagtcatgcaaacaatcatatgaaaagcaataaacacaaataa 5618649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 7560436 - 7560516
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||| || ||||||||||||| |||||||| | |||||||||||||||||||||||| || |||| | ||||||    
T  7560436 taagatcaattaatatgattgaaagaagctagggttaattgtcatacaaacaatcataagaaaaacactgaacataaataa 7560516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 9314046 - 9314139
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaaga 190  Q
    ||||||||||||||||||||| || ||| |||||||| ||||||| ||||||||||||  |||||||||||| |    ||||||||||| ||||||||    
T  9314046 taagatcaatttatgtgattgcaataagctagggttaatagtcatgcaaacaatcatataaaaagcaatgaaca----taaataattctgaataaaga 9314139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 11369647 - 11369591
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||    
T  11369647 gggccgaataattggagcccgaaatttaaagagggctttttagcccggcccgtaaaa 11369591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 2330492 - 2330407
Alignment:
Q  88 atttttaagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    |||| |||||||||||||||| ||||||||||  ||| |||| ||||||| |||| ||||||| ||||| ||||||| ||||||||    
T  2330492 atttctaagatcaatttatgttattgaaagaatctagagttaatagtcatgcaaataatcatatgaaaaacaatgaacacaaataa 2330407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 10997779 - 10997834
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  10997779 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 10997834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 15065966 - 15066021
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  15065966 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 15066021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 359
Target Start/End: Original strand, 7560607 - 7560690
Alignment:
Q  276 ctaagagtttagctactcataactaaacaatcaaatacataga-aataatataacatacataaatcagaaccaactatgagttgg 359  Q
    ||||||| ||||||||||||||||||||||||| | ||||  | || | || |||||||||||||| ||||||||||||||||||    
T  7560607 ctaagagattagctactcataactaaacaatcataaacatttacaagagta-aacatacataaatccgaaccaactatgagttgg 7560690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 28117693 - 28117617
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||| |||||| |||||||| || ||||  |||||||||||  |||||||||||| | ||||||    
T  28117693 atcaatttatgtgattgcaagaagctagggttaataatcatgaaaacaatcatataaaaagcaatgaacataaataa 28117617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 22920365 - 22920307
Alignment:
Q  115 aagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    |||||| |||||||| ||||||||||| |||| ||| ||||||||||||| ||||||||    
T  22920365 aagaagctagggttaatagtcatacaagcaattatatgaaaagcaatgaacacaaataa 22920307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 2330995 - 2330896
Alignment:
Q  260 tcatggcttaattaatctaagagtttagctactcataactaaacaatcaaatacataga-aataatataacatacataaatcagaaccaactatgagttg 358  Q
    |||||||| ||| |||||||||||||||||||||||| | |||| |||| |  |||| | || | || |||||||||||||| |||| ||||||||||||    
T  2330995 tcatggctcaatcaatctaagagtttagctactcatatcaaaacgatcataagcataaacaagagta-aacatacataaatccgaactaactatgagttg 2330897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 3827081 - 3827126
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaa 142  Q
    ||||||| |||| |||| ||||||||||||||| ||||||||||||    
T  3827081 atcaattcatgtaattgcaagaagttagggttaatagtcatacaaa 3827126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 22464244 - 22464192
Alignment:
Q  121 ttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||| ||||||| ||||||||||||  |||||||||||| | ||||||    
T  22464244 ttagggttaatagtcatgcaaacaatcatataaaaagcaatgaacataaataa 22464192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 93 - 432
Target Start/End: Complemental strand, 13449 - 13114
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||  |||||||||||| ||||||||    |||| |||||||| |    
T  13449 taagatcaatttatgtgattgaaagaagttagggttaatagtcatgcaaacaattatacaaaaagcaatgaacacaaataa----ttctgaataaagact 13354  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13353 aggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctact 13254  T
Q  293 cataactaaacaatcaaatacata-gaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttg 391  Q
