View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1317_low_5 (Length: 599)

Name: NF1317_low_5
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1317_low_5
NF1317_low_5
[»] chr4 (17 HSPs)
chr4 (52-599)||(48205434-48205981)
chr4 (376-565)||(26998731-26998920)
chr4 (376-565)||(26984658-26984847)
chr4 (450-561)||(50077194-50077305)
chr4 (450-561)||(49106524-49106635)
chr4 (450-561)||(11652387-11652498)
chr4 (450-561)||(49108628-49108739)
chr4 (450-561)||(3461137-3461248)
chr4 (451-562)||(41013542-41013651)
chr4 (104-224)||(26982248-26982371)
chr4 (477-561)||(21503706-21503790)
chr4 (374-556)||(26982466-26982646)
chr4 (104-224)||(26999047-26999170)
chr4 (104-224)||(26984972-26985095)
chr4 (456-509)||(6431957-6432010)
chr4 (264-317)||(34493499-34493552)
chr4 (376-425)||(34496895-34496944)
[»] chr1 (20 HSPs)
chr1 (450-561)||(14674482-14674593)
chr1 (450-561)||(14679860-14679971)
chr1 (450-586)||(14654310-14654446)
chr1 (450-586)||(14664101-14664237)
chr1 (450-586)||(14708579-14708715)
chr1 (450-561)||(14669704-14669815)
chr1 (450-561)||(14683751-14683862)
chr1 (450-561)||(14706089-14706200)
chr1 (451-561)||(14681601-14681711)
chr1 (450-561)||(14652526-14652637)
chr1 (450-561)||(14662317-14662428)
chr1 (450-561)||(14716292-14716403)
chr1 (450-555)||(14667112-14667217)
chr1 (450-561)||(38175525-38175636)
chr1 (450-544)||(14676633-14676727)
chr1 (450-561)||(33988071-33988182)
chr1 (452-556)||(11872481-11872585)
chr1 (450-561)||(28366193-28366305)
chr1 (455-522)||(37422175-37422242)
chr1 (450-521)||(28698554-28698625)
[»] chr2 (22 HSPs)
chr2 (451-561)||(30733990-30734100)
chr2 (450-561)||(30732009-30732120)
chr2 (450-561)||(32918081-32918192)
chr2 (450-561)||(2841012-2841123)
chr2 (450-561)||(43850050-43850161)
chr2 (450-561)||(9008022-9008134)
chr2 (451-561)||(19232395-19232504)
chr2 (450-559)||(9026787-9026897)
chr2 (450-561)||(9020848-9020960)
chr2 (450-522)||(9032054-9032126)
chr2 (456-556)||(10763878-10763978)
chr2 (450-561)||(8973313-8973425)
chr2 (450-516)||(8979323-8979389)
chr2 (450-516)||(9023448-9023514)
chr2 (450-516)||(8984694-8984760)
chr2 (456-561)||(9030405-9030510)
chr2 (454-561)||(8992153-8992261)
chr2 (451-556)||(6471709-6471813)
chr2 (451-516)||(8988457-8988522)
chr2 (450-561)||(9016494-9016609)
chr2 (477-560)||(17225659-17225743)
chr2 (453-522)||(35701893-35701962)
[»] chr8 (12 HSPs)
chr8 (450-561)||(40054313-40054424)
chr8 (450-561)||(44878984-44879095)
chr8 (450-561)||(44880826-44880937)
chr8 (450-558)||(41841150-41841258)
chr8 (450-558)||(10944397-10944505)
chr8 (451-561)||(37679757-37679867)
chr8 (450-586)||(37682058-37682194)
chr8 (466-565)||(44582870-44582969)
chr8 (450-522)||(42220880-42220951)
chr8 (450-522)||(42092022-42092093)
chr8 (450-522)||(42555117-42555189)
chr8 (450-492)||(42872514-42872556)
[»] chr6 (7 HSPs)
chr6 (450-561)||(10791647-10791758)
chr6 (450-561)||(10795885-10795996)
chr6 (450-574)||(30521243-30521367)
chr6 (451-564)||(8875691-8875806)
chr6 (492-561)||(11333273-11333342)
chr6 (502-559)||(13136607-13136664)
chr6 (456-555)||(21216032-21216131)
[»] chr5 (6 HSPs)
chr5 (450-561)||(3643641-3643752)
chr5 (450-561)||(7524969-7525080)
chr5 (450-561)||(1716446-1716558)
chr5 (453-565)||(4103249-4103361)
chr5 (488-586)||(5350678-5350776)
chr5 (456-520)||(19261152-19261216)
[»] chr7 (1 HSPs)
chr7 (450-561)||(27134512-27134623)
[»] chr3 (1 HSPs)
chr3 (451-497)||(15758562-15758608)
[»] scaffold0549 (1 HSPs)
scaffold0549 (500-560)||(5447-5507)


Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 52 - 599
Target Start/End: Original strand, 48205434 - 48205981
Alignment:
Q  52 cttgacatcttctttagccaacatttcagtatcctttgctcgctgctgcttatttctcttcccagctcccaaagtgaagcttcttcacacttttttgcaa 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  48205434 cttgacatcttctttagccaacatttcagtatcctttgctcgctgctgcttgtttctcttcccagctcccaaagtgaagcttcttcacacttctttgcaa 48205533  T
Q  152 tagaatcattggcttctccttatcactaacatgcttctccatcaacttggagtaattcaaatattcaaccttcaaagtagcagaataagagatttctatc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48205534 tagaatcattggcttctccttatcactaacatgcttctccatcaacttggagtaattcaaatattcaaccttcaaagtagcagaataagagatttgtatc 48205633  T
Q  252 tggaaattaataaacatacaggagatcatattctttggaggattttgacgtgtttggaatcagttgttagtctcaggttcagactaatattacaaatact 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48205634 tggaaattaataaacatacaggagatcatattctttggaggattttgacgtgcttggaatcagttgttagtctcaggttcagactaatattacaaatact 48205733  T
Q  352 tcgattgctaattgagtattgtatgtcccacatcgctcagaagtatgaaaagcacgcaaagccttgttataaatttagaatttcttcacagtttagagca 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48205734 tcgattgctaattgagtattgtatgtcccacatcgctcagaagtatgaaaagcacgcaaagccttgttataaatttagaatttcttcacagtttagagca 48205833  T
Q  452 tacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattact 551  Q
    |||||||||||||||||| |||||||| |||| || ||||||||||||| | |||||||||| |||||||||||||||||| | ||||||||||||||||    
T  48205834 tacctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaatatcttatatgtggaccattggtttacatgatattaaattact 48205933  T
