View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1317_low_46 (Length: 300)

Name: NF1317_low_46
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1317_low_46
NF1317_low_46
[»] chr7 (28 HSPs)
chr7 (52-229)||(8546679-8546856)
chr7 (49-229)||(8582664-8582844)
chr7 (49-229)||(8572591-8572771)
chr7 (49-229)||(8538805-8538985)
chr7 (49-229)||(8577290-8577470)
chr7 (17-149)||(27829346-27829478)
chr7 (52-146)||(7876838-7876932)
chr7 (16-140)||(3148339-3148463)
chr7 (15-143)||(17261359-17261487)
chr7 (17-140)||(13332160-13332283)
chr7 (52-209)||(8660248-8660405)
chr7 (17-146)||(10493005-10493134)
chr7 (16-140)||(8647669-8647793)
chr7 (16-140)||(8668433-8668557)
chr7 (16-140)||(6790378-6790502)
chr7 (12-140)||(8591362-8591490)
chr7 (49-116)||(8568839-8568906)
chr7 (52-140)||(8602738-8602826)
chr7 (126-209)||(8560773-8560856)
chr7 (52-209)||(1302315-1302472)
chr7 (58-143)||(8635506-8635591)
chr7 (15-137)||(17269067-17269189)
chr7 (17-140)||(8630197-8630320)
chr7 (52-157)||(8104069-8104174)
chr7 (49-134)||(8610665-8610750)
chr7 (16-140)||(8655317-8655441)
chr7 (17-140)||(8584546-8584669)
chr7 (52-157)||(8016286-8016391)
[»] chr2 (8 HSPs)
chr2 (17-143)||(12257921-12258047)
chr2 (16-153)||(12244400-12244537)
chr2 (13-209)||(7543242-7543438)
chr2 (15-146)||(12000300-12000431)
chr2 (17-209)||(14705432-14705624)
chr2 (13-143)||(12235763-12235893)
chr2 (17-143)||(16656607-16656733)
chr2 (16-137)||(43626288-43626409)
[»] chr8 (2 HSPs)
chr8 (49-227)||(12529869-12530047)
chr8 (17-140)||(43745793-43745913)
[»] chr4 (5 HSPs)
chr4 (8-146)||(35133414-35133552)
chr4 (16-140)||(9323074-9323198)
chr4 (16-140)||(9377553-9377677)
chr4 (16-140)||(9335046-9335169)
chr4 (16-146)||(30776085-30776215)
[»] chr5 (2 HSPs)
chr5 (17-140)||(42554197-42554320)
chr5 (16-140)||(28220915-28221039)
[»] chr1 (3 HSPs)
chr1 (16-149)||(4677541-4677674)
chr1 (49-137)||(15596060-15596148)
chr1 (13-209)||(34465189-34465385)
[»] chr6 (1 HSPs)
chr6 (52-86)||(28911318-28911352)


Alignment Details
Target: chr7 (Bit Score: 134; Significance: 9e-70; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 52 - 229
Target Start/End: Original strand, 8546679 - 8546856
Alignment:
Q  52 tgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacac 151  Q
    ||||| ||||||||||||||||||| ||||||    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8546679 tgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacac 8546778  T
Q  152 gatcgttctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattccgatcacaactccctcatatt 229  Q
    |||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  8546779 gatcgttctgctcctgccatactccaacacatgagtaagtcgtgccaaggtcaattccgatcgcaactccctcatatt 8546856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 49 - 229
Target Start/End: Original strand, 8582664 - 8582844
Alignment:
Q  49 gcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttcca 148  Q
    |||||||| |||||||||||||||||||| ||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8582664 gcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgtatgatttcca 8582763  T
Q  149 cacgatcgttctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattccgatcacaactccctcatatt 229  Q
    |||||||||| |||||| || | ||||||||||| ||||| || || |||||||||||||||||  ||| ||||| |||||    
T  8582764 cacgatcgttttgctcctgccacactccaacacatgagtaggttgtaccaaggtcaattccgattgcaaatcccttatatt 8582844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 49 - 229
Target Start/End: Original strand, 8572591 - 8572771
Alignment:
Q  49 gcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttcca 148  Q
    |||||||| |||||||||||||| ||||| ||||||   ||||| |||||||||||||| || |||||| |||||||||| |||||||| |||||||| |    
T  8572591 gcttgatttttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggagttgttctgtttccttggtcattgtgtatgatttcaa 8572690  T
Q  149 cacgatcgttctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattccgatcacaactccctcatatt 229  Q
    ||||||| || |||||| || | ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  8572691 cacgatcattttgctcctgccacactccaacacatgagtaagtcgtgccaaggtcaattccgatcgcaactccctcatatt 8572771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 49 - 229
Target Start/End: Original strand, 8538805 - 8538985
Alignment:
Q  49 gcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttcca 148  Q
    |||||||| |||||||||||||||||||| | ||||   ||| | ||| |||||||||||||||| ||||||||||||||||| ||||| ||||| ||||    
T  8538805 gcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaaccaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctcca 8538904  T
Q  149 cacgatcgttctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattccgatcacaactccctcatatt 229  Q
    |||||||||| |||||| || | ||||||||||| ||||| |||||||||||||||||||||||  || ||||||||||||    
T  8538905 cacgatcgttttgctcctgccacactccaacacatgagtaggtcgtgccaaggtcaattccgatagcagctccctcatatt 8538985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 49 - 229
Target Start/End: Original strand, 8577290 - 8577470
Alignment:
Q  49 gcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttcca 148  Q
    |||||||| ||||||||||| |||||||| ||||||   || || ||||||||||||||||| || ||| ||||||||||||||||||| || ||||| |    
T  8577290 gcttgatttttggcagcatcgccaatcaatctttgagaattggtaaaagcaacacaagaaggagtggttctgtttccttgatcattgtgtataatttcta 8577389  T
Q  149 cacgatcgttctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattccgatcacaactccctcatatt 229  Q
    |||||||||| || ||  || ||||||||||||| |||||||||||||||||||||||||| ||  |||||||||| ||||    
T  8577390 cacgatcgttttgttcatgccatactccaacacatgagtaagtcgtgccaaggtcaattccaatggcaactccctcgtatt 8577470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 27829478 - 27829346
Alignment:
Q  17 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgt 116  Q
    ||||||||| ||||||||||||||||  ||| ||||| ||||| |||||||||||||||||||| || |  |  ||||||||||||||||||||||||||    
T  27829478 taccaaagatagtgttttgagggttggaagcagcttggttcttagcagcatcaccaatcaacctctgtttgtccgtgaaagcaacacaagaaggtgttgt 27829379  T
Q  117 tttgtttccttgatcattgtgaatgatttccac 149  Q
     ||||| ||||| ||||||||||| || |||||    
T  27829378 cttgttgccttgttcattgtgaataatctccac 27829346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 7876932 - 7876838
Alignment:
Q  52 tgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttc 146  Q
    ||||| ||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||| |||| ||||| ||||||||||| |||||    
T  7876932 tgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttgttctgttgccttgttcattgtgaataatttc 7876838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 3148339 - 3148463
Alignment:
Q  16 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttg 115  Q
    |||||||| |||||||||| ||||||    |  ||||||||||| ||||||||||||| |||||||||||| | ||||||||||||| |||||||||| |    
T  3148339 ttaccaaaaacagtgttttcagggtttgtgggagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtgg 3148438  T
Q  116 ttttgtttccttgatcattgtgaat 140  Q
    ||||||| ||||| |||||||||||    
T  3148439 ttttgttgccttggtcattgtgaat 3148463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 17261359 - 17261487
Alignment:
Q  15 attaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtt 114  Q
    |||||||||||| |||||||  ||||| |  || ||||||||||| || |||||||| |||||||||| ||||||||  ||||||||| ||||||| ||     
T  17261359 attaccaaagacggtgttttctgggtttatggcagcttgattcttagcggcatcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagta 17261458  T
Q  115 gttttgtttccttgatcattgtgaatgat 143  Q
     ||||||||||||||||||||||||||||    
T  17261459 attttgtttccttgatcattgtgaatgat 17261487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 13332283 - 13332160
Alignment:
Q  17 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgt 116  Q
    ||||||||| |||||||| ||||||    || | ||||||||||||||||||||||||||| |||||||| ||  ||||||||||| |||||||||| ||    
T  13332283 taccaaagatagtgttttcagggttagtggcagattgattcttggcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtagt 13332184  T
Q  117 tttgtttccttgatcattgtgaat 140  Q
    | | ||||||||||||||||||||    