    ||||||||||||||||||||||||  |||||||  |||||||||||| |||||||||| ||||||| |||||||||||  ||||||||||| ||||| ||    
T  13253 cataactaaacaatcaaatacatataaaataat-gaacatacataaaccagaaccaacaatgagtttggtgagatccaatgcgtgttcttcggcttcctg 13155  T
Q  392 gtgccgtctatgctctgtttaggtctccaaaatcgcacacc 432  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  13154 gtgccgtctatgctctgtttaggtctcctaaatcgcccacc 13114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0911 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 93 - 423
Target Start/End: Complemental strand, 4420 - 4096
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | | |      ||||||||| |||||||| |    
T  4420 taagatcaatttatgtgattgaaagaagctagggttagtagtcatacaaacaatcataagaaaagcaaagcaca------aataattctgaataaagact 4327  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||  ||    
T  4326 aggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatctatctaagagtttagcgtct 4227  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    ||||||||||||||||||||||||||||| |   ||||| |||||| |||||||||||||||||| || ||||||||  |||||||||| ||||||||||    
T  4226 cataactaaacaatcaaatacatagaaattagcgaacatgcataaaccagaaccaactatgagtttggcgagatccactgcgtgttctttagcttcttgg 4127  T
Q  393 tgccgtctatgctctgtttaggtctccaaaa 423  Q
    ||||||||||||| |||||||||||||||||    
T  4126 tgccgtctatgctttgtttaggtctccaaaa 4096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 122 - 429
Target Start/End: Original strand, 19975 - 20278
Alignment:
Q  122 tagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagattaggttttcattgatatcaaagaaagttct 221  Q
    |||||||||||||||||||||||||||||||||||||| | |  ||    |||||||||| |||||||| ||||||||||||||| ||||||| ||||||    
T  19975 tagggttagtagtcatacaaacaatcataagaaaagcattaagcac----aaataattctgaataaagactaggttttcattgatgtcaaagagagttct 20070  T
Q  222 taacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctactcataactaaacaatcaaatacatagaaat 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||     
T  20071 taacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctactcataactaaaaaatcaaatacatagaaaa 20170  T
Q  322 aatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttggtgccgtctatgctctgtttaggtctccaa 421  Q
     ||  |||||||||||| ||||||||||||||||||||||||||||||  || |||||||||||||| ||||| ||||||||||||||||||||||||||    
T  20171 tatcgaacatacataaaccagaaccaactatgagttgggtgagatccactgcatgttcttcagcttcctggtgtcgtctatgctctgtttaggtctccaa 20270  T
Q  422 aatcgcac 429  Q
    ||||||||    
T  20271 aatcgcac 20278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 93 - 423
Target Start/End: Complemental strand, 4250243 - 4249917
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||    |||| |||||||| |    
T  4250243 taagatcaatttatgtgattgaaagaagttagggttaatagtcatgcaaacaatcatacgaaaagcaatgaacacaaataa----ttctgaataaagact 4250148  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  4250147 aggttttcattgatgtcaaagagagtacttaacaaattacatggttcacagatcacaaagattcatctcatgacttaatcaatctaagagtttagctact 4250048  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    |||||||| |||||||||| ||||||||  |   | |||||||||| |||||||||||||||||| |||||||||||  ||||||||||||||||| |||    
T  4250047 cataactacacaatcaaatgcatagaaaatagtgagcatacataaaccagaaccaactatgagtttggtgagatccaatgcgtgttcttcagcttcctgg 4249948  T
Q  393 tgccgtctatgctctgtttaggtctccaaaa 423  Q
    || |||||||||| |||||||||||||||||    
T  4249947 tgtcgtctatgctatgtttaggtctccaaaa 4249917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 97 - 427
Target Start/End: Complemental strand, 28327297 - 28326970
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagattaggt 196  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |  ||    |||||||||| |||||||| |||||    
T  28327297 atcaatttatgtgattgaaagaagctagggttagtagtcatacaaacaatcataagaaaagcattaagcac----aaataattctgaataaagactaggt 28327202  T
Q  197 tttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctactcata 296  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  28327201 tttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagttcagctactcata 28327102  T
Q  297 actaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttc-ttcagcttcttggtgc 395  Q