Q  552 tttttgagggagagtgtacactaaagtagcttgctgattgaactctcg 599  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||||||    
T  48205934 tttttgagggaaagtgtacactaaagtagcttgctgcttggactctcg 48205981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 376 - 565
Target Start/End: Complemental strand, 26998920 - 26998731
Alignment:
Q  376 gtcccacatcgctcagaagtatgaaaagcacgcaaagccttgttataaatttagaatttcttcacagtttagagcatacctttctcggccttttggctaa 475  Q
    ||||||||||| |||||||||||| ||||| |||| || ||||||||||||| |||||| ||||  |||   ||||||||||||||||||||||||||||    
T  26998920 gtcccacatcggtcagaagtatgacaagcaggcaaggctttgttataaatttggaatttgttcattgttagaagcatacctttctcggccttttggctaa 26998821  T
Q  476 gatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgagggagag 565  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||| |||| || | ||||||||||||||||||| ||||||||    
T  26998820 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattactttttttagggagag 26998731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 376 - 565
Target Start/End: Complemental strand, 26984847 - 26984658
Alignment:
Q  376 gtcccacatcgctcagaagtatgaaaagcacgcaaagccttgttataaatttagaatttcttcacagtttagagcatacctttctcggccttttggctaa 475  Q
    ||||||||||| |||||||||||| ||||| |||| || ||||||||||||| |||||| ||||  |||   ||||||||||||||||||||||||||||    
T  26984847 gtcccacatcggtcagaagtatgacaagcaggcaaggctttgttataaatttggaatttgttcattgttagaagcatacctttctcggccttttggctaa 26984748  T
Q  476 gatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgagggagag 565  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||| |||| || | ||||||||||||||||||  ||||||||    
T  26984747 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattactttttaaagggagag 26984658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 450 - 561
Target Start/End: Complemental strand, 50077305 - 50077194
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||| ||||||| ||||||||||||||    
T  50077305 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatggttcacatgatattaaatta 50077206  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  50077205 cttttttgaggg 50077194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 450 - 561
Target Start/End: Complemental strand, 49106635 - 49106524
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||| ||| | ||||||||||||    
T  49106635 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaatta 49106536  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  49106535 cttttttgaggg 49106524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 450 - 561
Target Start/End: Complemental strand, 11652498 - 11652387
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||| ||| | ||||||||||||    
T  11652498 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcacacgatattaaatta 11652399  T
Q  550 cttttttgaggg 561  Q
     |||||||||||    
T  11652398 tttttttgaggg 11652387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 450 - 561
Target Start/End: Complemental strand, 49108739 - 49108628
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||   || ||| ||| | ||||||||||||    
T  49108739 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaatta 49108640  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  49108639 cttttttgaggg 49108628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 450 - 561
Target Start/End: Complemental strand, 3461248 - 3461137
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||   || ||| ||| | ||||||||||||    
T  3461248 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaatta 3461149  T
Q  550 cttttttgaggg 561  Q
    ||||||| ||||    
T  3461148 cttttttaaggg 3461137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 451 - 562
Target Start/End: Complemental strand, 41013651 - 41013542
Alignment:
Q  451 atacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattac 550  Q
    |||| |||||||||||||||| |||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||  |||||| ||| ||||||||||     
T  41013651 atacttttctcggccttttggttaagattaagtataatatatgttcttatccgtttaatatctgatatgtggaccaagggttcacatggtattaaatta- 41013553  T
Q  551 ttttttgaggga 562  Q
     |||||||||||    
T  41013552 -tttttgaggga 41013542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 26982248 - 26982371
Alignment:
Q  104 tttctcttcccagctcccaaagtgaagcttcttcacac-ttttttgcaatagaatcattggcttctccttatcactaacatgctt-ctccatcaacttgg 201  Q
    ||||||||||||||||||||||||||||||||||||||  | ||||||||| ||||||||||  ||| |||| |||   ||||||  ||||||| |||||    
T  26982248 tttctcttcccagctcccaaagtgaagcttcttcacacaatctttgcaatacaatcattggcacctctttatgactgctatgcttgttccatcaccttgg 26982347  T
Q  202 agtaattcaa-atattcaaccttc 224  Q
    | |||||||| |||||||||||||    
T  26982348 actaattcaagatattcaaccttc 26982371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 477 - 561
Target Start/End: Original strand, 21503706 - 21503790
Alignment:
Q  477 atcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgaggg 561  Q
    ||||||| || |||||||||||||||||||||||||||||||||||  || | | ||| | |||||||||||| |||||||||||    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcacacgatattaaattatttttttgaggg 21503790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 374 - 556
