View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_low_55 (Length: 273)
Name: NF1317_low_55
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 10387225 - 10387490
Alignment:
| Q |
1 |
catgtaactcagcagaaagttgcatctgcctaagtttagcggccctctcttcttctgaaagcttaggagccacatttctccgcttatagtgtgattcacg |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10387225 |
catgtaactcagcagcaagttgcatctgcctaagtttagcggccctctcttcttctgaaagcttaggagccacatttctccgcttatagtgtgactcacg |
10387324 |
T |
|
| Q |
101 |
tccgagtgaattagcggaagatctagtagagcttggttctcgaaagctcccattcccccttttagagacatcaaaattggactgaccttctggagcatat |
200 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10387325 |
tccgagtgaattagcagaagatctagtagagcttggttctcgaaagctcccattcccccttttagagacatcaaaattggactgaccttctggagcatat |
10387424 |
T |
|
| Q |
201 |
cttcctgactttggcttattatcatttctgtcatcaacatcttctttatagtcttttcctttgctt |
266 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10387425 |
cttcctgactttggcttattatcatttctgttatcaacatcttctttatagtcttttcctttgctt |
10387490 |
T |
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