    ||||||||||||||||||||||||  |   |||||||||||| |||||||||||||||||| |||||||||||  |||||||| || |||||| |||||     
T  28327101 actaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactatgagtttggtgagatccaatgcgtgttcttttagcttcctggtgt 28327002  T
Q  396 cgtctatgctctgtttaggtctccaaaatcgc 427  Q
    | ||||||||||||||  ||||||||||||||    
T  28327001 cttctatgctctgtttttgtctccaaaatcgc 28326970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 97 - 427
Target Start/End: Complemental strand, 28330622 - 28330295
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagattaggt 196  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |  ||    |||||||||| |||||||| |||||    
T  28330622 atcaatttatgtgattgaaagaagctagggttagtagtcatacaaacaatcataagaaaagcattaagcac----aaataattctgaataaagactaggt 28330527  T
Q  197 tttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctactcata 296  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  28330526 tttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagttcagctactcata 28330427  T
Q  297 actaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttc-ttcagcttcttggtgc 395  Q
    ||||||||||||||||||||||||  |   |||||||||||| |||||||||||||||||| |||||||||||  |||||||| || |||||| |||||     
T  28330426 actaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactatgagtttggtgagatccaatgcgtgttcttttagcttcctggtgt 28330327  T
Q  396 cgtctatgctctgtttaggtctccaaaatcgc 427  Q
    | ||||||||||||||  ||||||||||||||    
T  28330326 cttctatgctctgtttttgtctccaaaatcgc 28330295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 97 - 355
Target Start/End: Complemental strand, 3305703 - 3305449
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagattaggt 196  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |  ||    |||||||||| |||||||| |||||    
T  3305703 atcaatttatgtgattgaaagaagctagggttagtagtcatacaaacaatcataagaaaagcattaagcac----aaataattctgaataaagactaggt 3305608  T
Q  197 tttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctactcata 296  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  3305607 tttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagttcagctactcata 3305508  T
Q  297 actaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgag 355  Q
    ||||||||||||||||||||||||  |   |||||||||||| ||||||||||||||||    
T  3305507 actaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactatgag 3305449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 93 - 312
Target Start/End: Complemental strand, 27054728 - 27054514
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |  ||    |||||||||| ||||| || |    
T  27054728 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcattaagcac----aaataattctgaataatgact 27054633  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27054632 aggttttcattgatgtcaaagagagttcttaataaattacat-gctcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctact 27054534  T
Q  293 cataactaaacaatcaaata 312  Q
    ||||||||||||||||||||    
T  27054533 cataactaaacaatcaaata 27054514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 93 - 295
Target Start/End: Complemental strand, 19868840 - 19868642
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaa-caatcataagaaaagcaatgaaaacaaataaataattctcaataaagat 191  Q
    |||||||||||||||| |||| |||||| |||||||| ||||||| |||| |||||||| |||||||||  || ||||||||    |||| ||||||||     
T  19868840 taagatcaatttatgtaattggaagaagctagggttaatagtcatgcaaagcaatcatatgaaaagcaacaaacacaaataa----ttctgaataaagac 19868745  T
Q  192 taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaa-agattcatctcatggcttaattaatctaagagtttagcta 290  Q
    |||| || |||||| || || || |||| | |||||||||||||||||| ||||||||| |||||||||||||| ||  ||||||||| ||| |||||||    
T  19868744 taggattccattga-attaaggagagtt-taaacaaattacatggttcatagatcacaatagattcatctcatgactcgattaatctaggagcttagcta 19868647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 9157846 - 9157766
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||    
T  9157846 taagatcaatttatgtgattgcaagaagttagggttactagtcatgcaaacaatcatatgaaaagcaatgaacacaaataa 9157766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 9154673 - 9154593
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||||| ||||||||||||| ||||||||    