Target Start/End: Original strand, 26982466 - 26982646
Alignment:
Q  374 atgtcccacatcgctcagaagtatgaaaagcacgcaaagccttgttataaatttagaatttcttc-acagtttag-agcatac-ctttctcggccttttg 470  Q
    ||||||||||||| |||||| ||||| ||||| ||||||| ||||||||||||| |||||| ||| |||   ||| |||||||  ||||||||||| |||    
T  26982466 atgtcccacatcggtcagaaatatgacaagcaggcaaagctttgttataaatttggaatttgttcgaca--ctagtagcatacattttctcggcctcttg 26982563  T
Q  471 gctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattactttttt 556  Q
    ||||||||||||| ||  |||||   |||| |||||| ||||| ||||||||| || || || | |||||||||||| | ||||||    
T  26982564 gctaagatcaagtgtagcatctg---ttattagtttagtatctaatatgtggatcaatgatttacatgatattaaatcattttttt 26982646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 26999170 - 26999047
Alignment:
Q  104 tttctcttcccagctcccaaagtgaagcttcttcacac-ttttttgcaatagaatcattggcttctccttatcactaacatgcttctcc-atcaacttgg 201  Q
    ||||||||||||||||||||||||||||||||||||||  | ||||||||| ||||| ||||  |||||||| |||   |||||| ||| |||| |||||    
T  26999170 tttctcttcccagctcccaaagtgaagcttcttcacacaatctttgcaatacaatcactggcacctccttatgactgctatgcttgtcctatcaccttgg 26999071  T
Q  202 agtaattcaa-atattcaaccttc 224  Q
    | |||||||| |||||||| ||||    
T  26999070 actaattcaagatattcaatcttc 26999047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 26985095 - 26984972
Alignment:
Q  104 tttctcttcccagctcccaaagtgaagcttcttcacac-ttttttgcaatagaatcattggcttctccttatcactaacatgcttctcc-atcaacttgg 201  Q
    |||| |||||||||||||||||||||||||||||||||  | ||||||||| ||||| ||||  |||||||| |||   |||||| ||| |||| |||||    
T  26985095 tttcacttcccagctcccaaagtgaagcttcttcacacaatctttgcaatacaatcactggcacctccttatgactgctatgcttgtcctatcaccttgg 26984996  T
Q  202 agtaattcaa-atattcaaccttc 224  Q
    | |||||||| |||||||| ||||    
T  26984995 actaattcaagatattcaatcttc 26984972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 509
Target Start/End: Complemental strand, 6432010 - 6431957
Alignment:
Q  456 tttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaat 509  Q
    ||||||||||| ||||||||||||| || || ||||| ||||||| ||||||||    
T  6432010 tttctcggcctattggctaagatcaggtttagtatctcttcttattagtttaat 6431957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 34493552 - 34493499
Alignment:
Q  264 aacatacaggagatcatattctttggaggattttgacgtgtttggaatcagttg 317  Q
    |||||||| |||||||||||| | ||| |||||||| ||||||| |||||||||    
T  34493552 aacatacaagagatcatattcatgggaagattttgatgtgtttgaaatcagttg 34493499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 425
Target Start/End: Complemental strand, 34496944 - 34496895
Alignment:
Q  376 gtcccacatcgctcagaagtatgaaaagcacgcaaagccttgttataaat 425  Q
    ||||||||||| ||| |||||||  |||||||||||||||| ||||||||    
T  34496944 gtcccacatcgttcaaaagtatgggaagcacgcaaagcctttttataaat 34496895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 9e-47; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 14674482 - 14674593
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  14674482 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaatta 14674581  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  14674582 cttttttgaggg 14674593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 14679860 - 14679971
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  14679860 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaatta 14679959  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  14679960 cttttttgaggg 14679971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 450 - 586
Target Start/End: Complemental strand, 14654446 - 14654310
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  14654446 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatta 14654347  T
Q  550 cttttttgagggagagtgtacactaaagtagcttgct 586  Q
    |||||||||||| ||| |  ||||  |||||||||||    
T  14654346 cttttttgagggggagaggccacttcagtagcttgct 14654310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 450 - 586
Target Start/End: Complemental strand, 14664237 - 14664101
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  14664237 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatta 14664138  T
Q  550 cttttttgagggagagtgtacactaaagtagcttgct 586  Q
    |||||||||||| ||| |  ||||  |||||||||||    
T  14664137 cttttttgagggggagaggccacttcagtagcttgct 14664101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 450 - 586
Target Start/End: Original strand, 14708579 - 14708715
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  14708579 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatta 14708678  T
Q  550 cttttttgagggagagtgtacactaaagtagcttgct 586  Q
    |||||||||||| ||| |  ||||  |||||||||||    
T  14708679 cttttttgagggggagaggtcactttagtagcttgct 14708715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 450 - 561
Target Start/End: Complemental strand, 14669815 - 14669704
