View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_low_50 (Length: 286)
Name: NF1317_low_50
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 50 - 259
Target Start/End: Original strand, 41839796 - 41840005
Alignment:
| Q |
50 |
tcaagttgcttatgagataatggagaagaaatcagcagatgtgaagcaagggatgttttccaaaagaaatcttcttcctcgcctgattcttcgaacaact |
149 |
Q |
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| T |
41839796 |
tcaagttgcttatgagataatggagaagaaatcagcagatgtgaagcaagggatgttttccaaaagaaatcttcttcctcgcctgattcttcgaacaact |
41839895 |
T |
|
| Q |
150 |
tacatgattttctgtggatttctggcagccatgttgccgttttttggagacatcaatggcgtggttggtgctgttggtttcattcctctggattttgtcc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41839896 |
tacatgattttctgtggatttctggcagccatgttgccgttttttggagacatcaatggcgtggttggtgctgttggtttcattcctctggattttgtcc |
41839995 |
T |
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| Q |
250 |
tgcctatgat |
259 |
Q |
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|||||||||| |
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| T |
41839996 |
tgcctatgat |
41840005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 41833609 - 41833744
Alignment:
| Q |
50 |
tcaagttgcttatgagataatggagaagaaatcagcagatgtgaagcaagggatgttttccaaaagaaatcttcttcctcgcctgattcttcgaacaact |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41833609 |
tcaagttgcttatgagataatggagaagaaatcagcagatgtgaagcaagggatgttttccaaaagaaatcttcttcctcgcctgattcttcgaacaact |
41833708 |
T |
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| Q |
150 |
tacatgattttctgtggatttctggcagccatgttg |
185 |
Q |
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| T |
41833709 |
tacatgattttctgtggatttctggcagccatgttg |
41833744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 50 - 259
Target Start/End: Original strand, 11651758 - 11651967
Alignment:
| Q |
50 |
tcaagttgcttatgagataatggagaagaaatcagcagatgtgaagcaagggatgttttccaaaagaaatcttcttcctcgcctgattcttcgaacaact |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11651758 |
tcaagttgcttatgagataatggagaagaaatcagcagatgtgaagcaagggatgttttccaaaagaaatcttcttcctcgcctgattcttcgaacaact |
11651857 |
T |
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| Q |
150 |
tacatgattttctgtggatttctggcagccatgttgccgttttttggagacatcaatggcgtggttggtgctgttggtttcattcctctggattttgtcc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11651858 |
tacatgattttctgtggatttctggcagccatgttgccgttttttggagacatcaatggcgtggttggtgctgttggtttcattcctctggattttgtcc |
11651957 |
T |
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| Q |
250 |
tgcctatgat |
259 |
Q |
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|||||||||| |
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| T |
11651958 |
tgcctatgat |
11651967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 73 - 259
Target Start/End: Original strand, 2841450 - 2841637
Alignment:
| Q |
73 |
agaagaaatcagcagatgtgaagcaagggatgttttccaaaagaaatcttcttcctcgcctgattcttcgaacaacttacatgattttctgtggatttct |
172 |
Q |
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|||||| ||| ||||||||||||| || ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||| |
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| T |
2841450 |
agaagagatcggcagatgtgaagccagagatgttttccaaaagaaatcttcttcctcgcttgactcttcgaacaatttacatgtttttctgtggatttct |
2841549 |
T |
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| Q |
173 |
ggcagccatgttgccg-ttttttggagacatcaatggcgtggttggtgctgttggtttcattcctctggattttgtcctgcctatgat |
259 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2841550 |
ggcagccatgttgccgtttttttggagacatcaatggcatggttggtgctgttggtttcattcctctggattttgttctgcctatgat |
2841637 |
T |
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