T  9154673 taagatcaatttatgtgattgcaagaagttaggattactagtcatgcaaacaatcatatgaaaagcaatgaatacaaataa 9154593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 18883071 - 18882991
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||||| ||||||||||||| ||||||||    
T  18883071 taagatcaatttatgtgattgtaagaagctagggttaatagtcatgcaaacaatcatatgaaaagcaatgaacacaaataa 18882991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 20536838 - 20536917
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||| || |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  20536838 taagatcaattaatatgattgaa-gaagttagggttaatagtcatacaaacaatcataagaaaagcaatgaacacaaataa 20536917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 312 - 464
Target Start/End: Complemental strand, 18551319 - 18551168
Alignment:
Q  312 acatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttggtgccgtctatgctctgttt 411  Q
    ||||||||| |||| |||||||||||||  ||| || ||||||||||||||| |||||  ||||||||||||||||  ||||| ||||||||||||||||    
T  18551319 acatagaaacaatagaacatacataaatttgaaacagctatgagttgggtgatatccactgcgtgttcttcagctttctggtgtcgtctatgctctgttt 18551220  T
Q  412 aggtctcc-aaaatcgcacacctttaatctctggttgcttttgacttttataga 464  Q
    |  ||||| |||||||  |  ||||||||| |||| |||| || ||||||||||    
T  18551219 aactctccgaaaatcg--cctctttaatctatggtcgcttatggcttttataga 18551168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 42354672 - 42354750
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaat 171  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||||| ||||||||||||| ||||||    
T  42354672 taagatcaatttatgtgattgcaagaagctagggttaatagtcatgcaaacaatcatatgaaaagcaatgaacacaaat 42354750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 44508667 - 44508586
Alignment:
Q  92 ttaagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    |||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||||| ||||| ||||||| ||||||||    
T  44508667 ttaagatcaatttatgtgattgcaagaagctagggttaatagtcatgcaaacaatcatatgaaaaacaatgaacacaaataa 44508586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 25491936 - 25491863
Alignment:
Q  223 aacaaattacatggttcacagatcacaa-agattcatctcatggcttaattaatctaagagtttagctactcat 295  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||||||| ||||||||||||    
T  25491936 aacaaattacatggttcatagatcacaatagattcatctcatggctcgattaatctaagagcttagctactcat 25491863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 43746351 - 43746295
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  43746351 gggccgaataattggagcccgaaatttgaagagggctttttagcccggcccgtaaaa 43746295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 273 - 359
Target Start/End: Original strand, 20537003 - 20537089
Alignment:
Q  273 aatctaagagtttagctactcataactaaacaatcaaatacataga-aataatataacatacataaatcagaaccaactatgagttgg 359  Q
    |||||||||||||||||||||||||||||||||| | | ||||||| || | || |||||||||||||| | ||||||||||||||||    
T  20537003 aatctaagagtttagctactcataactaaacaattataaacatagacaagagta-aacatacataaatctggaccaactatgagttgg 20537089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 11270832 - 11270780
Alignment:
Q  183 aataaagattaggttttcattgatatcaaagaaagttcttaacaaattacatg 235  Q
    |||||||| ||||||||||||||||||||||||||| ||||| ||||||||||    
T  11270832 aataaagaataggttttcattgatatcaaagaaagtacttaataaattacatg 11270780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 18551526 - 18551458
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaat 161  Q
    ||||||||||| ||   ||||||||||| |||||||||||| |||||||||||||||||||||| ||||    
T  18551526 taagatcaattaatacaattgaaagaagctagggttagtagccatacaaacaatcataagaaaatcaat 18551458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 21075955 - 21075900
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  21075955 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 21075900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 27877565 - 27877620
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  27877565 gggccgaataattggagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 27877620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 46219137 - 46219192
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || |||||||||||||||||| |||||||||||    
T  46219137 gggccgaataattggagcccgaaatt-gaagagggctttttagccgggcccgtaaaa 46219192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 46311897 - 46311952
