View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_low_42 (Length: 308)
Name: NF1317_low_42
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 37548456 - 37548335
Alignment:
| Q |
89 |
aagaggaaaagcatgacagcggcggagacgacggtgacgacacctccggcgagagtgcggttataaaaatcttcattgacttttgggtatgcatccaaat |
188 |
Q |
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| T |
37548456 |
aagaggaaaagcatgacagcggcggagacgacggtgacgacacctccggcgagagtgcggttataaaaatcttcattgacttttgggtatgcatccaaat |
37548357 |
T |
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| Q |
189 |
tgcggagcttgttgaagacttt |
210 |
Q |
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| T |
37548356 |
tgcggagcttgttgaagacttt |
37548335 |
T |
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