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  14669815 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatta 14669716  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  14669715 cttttttgaggg 14669704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 14683751 - 14683862
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  14683751 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatta 14683850  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  14683851 cttttttgaggg 14683862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 14706089 - 14706200
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  14706089 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatta 14706188  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  14706189 cttttttgaggg 14706200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 451 - 561
Target Start/End: Original strand, 14681601 - 14681711
Alignment:
Q  451 atacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattac 550  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||    
T  14681601 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattac 14681700  T
Q  551 ttttttgaggg 561  Q
    |||||||||||    
T  14681701 ttttttgaggg 14681711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 14652526 - 14652637
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| || | ||||||||||||    
T  14652526 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 14652625  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  14652626 cttttttgaggg 14652637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 14662317 - 14662428
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| || | ||||||||||||    
T  14662317 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 14662416  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  14662417 cttttttgaggg 14662428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 14716292 - 14716403
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||||||| | ||||||||||||    
T  14716292 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaaatta 14716391  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  14716392 cttttttgaggg 14716403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 450 - 555
Target Start/End: Complemental strand, 14667217 - 14667112
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  14667217 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatgatattaaatta 14667118  T
Q  550 cttttt 555  Q
    ||||||    
T  14667117 cttttt 14667112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 450 - 561
Target Start/End: Complemental strand, 38175636 - 38175525
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||| ||| ||| | ||||||||||||    
T  38175636 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcacacgatattaaatta 38175537  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  38175536 cttttttgaggg 38175525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 450 - 544
Target Start/End: Original strand, 14676633 - 14676727
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatatta 544  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||    
T  14676633 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatatta 14676727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 33988071 - 33988182
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||  || ||  ||| | ||||||||||||    
T  33988071 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgagtcacacgatattaaatta 33988170  T
Q  550 cttttttgaggg 561  Q
    ||||||| ||||    
T  33988171 cttttttaaggg 33988182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 452 - 556
Target Start/End: Complemental strand, 11872585 - 11872481
Alignment:
Q  452 tacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattact 551  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||  || ||| ||| | ||||||||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcacacgatattaaattact 11872486  T
Q  552 ttttt 556  Q
    |||||    
T  11872485 ttttt 11872481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 450 - 561
Target Start/End: Complemental strand, 28366305 - 28366193
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtg-gaccattggttcatatgatattaaatt 548  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||   ||| ||| ||| | |||||||||||    
T  28366305 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaccccaatgggtcacacgatattaaatt 28366206  T
Q  549 acttttttgaggg 561  Q
    |||||||| ||||    
T  28366205 acttttttaaggg 28366193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 455 - 522
Target Start/End: Original strand, 37422175 - 37422242
Alignment:
Q  455 ctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtgg 522  Q
    ||||||||||||||||||||||||||||| ||  || |||||||||||||||||||||||||||||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgatatgtgg 37422242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 521
Target Start/End: Original strand, 28698554 - 28698625
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtg 521  Q
    ||||| |||||||| ||||||||||||||||| | || ||| | || |||||| |||||||| |||||||||    