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| ||||| || || ||||||||||||||||||||||||||||||    
T  46311897 gggccgaataattggagcccaaaatt-gaagagggctttttagcccggcccgtaaaa 46311952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 359
Target Start/End: Complemental strand, 46542019 - 46541946
Alignment:
Q  284 ttagctactcataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgg 359  Q
    ||||||||||||||||| ||||||||  ||| || ||||||  ||||||  |||||||||||||||||||||||||    
T  46542019 ttagctactcataactagacaatcaataacaaaggaataatgaaacata--taaatcagaaccaactatgagttgg 46541946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 10963261 - 10963194
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaa 164  Q
    ||||||| |||| |||| | |||| |||||||| |||||||||||||||| ||| |||||||||||||    
T  10963261 atcaattcatgtaattgcacgaagctagggttaatagtcatacaaacaattatatgaaaagcaatgaa 10963194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 10966770 - 10966703
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaa 164  Q
    ||||||| |||| |||| | |||| |||||||| |||||||||||||||| ||| |||||||||||||    
T  10966770 atcaattcatgtaattgcacgaagctagggttaatagtcatacaaacaattatatgaaaagcaatgaa 10966703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 491 - 537
Target Start/End: Original strand, 1695022 - 1695067
Alignment:
Q  491 agcccgaattttgaagagggctttttagcccggcccgtaaaaacccg 537  Q
    |||||||||||| || |||||||||||||||||||| ||||||||||    
T  1695022 agcccgaatttt-aatagggctttttagcccggcccttaaaaacccg 1695067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 23375010 - 23375068
Alignment:
Q  115 aagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    |||||| |||||||| ||||||||| | |||| ||| ||||||||||||| ||||||||    
T  23375010 aagaagctagggttaatagtcatacgagcaattatatgaaaagcaatgaacacaaataa 23375068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 29233868 - 29233926
Alignment:
Q  115 aagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    |||||| |||||||| ||||||||||| |||| ||| ||||| ||||||| ||||||||    
T  29233868 aagaagctagggttaatagtcatacaagcaattatatgaaaaacaatgaacacaaataa 29233926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 491 - 537
Target Start/End: Complemental strand, 31412206 - 31412161
Alignment:
Q  491 agcccgaattttgaagagggctttttagcccggcccgtaaaaacccg 537  Q
    |||||||||||| || |||||||||||||||||||| ||||||||||    
T  31412206 agcccgaatttt-aatagggctttttagcccggcccttaaaaacccg 31412161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 541
Target Start/End: Original strand, 43736052 - 43736086
Alignment:
Q  507 agggctttttagcccggcccgtaaaaacccgtaac 541  Q
    |||||||||||||||||||||||||| ||||||||    
T  43736052 agggctttttagcccggcccgtaaaagcccgtaac 43736086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 10959754 - 10959682
Alignment:
Q  97 atcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaa 169  Q
    ||||||| |||| |||| | |||| |||||||  ||||||||||| |||| ||| ||||||||||||| ||||    
T  10959754 atcaattcatgtaattgcacgaagctagggttgatagtcatacaagcaattatatgaaaagcaatgaacacaa 10959682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 93 - 429
Target Start/End: Complemental strand, 52976 - 52644
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||| |||||||||||| |||||||  |||| ||    |||||||||| |||||||| |    
T  52976 taagatcaatttatgtgattgaaagaagctaggattaatagtcatgcaaacaatcatacgaaaagctttgaacac----aaataattctgaataaagact 52881  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||    
T  52880 aggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagatacatctcatgtcttaatcaatctaagagtttagctact 52781  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    |||||||||| ||||||||| |||||||  |   |||||||||||| | |||||||||||||||| ||||||||||| |||||||||||||||||| |||    
T  52780 cataactaaataatcaaataaatagaaaatagcgaacatacataaacctgaaccaactatgagtttggtgagatccaccgcgtgttcttcagcttcctgg 52681  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgcac 429  Q
    |||||||||||||||||||||||||||| ||||||||    
T  52680 tgccgtctatgctctgtttaggtctccagaatcgcac 52644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 93 - 429
Target Start/End: Complemental strand, 29179 - 28847