T  13332183 tctatttccttgatcattgtgaat 13332160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 209
Target Start/End: Original strand, 8660248 - 8660405
Alignment:
Q  52 tgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacac 151  Q
    |||||||| |||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||||||||| || ||||  ||||| || || |    
T  8660248 tgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttggtcgttgtagatgatctcgactc 8660347  T
Q  152 gatcgttctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattcc 209  Q
    ||| ||  | ||||||| | ||  |||||||||| || || || |||||||| |||||    
T  8660348 gattgtgattctccagccacacagcaacacacgaataggttgttccaaggtctattcc 8660405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 10493134 - 10493005
Alignment:
Q  17 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgt 116  Q
    |||||||||| ||||||| ||||||    || | ||||||||| ||||||||||| |||||||||||||| ||  ||||||||||| |||||||||| ||    
T  10493134 taccaaagacggtgttttcagggttagtggcagattgattcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagt 10493035  T
Q  117 tttgtttccttgatcattgtgaatgatttc 146  Q
    | | |||||||||||||||||||| |||||    
T  10493034 tctatttccttgatcattgtgaataatttc 10493005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 8647669 - 8647793
Alignment:
Q  16 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttg 115  Q
    |||||||||||||||||   ||||||   ||| || ||||| || || ||||||||||||||||||||||| |  |||||||||||| |||||||||| |    
T  8647669 ttaccaaagacagtgttggtagggttagaagcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtag 8647768  T
Q  116 ttttgtttccttgatcattgtgaat 140  Q
    || ||||||||||||||||||||||    
T  8647769 ttctgtttccttgatcattgtgaat 8647793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 8668433 - 8668557
Alignment:
Q  16 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttg 115  Q
    |||||||||| |||||||| ||||||   ||| | ||||||||| |||||||| |||||||||||||| || ||  ||||||||||| |||||||||||     
T  8668433 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcgccaatcaacctttgttcattgttgaaagcaacaaaagaaggtgtta 8668532  T
Q  116 ttttgtttccttgatcattgtgaat 140  Q
    ||  |||||||||||||||||||||    
T  8668533 ttcggtttccttgatcattgtgaat 8668557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 6790378 - 6790502
Alignment:
Q  16 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttg 115  Q
    ||||| |||| ||||||||| ||||||   || ||||||| ||| ||||||||||| ||||||||||| || |  |||||||||||| |||||||||| |    
T  6790378 ttaccgaagatagtgttttgcgggttggtggcagcttgatacttagcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtgg 6790477  T
Q  116 ttttgtttccttgatcattgtgaat 140  Q
    ||||||| ||||| |||||||||||    
T  6790478 ttttgttaccttggtcattgtgaat 6790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 8591362 - 8591490
Alignment:
Q  12 taaattaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggt 111  Q
    ||||||||| ||||||||||||   |||||   ||| || || || || |||||||||||||||||||||||||| ||||| ||||||||| ||||||||    
T  8591362 taaattaccgaagacagtgtttgctgggttagaagcagcctggttttttgcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggt 8591461  T
Q  112 gttgttttgtttccttgatcattgtgaat 140  Q
    ||  || | ||||||||||||||||||||    
T  8591462 gtaattctatttccttgatcattgtgaat 8591490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 8568839 - 8568906
Alignment:
Q  49 gcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgt 116  Q
    |||||||| |||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  8568839 gcttgatttttggcagcatcaccaatcaatctttgagatttagtgaaagcaacacaagaaggtgttgt 8568906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 8602738 - 8602826
Alignment:
Q  52 tgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 140  Q
    ||||| |||||||||||||| |||||||||| ||| | ||| ||||||||| ||||||| || ||| ||||||||||||||||||||||    
T  8602738 tgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaat 8602826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 8560773 - 8560856
Alignment:
Q  126 ttgatcattgtgaatgatttccacacgatcgttctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattcc 209  Q
    |||||||||||| |||||||||||||||| ||| |||||| || ||||||||||||| ||||| || || ||||||||||||||    
T  8560773 ttgatcattgtgtatgatttccacacgattgttttgctcctgccatactccaacacatgagtaggttgttccaaggtcaattcc 8560856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 209
Target Start/End: Original strand, 1302315 - 1302472
Alignment:
Q  52 tgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacac 151  Q
    |||||||| ||||||||||| |||||||||||||| |  |||||||||||| |||| |||||||||||||| ||||| || ||||  ||||| || || |    
T  1302315 tgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactc 1302414  T
Q  152 gatcgttctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattcc 209  Q
     || ||  | ||||||| | ||  |||||||||| ||||| || |||||||| |||||    
T  1302415 tattgtgattctccagccacacagcaacacacgaataagtagttccaaggtctattcc 1302472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 8635591 - 8635506
Alignment:
Q  58 ttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgat 143  Q
    ||||||||||||||||||||||||||  | | ||||||||||||||||||||||||  || |||| ||||| |||||||| |||||    
T  8635591 ttggcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaaggtgtgattctgttcccttgctcattgtggatgat 8635506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 17269067 - 17269189
Alignment:
Q  15 attaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtt 114  Q
    |||||||||||| |||||||  ||||| |  || ||||||||||| || | |||||| || ||||||| ||||||||  ||||||||| |||| || ||     
T  17269067 attaccaaagacggtgttttctgggttcatggcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaaagacggagta 17269166  T
Q  115 gttttgtttccttgatcattgtg 137  Q
    |||||||| ||||||||||||||    
T  17269167 gttttgttgccttgatcattgtg 17269189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 8630197 - 8630320
Alignment:
Q  17 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgt 116  Q
    ||||||||||||||||||| |||||||  || || |||| ||| |||||| |||||| |||||||||||| |  || ||||||||  | ||||||||  |    
T  8630197 taccaaagacagtgttttgtgggttgatggcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacgaaggaaggtgtgat 8630296  T
Q  117 tttgtttccttgatcattgtgaat 140  Q
    ||| || |||| ||||||||||||    
T  8630297 tttattgccttcatcattgtgaat 8630320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 8104069 - 8104174
Alignment:
Q  52 tgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacac 151  Q
    |||||||| ||||||||||| |||||||||| |   | ||||||||||||| |||| ||||| ||| |||| |||||||||||   |||||| || ||||    
T  8104069 tgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggtgtcgttctgttcccttgatcattagcaatgatctcaacac 8104168  T
Q  152 gatcgt 157  Q
    ||||||    
T  8104169 gatcgt 8104174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 8610665 - 8610750
Alignment:
Q  49 gcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgttttgtttccttgatcatt 134  Q
    |||||||| || ||||||||||| ||||||||||||||   || |||||||||| ||||||| || ||| |||||||||| |||||    
T  8610665 gcttgatttttagcagcatcacctatcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcatt 8610750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 8655317 - 8655441
Alignment:
Q  16 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttg 115  Q
    |||||||| ||||||||||  ||||||  ||| | ||||||||  ||  |||  ||||||||||||||||  | |||||||||||||  ||||||||| |    
T  8655317 ttaccaaatacagtgttttcggggttggtagcagattgattctcagctccattgccaatcaacctttgataatcagtgaaagcaacaacagaaggtgtag 8655416  T
Q  116 ttttgtttccttgatcattgtgaat 140  Q
    || | || |||||||||||||||||    
T  8655417 ttctattgccttgatcattgtgaat 8655441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 8584669 - 8584546
Alignment:
Q  17 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgt 116  Q
    |||||||||||||||| |  ||||||| ||| || |||| ||| |||||| |||||| |||||||||||| |  || ||||||||| | ||||||||  |    
T  8584669 taccaaagacagtgttctctgggttgatagcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacaaaggaaggtgtgat 8584570  T
Q  117 tttgtttccttgatcattgtgaat 140  Q
    ||| || |||| ||| ||||||||    
T  8584569 tttattgccttcatcgttgtgaat 8584546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 157
Target Start/End: Complemental strand, 8016391 - 8016286
Alignment:
Q  52 tgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacac 151  Q
    |||||||| ||||||||||| |||||||||| |   | ||||||||||||| |||| || || |||  ||| |||||||||||   |||||| || ||||    
T  8016391 tgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggcgtcgttcggttcccttgatcattagcaatgatctcaacac 8016292  T
Q  152 gatcgt 157  Q
    ||||||    
T  8016291 gatcgt 8016286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 12258047 - 12257921
Alignment:
Q  17 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgt 116  Q
    ||||||||||||||| |||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  12258047 taccaaagacagtgtgttgagggttggcagcagcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgt 12257948  T
Q  117 tttgtttccttgatcattgtgaatgat 143  Q
    | ||||||||||||| |||||||||||    
T  12257947 tctgtttccttgatcgttgtgaatgat 12257921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 12244537 - 12244400
Alignment:
Q  16 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttg 115  Q
    |||||||||||||||||||||| |||  |||| |||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  12244537 ttaccaaagacagtgttttgagagttagcagcagcttgatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtgttg 12244438  T
Q  116 ttttgtttccttgatcattgtgaatgatttccacacga 153  Q
    || |||| || ||||| |||||||||||||| ||||||    
T  12244437 ttctgttgccctgatcgttgtgaatgatttcaacacga 12244400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 7543242 - 7543438
Alignment:
Q  13 aaattaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtg 112  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||| |||  |||||| |||||||| |||| ||  |||||||||||| |||||||||    
T  7543242 aaattaccaaagacagtgttttgagggttggaagcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtg 7543341  T
Q  113 ttgttttgtttccttgatcattgtgaatgatttccacacgatcgttctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattcc 209  Q
    ||||| |||| ||||| || |||||||||||||| || |||| ||  || ||| || ||||| ||||||| ||||| || ||||||||||| |||||    
T  7543342 ttgttctgttgccttggtcgttgtgaatgatttcaactcgatagtgttgatcctgccatactgcaacacaagagtacgttgtgccaaggtctattcc 7543438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 12000300 - 12000431
Alignment:
Q  15 attaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgtt 114  Q
    ||||||||| ||||||||||||| |||| |||| ||||| || || |||||||||||||  |||||||||| || |||||||||||||||||||||||||    
T  12000300 attaccaaaaacagtgttttgagagttggcagcggcttggtttttagcagcatcaccaacaaacctttgattttcagtgaaagcaacacaagaaggtgtt 12000399  T
Q  115 gttttgtttccttgatcattgtgaatgatttc 146  Q
     ||||||| |||||||| ||||||||||||||    
T  12000400 attttgttgccttgatcgttgtgaatgatttc 12000431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 14705432 - 14705624
Alignment:
Q  17 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgt 116  Q
    ||||||||||||||||| |||||||| |||| ||||||||||| |||||||||||||||||||  |||| ||  |||||||||||| ||||||| |||||    
T  14705432 taccaaagacagtgtttcgagggttggcagcagcttgattcttagcagcatcaccaatcaaccgctgattttcggtgaaagcaacaaaagaaggagttgt 14705531  T
Q  117 tttgtttccttgatcattgtgaatgatttccacacgatcgttctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattcc 209  Q
    | | || |||||||| |||||||||||||| || ||||  |  || ||| || ||||| ||||||| ||||| || || |||||||| |||||    
T  14705532 tctattgccttgatcgttgtgaatgatttcaactcgataatgttgttcctgccatactgcaacacatgagtacgttgtaccaaggtctattcc 14705624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 12235763 - 12235893
Alignment:
Q  13 aaattaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtg 112  Q
    |||||||||||||| |||||||| ||||||  ||| ||||||||||| |||||||||||||||||||| |||| ||  |||||||||||| ||||||| |    