T  28698554 catacatttctcggtcttttggctaagatcaaatgtagtatatatttttatcaatttaatatttgatatgtg 28698625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 8e-44; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 451 - 561
Target Start/End: Original strand, 30733990 - 30734100
Alignment:
Q  451 atacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattac 550  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  30733990 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaattac 30734089  T
Q  551 ttttttgaggg 561  Q
    |||||| ||||    
T  30734090 tttttttaggg 30734100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 30732009 - 30732120
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||||||| | ||||||||||||    
T  30732009 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaaatta 30732108  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  30732109 cttttttgaggg 30732120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 32918081 - 32918192
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| || | ||||||||||||    
T  32918081 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 32918180  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  32918181 cttttttgaggg 32918192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 450 - 561
Target Start/End: Complemental strand, 2841123 - 2841012
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||  || ||| ||| | ||||||||||||    
T  2841123 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggttcaatggatcacacgatattaaatta 2841024  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  2841023 cttttttgaggg 2841012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 43850050 - 43850161
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||  ||| |||||||||||| |    
T  43850050 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgagtcacatgatattaaatca 43850149  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  43850150 cttttttgaggg 43850161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 9008022 - 9008134
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatga-tattaaatt 548  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||  |||| ||| ||| |||||  | |||||||||    
T  9008022 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcataacagtattaaatt 9008121  T
Q  549 acttttttgaggg 561  Q
    |||||||||||||    
T  9008122 acttttttgaggg 9008134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 451 - 561
Target Start/End: Complemental strand, 19232504 - 19232395
Alignment:
Q  451 atacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattac 550  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||  ||||||| ||| |  ||||||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcacacaatattaaattac 19232406  T
Q  551 ttttttgaggg 561  Q
     ||||||||||    
T  19232405 ctttttgaggg 19232395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 450 - 559
Target Start/End: Original strand, 9026787 - 9026897
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatga-tattaaatt 548  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||  |||| ||| ||| ||| |  | |||||||||    
T  9026787 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcacaacagtattaaatt 9026886  T
Q  549 acttttttgag 559  Q
    |||||||||||    
T  9026887 acttttttgag 9026897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 9020848 - 9020960
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttca-tatgatattaaatt 548  Q
    ||||| |||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||| |||||| ||| ||| ||| ||   |||||||||    
T  9020848 catacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatctgagatgtggcccaatgggtcactacagtattaaatt 9020947  T
Q  549 acttttttgaggg 561  Q
    |||||||||||||    
T  9020948 acttttttgaggg 9020960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 450 - 522
Target Start/End: Original strand, 9032054 - 9032126
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtgg 522  Q
    |||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||    
T  9032054 catacctttctcggccttttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 9032126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 456 - 556
Target Start/End: Complemental strand, 10763978 - 10763878
Alignment:
Q  456 tttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttt 555  Q
    |||||||| |||||| |||||||||||| || ||| |||||||||||||||||||||||||||||||| || |||| ||||  |||||||||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatcaatggtccatacaatattaaattacttttt 10763879  T
Q  556 t 556  Q
    |    
T  10763878 t 10763878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 8973313 - 8973425
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttca-tatgatattaaatt 548  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||  |||| ||| ||| |||  |  ||||||||||    
T  8973313 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatgggtcacaacaatattaaatt 8973412  T
Q  549 acttttttgaggg 561  Q
    |||||||| ||||    
T  8973413 acttttttaaggg 8973425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 450 - 516
Target Start/End: Original strand, 8979323 - 8979389