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||| ||| |||||||| ||||| |  |||| ||    |||||||||| |||||||| |    
T  29179 taagatcaatttatgtgattgaaagaagctaggtttaatagtcatgcaatcaatcatatgaaaatctttgaacac----aaataattctgaataaagact 29084  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29083 aggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctact 28984  T
Q  293 cataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttgg 392  Q
    |||||||||| |||||||||||||||||  |   |||||||||||| || ||||||||||||||| |||||||||||  |||||||||||  |||| |||    
T  28983 cataactaaataatcaaatacatagaaaatagtgaacatacataaaccataaccaactatgagtttggtgagatccaatgcgtgttcttcgacttcctgg 28884  T
Q  393 tgccgtctatgctctgtttaggtctccaaaatcgcac 429  Q
    || ||||||||||||  ||||||| ||||||||||||    
T  28883 tgtcgtctatgctctaattaggtccccaaaatcgcac 28847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 93 - 427
Target Start/End: Complemental strand, 4116 - 3786
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaataattctcaataaagatt 192  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||| ||||| ||||||| ||||||||    |||| |||||||| |    
T  4116 taagatcaatttatgtgattgaaagaagctagggttaatagtcatgcaaccaatcatacgaaaaccaatgaacacaaataa----ttctgaataaagact 4021  T
Q  193 aggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagtttagctact 292  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4020 aggttttcattgatgtcaaagagagttcttaacaaattacatggtttacatatcacaaagattcttctcatggcttaattaatctaagagtttagctact 3921  T
Q  293 cataactaaacaatcaaatacatag-aaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttg 391  Q
    ||||||||||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||| |||||||||||  ||||||||||| ||||| ||    
T  3920 cataactaaacaatcaaatacatagaaaatagta-aacatacataaaccagaaccaactatgagtttggtgagatccaatgcgtgttcttcggcttcctg 3822  T
Q  392 gtgccgtctatgctctgtttaggtctccaaaatcgc 427  Q
    | | ||||||  |||| |||||||||||||||||||    
T  3821 gcgtcgtctacactctatttaggtctccaaaatcgc 3786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637 (Bit Score: 169; Significance: 3e-90; HSPs: 5)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 186 - 477
Target Start/End: Complemental strand, 2027 - 1739
Alignment:
Q  186 aaagattaggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaattaatctaagagttt 285  Q
    ||||| |||||||||||| || ||||||| |||||||||||||||||||| | ||||||||| |||||||||||||||||||| || |||||||||||||    
T  2027 aaagaataggttttcatttatgtcaaagagagttcttaacaaattacatgct-cacagatcataaagattcatctcatggcttcatcaatctaagagttt 1929  T
Q  286 agctactcataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagc 385  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||| |||||| |||||||||||||| |||||| |||||||||| |||    
T  1928 agctactcataactaaacaatcaaatgcatagaaataatagaacatacttaaatcaaaaccaattatgagttgggtgaaatccattgcgtgttctttagc 1829  T
Q  386 ttcttggtgccgtctatgctctgtttaggtctccaaaatcgcacacctttaatctctggttgcttttgacttttatagacacaaaattaggg 477  Q
    ||| ||||  ||||| |||||||||||||||||||||||||||||||  ||||||||||| |||| || |||| ||||| | ||||||||||    
T  1828 ttcctggtatcgtctctgctctgtttaggtctccaaaatcgcacacc--taatctctggtcgcttctggctttcatagaaaaaaaattaggg 1739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 296 - 477
Target Start/End: Complemental strand, 838 - 659
Alignment:
Q  296 aactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttggtgc 395  Q
    |||||||||||||||| ||| ||||||||| ||||||||||||||| |||||||| |||||||||||| |||||| |||||||||||||| || |||||     
T  838 aactaaacaatcaaatgcatggaaataatagaacatacataaatcaaaaccaactttgagttgggtgaaatccattgcgtgttcttcagcctcctggtgt 739  T
Q  396 cgtctatgctctgtttaggtctccaaaatcgcacacctttaatctctggttgcttttgacttttatagacacaaaattaggg 477  Q
    ||| |||||||| ||||||||||||||||||||||||  |||||||||||| ||| || |||||||||||||||||||||||    
T  738 cgtttatgctctctttaggtctccaaaatcgcacacc--taatctctggtttcttctggcttttatagacacaaaattaggg 659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 296 - 477
Target Start/End: Complemental strand, 1108 - 929
Alignment:
Q  296 aactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttggtgc 395  Q
    |||||||||||||||| |||| |||||||| ||||||||||||||| |||||||||| |||||||||| |||||| ||||||||||||||||| | |||     
T  1108 aactaaacaatcaaatgcataaaaataatagaacatacataaatcaaaaccaactataagttgggtgaaatccattgcgtgttcttcagcttcctagtgt 1009  T
