View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_low_47 (Length: 300)
Name: NF1317_low_47
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_low_47 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 75 - 300
Target Start/End: Original strand, 39227786 - 39228011
Alignment:
| Q |
75 |
catcaaactcattgtaatgacctaacaaaaggtgtgtaagattagtaagatttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagaga |
174 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227786 |
catcaaactcattgtaataacctaacaaaaggtgtgtaagattagtaagatttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagaga |
39227885 |
T |
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| Q |
175 |
caaatagttaagctgcaacatgttaccatattttgaaggaatttctccatagaaaaaatttcctccaaaattcaagtacttgagtttaggtaactcagtg |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227886 |
caaatagttaagctgcaacatgttaccatattttgaaggaatttctccatagaaaaaatttcctccaaaattcaagtacttgagtttaggtaactcagtg |
39227985 |
T |
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| Q |
275 |
acaccaagagggagtgaacaattgaa |
300 |
Q |
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| T |
39227986 |
acaccaagagggagtgaacaattgaa |
39228011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 75 - 300
Target Start/End: Original strand, 25546985 - 25547210
Alignment:
| Q |
75 |
catcaaactcattgtaatgacctaacaaaaggtgtgtaagattagtaagatttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagaga |
174 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25546985 |
catcaaactcattgtaataacctaacaaaaggtgtgtaagattagtaagatttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagaga |
25547084 |
T |
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| Q |
175 |
caaatagttaagctgcaacatgttaccatattttgaaggaatttctccatagaaaaaatttcctccaaaattcaagtacttgagtttaggtaactcagtg |
274 |
Q |
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| T |
25547085 |
caaatagttaagctgcaacatgttaccatattttgaaggaatttctccatagaaaaaatttcctccaaaattcaagtacttgagtttaggtaactcagtg |
25547184 |
T |
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| Q |
275 |
acaccaagagggagtgaacaattgaa |
300 |
Q |
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| T |
25547185 |
acaccaagaggtagtgaacaattgaa |
25547210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 16733375 - 16733310
Alignment:
| Q |
124 |
atttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagagacaaatagttaagctg |
189 |
Q |
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||||||||||||| ||||| ||||| ||||||||||| || |||||||||||| | |||||||| |
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| T |
16733375 |
atttccaagctcactaggtaaaaaaccactcaaatcatttccagcaagagacaaaaaattaagctg |
16733310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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