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgat 516  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||    
T  8979323 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 8979389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 450 - 516
Target Start/End: Original strand, 9023448 - 9023514
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgat 516  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||    
T  9023448 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgat 9023514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 450 - 516
Target Start/End: Original strand, 8984694 - 8984760
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgat 516  Q
    |||||||||||||||||||||||||||||||||| || ||| ||||||||| |||||||||| ||||    
T  8984694 catacctttctcggccttttggctaagatcaagtgtagtatttgttcttattagtttaatatttgat 8984760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 456 - 561
Target Start/End: Original strand, 9030405 - 9030510
Alignment:
Q  456 tttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttt 555  Q
    ||||| |||||||||||||||||||||| || ||||||||||||||| |||||||| ||| | ||||  || ||| ||| |   ||||||||||||||||    
T  9030405 tttcttggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatttgagaagtggctcaatgggtcacacagtattaaattacttttt 9030504  T
Q  556 tgaggg 561  Q
    ||||||    
T  9030505 tgaggg 9030510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 454 - 561
Target Start/End: Original strand, 8992153 - 8992261
Alignment:
Q  454 cctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttca-tatgatattaaattactt 552  Q
    |||||||| | ||||||||||||||||||| || ||| ||||||||| |||| ||||||||||  |||| ||| ||| |||  || ||||||||||||||    
T  8992153 cctttctcagtcttttggctaagatcaagtgtagtatatgttcttatgagttcaatatctgattagtggcccaatgggtcacaataatattaaattactt 8992252  T
Q  553 ttttgaggg 561  Q
    |||||||||    
T  8992253 ttttgaggg 8992261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 451 - 556
Target Start/End: Complemental strand, 6471813 - 6471709
Alignment:
Q  451 atacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattac 550  Q
    |||||||| ||| ||||||||||||||| |||| || ||| ||||||||| |||||||||||||||||  || | | ||| ||| |||||||||| ||||    
T  6471813 atacctttttcgaccttttggctaagat-aagtgtagtatatgttcttattagtttaatatctgatatacggtctaatggatcacatgatattaagttac 6471715  T
Q  551 tttttt 556  Q
    ||||||    
T  6471714 tttttt 6471709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 451 - 516
Target Start/End: Original strand, 8988457 - 8988522
Alignment:
Q  451 atacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgat 516  Q
    ||||| |||| ||||||||||| |||||||||| || ||| |||||||||||||||||||| ||||    
T  8988457 ataccattcttggccttttggcgaagatcaagtgtagtatttgttcttatcagtttaatatttgat 8988522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 9016494 - 9016609
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatc---agtttaatatctgatatgtggaccattggttcatatga-tattaa 545  Q
    ||||||||  ||| |||||||||||||||||| | || ||||||||||||||   |||||||||||||||  |||| ||| ||| ||| |  | ||||||    
T  9016494 cataccttattcgaccttttggctaagatcaaatgtagtatctgttcttatcagtagtttaatatctgattagtggcccaatgggtcacaacagtattaa 9016593  T
Q  546 attacttttttgaggg 561  Q
    ||||||||||||||||    
T  9016594 attacttttttgaggg 9016609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 477 - 560
Target Start/End: Complemental strand, 17225743 - 17225659
Alignment:
Q  477 atcaagtatactatctgttctt-atcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgagg 560  Q
    ||||||| || |||||||| || ||| |||||||| ||||||| ||| ||| ||  ||||| |||||||||||||||||||||||    
T  17225743 atcaagtgtagtatctgttttttatcggtttaataactgatatctggtccaatgaatcatacgatattaaattacttttttgagg 17225659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 522
Target Start/End: Original strand, 35701893 - 35701962
Alignment:
Q  453 acctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtgg 522  Q
    |||||||||  | |||||||||||||||||| |  ||| |||| |||| |||||||||| ||||||||||    
T  35701893 acctttctcaactttttggctaagatcaagtgtggtatttgtttttattagtttaatatttgatatgtgg 35701962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 5e-42; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 40054313 - 40054424
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||| ||||| ||||||||||||    
T  40054313 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcatacgatattaaatta 40054412  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  40054413 cttttttgaggg 40054424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 44878984 - 44879095
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||  || ||| ||| ||||||||||||||    
T  44878984 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaaatta 44879083  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  44879084 cttttttgaggg 44879095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 450 - 561
Target Start/End: Complemental strand, 44880937 - 44880826
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||  || ||| ||| ||||||||||||||    