Q  396 cgtctatgctctgtttaggtctccaaaatcgcacacctttaatctctggttgcttttgacttttatagacacaaaattaggg 477  Q
    |||| ||||||||||||||||||||||||||||||||  |||||||||||  ||| || |||||||||||||||||||||||    
T  1008 cgtccatgctctgtttaggtctccaaaatcgcacacc--taatctctggtcccttctggcttttatagacacaaaattaggg 929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 296 - 477
Target Start/End: Complemental strand, 1648 - 1469
Alignment:
Q  296 aactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttggtgc 395  Q
    |||||||||||||||| ||||||||||||| |||||||| |||||| |||||||||| |||||||||| |||||| ||||||||||||||||| |||||     
T  1648 aactaaacaatcaaatgcatagaaataatagaacatacacaaatcaaaaccaactataagttgggtgaaatccattgcgtgttcttcagcttcctggtgt 1549  T
Q  396 cgtctatgctctgtttaggtctccaaaatcgcacacctttaatctctggttgcttttgacttttatagacacaaaattaggg 477  Q
    ||||||||||| |||||||||| | ||||||||||||  ||||||||||| |||| || |||||||||||||||||||||||    
T  1548 cgtctatgctcggtttaggtcttcgaaatcgcacacc--taatctctggtcgcttctggcttttatagacacaaaattaggg 1469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 296 - 474
Target Start/End: Complemental strand, 1378 - 1202
Alignment:
Q  296 aactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcttggtgc 395  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||||| ||| || |||| |||||||||||| | |||     
T  1378 aactaaacaatcaaatgcatagaaataatagaacatacataaatcaaaaccaactacgagttgggtgaaatctattgcgtattcttcagcttcctagtgt 1279  T
Q  396 cgtctatgctctgtttaggtctccaaaatcgcacacctttaatctctggttgcttttgacttttatagacacaaaatta 474  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||||||| |||| || ||||||||||||||||||||    
T  1278 cgtctatgctctatttaggtctccaaaatcgcacacc--taatctctggtcgcttctggcttttatagacacaaaatta 1202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 264 - 369
Target Start/End: Original strand, 468871 - 468978
Alignment:
Q  264 ggcttaattaatctaagagtttagctactcataactaa-acaatcaaatacatagaaataatataacatacataaatcagaaccaactatgagttgg-gt 361  Q
    |||||||| ||||||| || |||||||||| ||||||| ||||| ||  |||||| ||||||| |||||||||||||||| |||||||||||||||| ||    
T  468871 ggcttaatcaatctaaaagcttagctactcttaactaagacaattaacaacataggaataataaaacatacataaatcaggaccaactatgagttggtgt 468970  T
Q  362 gagatcca 369  Q
    ||||||||    
T  468971 gagatcca 468978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 7100 - 7015
Alignment:
Q  88 atttttaagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    |||| ||||||||||||||||||||| |||||| |||||||| ||||||| ||||||||||||  |||||||||||| | ||||||    
T  7100 atttctaagatcaatttatgtgattgcaagaagctagggttaatagtcatgcaaacaatcatataaaaagcaatgaacataaataa 7015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 227205 - 227124
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataaa 174  Q
    ||||||||||||||||||||| |||||| || ||||| ||||||| ||| |||||||| ||||||||||||| |||||||||    
T  227205 taagatcaatttatgtgattgtaagaagctatggttaatagtcatgcaaccaatcatatgaaaagcaatgaatacaaataaa 227124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 13464 - 13384
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||||||| |||||||| | || ||||||||    
T  13464 taagatcaatttatgtgattgtaagaagttagggttaatagtcatgcaaaaaatcatatgaaaagcagttaacacaaataa 13384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 27480 - 27400
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||||||| |||||||| | || ||||||||    
T  27480 taagatcaatttatgtgattgtaagaagttagggttaatagtcatgcaaaaaatcatatgaaaagcagttaacacaaataa 27400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 19913 - 19835
Alignment:
Q  93 taagatcaatttatgtgattgaaagaagttagggttagtagtcatacaaacaatcataagaaaagcaatgaaaacaaataa 173  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||| ||||||  ||||| ||||||||    
T  19913 taagatcaatttatgtgattgtaagaagttagggttaatagtcatgcaaacaataatatgaaaag--atgaacacaaataa 19835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 532
Target Start/End: Complemental strand, 16704 - 16649
Alignment:
Q  476 gggccgaataattgcagcccgaattttgaagagggctttttagcccggcccgtaaaa 532  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  16704 gggccgaataattgtagcccgaaatt-gaagagggctttttagcccggcccgtaaaa 16649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University