T  12235763 aaattaccaaagacggtgttttgcgggttggaagcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaagggg 12235862  T
Q  113 ttgttttgtttccttgatcattgtgaatgat 143  Q
    ||||| | || |||||||| |||||||||||    
T  12235863 ttgttctattgccttgatcgttgtgaatgat 12235893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 16656733 - 16656607
Alignment:
Q  17 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgt 116  Q
    |||||||||  |||||||| |||||  | ||  |||||||||| ||||||||||| |||||||||||||| | ||||||||||||| |||||||||||||    
T  16656733 taccaaagatggtgttttgtgggttagcggcaacttgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 16656634  T
Q  117 tttgtttccttgatcattgtgaatgat 143  Q
    | ||||||| || |||||||| |||||    
T  16656633 tctgtttccctggtcattgtgtatgat 16656607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 43626288 - 43626409
Alignment:
Q  16 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttg 115  Q
    |||||||||||||||||||  |||| |   |  ||||||  ||| ||||||||||||||||||||||| || |||||||||| |||| |||||||||| |    
T  43626288 ttaccaaagacagtgttttcggggtcggaggtagcttgacccttagcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaaggtgtag 43626387  T
Q  116 ttttgtttccttgatcattgtg 137  Q
    || |||||||||| ||||||||    
T  43626388 ttctgtttccttggtcattgtg 43626409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 49 - 227
Target Start/End: Original strand, 12529869 - 12530047
Alignment:
Q  49 gcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttcca 148  Q
    |||||||| |||||||||| ||||||||| || |||   ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12529869 gcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaattatttcca 12529968  T
Q  149 cacgatcgttctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattccgatcacaactccctcata 227  Q
    |||||||  | |||||  || ||||||||||||| |||||||| |||||||| |||||||| ||  ||||||| |||||    
T  12529969 cacgatcagtttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcctatagcaactccttcata 12530047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 43745793 - 43745913
Alignment:
Q  17 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgt 116  Q
    |||||||||  |||||||||||||||   || | ||||||||| ||||| ||||| |||||||||| ||  | ||| ||||||||| ||||||   ||||    
T  43745793 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaag---ttgt 43745889  T
Q  117 tttgtttccttgatcattgtgaat 140  Q
    |||||| |||||||||||||||||    
T  43745890 tttgttgccttgatcattgtgaat 43745913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 35133414 - 35133552
Alignment:
Q  8 aatttaaattaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaaga 107  Q
    |||| ||||||||||| |||||||||| |   ||| |||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||    
T  35133414 aattgaaattaccaaatacagtgttttcaaaattggcagcagcttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaaga 35133513  T
Q  108 aggtgttgttttgtttccttgatcattgtgaatgatttc 146  Q
    ||||||||||||||| | |||||| ||||||||||||||    
T  35133514 aggtgttgttttgttgctttgatcgttgtgaatgatttc 35133552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 9323198 - 9323074
Alignment:
Q  16 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttg 115  Q
    |||||||||| |||||||| ||||||   ||| | ||||||||| ||||||||||||||||||||||| || ||  ||||||||||| ||||||||||||    
T  9323198 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9323099  T
Q  116 ttttgtttccttgatcattgtgaat 140  Q
    ||  |||||||||||||||||||||    
T  9323098 ttcggtttccttgatcattgtgaat 9323074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 9377677 - 9377553
Alignment:
Q  16 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttg 115  Q
    |||||||||| |||||||| ||||||   ||| | ||||||||| ||||||||||||||||||||||| || ||  ||||||||||| ||||||||||||    
T  9377677 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9377578  T
Q  116 ttttgtttccttgatcattgtgaat 140  Q
    ||  |||||||||||||||||||||    
T  9377577 ttcggtttccttgatcattgtgaat 9377553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 9335169 - 9335046
Alignment:
Q  16 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttg 115  Q