T  44880937 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaaatta 44880838  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  44880837 cttttttgaggg 44880826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 450 - 558
Target Start/End: Complemental strand, 41841258 - 41841150
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||| ||| | ||||||||||||    
T  41841258 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatgggtcacacgatattaaatta 41841159  T
Q  550 cttttttga 558  Q
    |||||||||    
T  41841158 cttttttga 41841150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 450 - 558
Target Start/End: Complemental strand, 10944505 - 10944397
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||| | ||||||| | ||||||||||||    
T  10944505 catacctttctcgaccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcacacgatattaaatta 10944406  T
Q  550 cttttttga 558  Q
    |||||||||    
T  10944405 cttttttga 10944397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 451 - 561
Target Start/End: Original strand, 37679757 - 37679867
Alignment:
Q  451 atacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattac 550  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |||| ||  ||||||||||||      
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacttgatattaaattta 37679856  T
Q  551 ttttttgaggg 561  Q
    ||| |||||||    
T  37679857 tttattgaggg 37679867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 450 - 586
Target Start/End: Original strand, 37682058 - 37682194
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    ||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |||| || | |||||||||||     
T  37682058 catacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaattt 37682157  T
Q  550 cttttttgagggagagtgtacactaaagtagcttgct 586  Q
     |||||| |||  ||| || ||| ||| |||||||||    
T  37682158 gtttttttaggatgagagtccaccaaaatagcttgct 37682194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 466 - 565
Target Start/End: Original strand, 44582870 - 44582969
Alignment:
Q  466 ttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgagggagag 565  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||| |  || ||| |  |||||||||||||||||||||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtagctcaatggattctatgatattaaattacttttttgagggagag 44582969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 450 - 522
Target Start/End: Complemental strand, 42220951 - 42220880
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtgg 522  Q
    ||||| ||| |||| ||||||||||||||||||| || ||||| ||||||| |||||||||||||||||||||    
T  42220951 catacatttttcggtcttttggctaagatcaagtgtagtatct-ttcttattagtttaatatctgatatgtgg 42220880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 522
Target Start/End: Original strand, 42092022 - 42092093
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtgg 522  Q
    |||||||||||  |||||||| |||| || |||| || ||| |||||||||||||||||||||||||||||||    
T  42092022 catacctttctttgccttttg-ctaaaattaagtgtaatatttgttcttatcagtttaatatctgatatgtgg 42092093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 522
Target Start/End: Complemental strand, 42555189 - 42555117
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtgg 522  Q
    ||||||||||| |  |||||||||||||||||||  |  ||||||| ||||||||||||||| ||||||||||    
T  42555189 catacctttcttgatcttttggctaagatcaagtgcagaatctgtttttatcagtttaatatttgatatgtgg 42555117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 492
Target Start/End: Complemental strand, 42872556 - 42872514
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatct 492  Q
    ||||||||||||||||||||||||||||| |||| || |||||    
T  42872556 catacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 450 - 561
Target Start/End: Complemental strand, 10791758 - 10791647
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||| ||| ||| ||||||||||||||    
T  10791758 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatgatattaaatta 10791659  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  10791658 cttttttgaggg 10791647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 450 - 561
Target Start/End: Complemental strand, 10795996 - 10795885
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||| ||| ||| | ||||||||||||    
T  10795996 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgacccaatgggtcacacgatattaaatta 10795897  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  10795896 cttttttgaggg 10795885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 450 - 574
Target Start/End: Original strand, 30521243 - 30521367
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    ||||||||||||| |||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| |  ||| | |||||| ||||     
T  30521243 catacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccatcgcctcacacgatattcaattt 30521342  T
Q  550 cttttttgagggagagtgtacacta 574  Q
     ||||||||||| ||| || |||||    
T  30521343 attttttgagggggagagtccacta 30521367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 451 - 564
Target Start/End: Original strand, 8875691 - 8875806
Alignment:
Q  451 atacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaat--t 548  Q
