View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_low_52 (Length: 276)
Name: NF1317_low_52
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 29 - 272
Target Start/End: Original strand, 39895359 - 39895602
Alignment:
| Q |
29 |
agggatgaaaaaccatgttgcaatttccaccctaaacaagtagttgttggtgtatgtcctttatgcttgaatgaaaggcttcttctattggctgcaaaac |
128 |
Q |
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| T |
39895359 |
agggatgaaaaaccatgttgcaatttccaccctaaacaagtagttgttggtgtatgccctttatgcttgaatgaaaggcttcttctattggcagcaaaac |
39895458 |
T |
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| Q |
129 |
aaggtcggcgccaccatcataatcaccgttcttcttcatcttcttcctccaaaaaagttgctagttcacaaaagcttcaaagttccgtacacacaaagcc |
228 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39895459 |
aaggtcggcgccaccatcataaccaccgttcttcttcatcttcttcctccaaaaaagttgctagttcacaaaagcttcaaagttccgtacacacaaagcc |
39895558 |
T |
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| Q |
229 |
acccaattcttcttctattcataagatctttgcctttgcttctc |
272 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
39895559 |
acccaattcttcttctattcataagatctttgcttttggttctc |
39895602 |
T |
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