    |||||||||| |||||||| ||||||   ||| | ||||||||| |||||||||||| |||||||||| || ||  ||||||||||| ||||||||||||    
T  9335169 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcacca-tcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9335071  T
Q  116 ttttgtttccttgatcattgtgaat 140  Q
    ||  |||||||||||||||||||||    
T  9335070 ttcggtttccttgatcattgtgaat 9335046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 30776085 - 30776215
Alignment:
Q  16 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttg 115  Q
    |||||||||||||||||||||||||||| ||| || || | ||| |||||| |||| | |||||||||| | | ||||||||||||| ||||||||||      
T  30776085 ttaccaaagacagtgttttgagggttgatagcagcctggtccttagcagcagcaccgaccaacctttgaccatcagtgaaagcaacaaaagaaggtgtga 30776184  T
Q  116 ttttgtttccttgatcattgtgaatgatttc 146  Q
    ||||| | |||| ||| ||||| || |||||    
T  30776185 ttttgctgccttcatcgttgtggataatttc 30776215  T

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Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 42554320 - 42554197
Alignment:
Q  17 taccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgt 116  Q
    ||||||||||||||||||| ||||||   || | ||||| ||| |||||||||||||||||||||| ||  | ||| ||||||||| |||||||||||||    
T  42554320 taccaaagacagtgttttgggggttggtggcggtttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgt 42554221  T
Q  117 tttgtttccttgatcattgtgaat 140  Q
    |||||| |||||||||||||||||    
T  42554220 tttgttgccttgatcattgtgaat 42554197  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 28220915 - 28221039
Alignment:
Q  16 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttg 115  Q
    ||||||||||| || ||||| ||||||   || | |||||| || |||||||| ||||||||||||| ||| |  |||||||||||| ||||||| ||||    
T  28220915 ttaccaaagacggtattttgggggttgttggccgtttgatttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaagaaggagttg 28221014  T
Q  116 ttttgtttccttgatcattgtgaat 140  Q
    ||||||| |||||||||||||||||    
T  28221015 ttttgttgccttgatcattgtgaat 28221039  T

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Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 4677674 - 4677541
Alignment:
Q  16 ttaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttg 115  Q
    ||||||||||||||||||| || ||||   || | ||||||||| ||||||| |||||||||||||||||| | ||| ||||||||| ||||||||||||    
T  4677674 ttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggtgttg 4677575  T
Q  116 ttttgtttccttgatcattgtgaatgatttccac 149  Q
    ||||||| ||||| ||||||| ||| || |||||    
T  4677574 ttttgttgccttgttcattgtaaataatctccac 4677541  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 15596060 - 15596148
Alignment:
Q  49 gcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 137  Q
    |||||| |||| |||||||||||||||||||||||||| |||||||||| |||| ||||||||||  || |||||||||| ||||||||    
T  15596060 gcttgactcttagcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtg 15596148  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 34465385 - 34465189
Alignment:
Q  13 aaattaccaaagacagtgttttgagggttgacagctgcttgattcttggcagcatcaccaatcaacctttgatctttagtgaaagcaacacaagaaggtg 112  Q
    ||||||||||| |||||||| || ||||||  ||| | ||||||||| ||||||| ||| ||||| |||||||| | ||| ||||||||| |||||||||    
T  34465385 aaattaccaaaaacagtgttctgtgggttggtagcagtttgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtg 34465286  T
Q  113 ttgttttgtttccttgatcattgtgaatgatttccacacgatcgttctgctccagctatactccaacacacgagtaagtcgtgccaaggtcaattcc 209  Q
    | ||| |||| ||||| ||||||| ||| || || || | |  ||  || ||| || ||||| ||||||| ||||| || ||||||||||| |||||    
T  34465285 tggttgtgttaccttggtcattgtcaataatctctactctactgtgttgttcctgccatactgcaacacatgagtaggttgtgccaaggtctattcc 34465189  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 28911318 - 28911352
Alignment:
Q  52 tgattcttggcagcatcaccaatcaacctttgatc 86  Q
    |||||||| ||||||||||||||||||||||||||    
T  28911318 tgattcttagcagcatcaccaatcaacctttgatc 28911352  T

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