    |||| |||| ||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||| | | | | | ||||||||||  |    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgatatgtggtccaatagattacacgatattaaattat 8875790  T
Q  549 acttttttgagggaga 564  Q
    ||||||||||||||||    
T  8875791 acttttttgagggaga 8875806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 492 - 561
Target Start/End: Original strand, 11333273 - 11333342
Alignment:
Q  492 tgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgaggg 561  Q
    ||||||||||||||||||||||||||||||| |||  || ||| | ||||||||||||||||||||||||    
T  11333273 tgttcttatcagtttaatatctgatatgtggtccaacggatcacacgatattaaattacttttttgaggg 11333342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 502 - 559
Target Start/End: Original strand, 13136607 - 13136664
Alignment:
Q  502 agtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 559  Q
    ||||||||||||||||||||||||| |||| || | ||||||||||||||||||||||    
T  13136607 agtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgag 13136664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 456 - 555
Target Start/End: Original strand, 21216032 - 21216131
Alignment:
Q  456 tttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttt 555  Q
    ||||| || |||||| ||||||||| |||||  |||| |||||||||||||||||||| ||||||||  || ||  ||| |  |||||||||||||||||    
T  21216032 tttcttggtcttttgactaagatcatgtatagcatctattcttatcagtttaatatcttatatgtggctcaatgaatcacaaaatattaaattacttttt 21216131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 3643641 - 3643752
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||||||    
T  3643641 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccattgggtcacacgatattaaatta 3643740  T
Q  550 cttttttgaggg 561  Q
    ||||||| ||||    
T  3643741 cttttttaaggg 3643752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 7524969 - 7525080
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||| ||| ||| | ||||||||||||    
T  7524969 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcacacgatattaaatta 7525068  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  7525069 cttttttgaggg 7525080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 450 - 561
Target Start/End: Complemental strand, 1716558 - 1716446
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggacc-attggttcatatgatattaaatt 548  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || | ||| ||| | |||||||||||    
T  1716558 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaaatgggtcacacgatattaaatt 1716459  T
Q  549 acttttttgaggg 561  Q
    |||||||| ||||    
T  1716458 acttttttaaggg 1716446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 453 - 565
Target Start/End: Original strand, 4103249 - 4103361
Alignment:
Q  453 acctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattactt 552  Q
    ||||||||| || |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| ||| | || || | ||||||||||| |||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatagtccacacgatattaaattgctt 4103348  T
Q  553 ttttgagggagag 565  Q
    |||| ||||||||    
T  4103349 tttttagggagag 4103361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 488 - 586
Target Start/End: Original strand, 5350678 - 5350776
Alignment:
Q  488 tatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgagggagagtgtacactaaagtagcttgct 586  Q
    ||||| || ||||||||||||||||||||||||||  || |||| || | |||||||||||  ||| |||||||  || || ||| |||||||||||||    
T  5350678 tatctattgttatcagtttaatatctgatatgtgggacaatggtccacacgatattaaatttatttcttgaggggtagagtccaccaaagtagcttgct 5350776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 520
Target Start/End: Complemental strand, 19261216 - 19261152
Alignment:
Q  456 tttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgt 520  Q
    |||||| ||||||||  ||||||||||| || ||| |||||||||| ||| ||||||||||||||    
T  19261216 tttctcagccttttgattaagatcaagtgtaatatatgttcttatccgttaaatatctgatatgt 19261152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 27134512 - 27134623
Alignment:
Q  450 catacctttctcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaatta 549  Q
    ||||||||| ||||||||||  |||||||||| | || |||||||||||||  |||||||||||||||||||| | | ||  ||| | ||||||||||||    
T  27134512 catacctttttcggccttttcactaagatcaaatctagtatctgttcttattggtttaatatctgatatgtggtctaatgagtcaaacgatattaaatta 27134611  T
Q  550 cttttttgaggg 561  Q
    ||||||||||||    
T  27134612 cttttttgaggg 27134623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 497
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  451 atacctttctcggccttttggctaagatcaagtatactatctgttct 497  Q
    ||||||||||| ||||||||||||||||||||| || ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 560
Target Start/End: Original strand, 5447 - 5507
Alignment:
Q  500 tcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgagg 560  Q
    ||||||||||||||||||| ||| ||| | ||||| | |||||||||||  ||||||||||    
T  5447 tcagtttaatatctgatatatgggccaattgttcacacgatattaaatttattttttgagg 5507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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