View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1317_low_56 (Length: 273)

Name: NF1317_low_56
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1317_low_56
NF1317_low_56
[»] chr8 (26 HSPs)
chr8 (34-273)||(38874632-38874871)
chr8 (41-109)||(10114482-10114550)
chr8 (41-109)||(27028824-27028892)
chr8 (35-112)||(28769345-28769422)
chr8 (54-110)||(35220731-35220787)
chr8 (50-109)||(43717946-43718005)
chr8 (82-204)||(7008633-7008753)
chr8 (35-112)||(11795079-11795156)
chr8 (35-74)||(7514565-7514604)
chr8 (50-109)||(30251463-30251522)
chr8 (35-78)||(35869824-35869867)
chr8 (35-109)||(8062511-8062585)
chr8 (220-266)||(14926893-14926939)
chr8 (58-116)||(21653091-21653149)
chr8 (220-258)||(42215219-42215257)
chr8 (41-109)||(2482858-2482924)
chr8 (219-264)||(9700113-9700158)
chr8 (35-100)||(9956832-9956897)
chr8 (35-112)||(12361179-12361256)
chr8 (39-112)||(30013209-30013282)
chr8 (54-107)||(44236834-44236887)
chr8 (44-140)||(6966881-6966976)
chr8 (36-68)||(31705073-31705105)
chr8 (159-203)||(31884856-31884900)
chr8 (232-268)||(34769427-34769463)
chr8 (220-268)||(35534522-35534570)
[»] chr5 (37 HSPs)
chr5 (35-109)||(39105451-39105525)
chr5 (39-188)||(32172644-32172792)
chr5 (50-109)||(4014433-4014492)
chr5 (35-103)||(28776980-28777048)
chr5 (35-109)||(2568645-2568719)
chr5 (35-109)||(9202757-9202831)
chr5 (35-93)||(12425558-12425616)
chr5 (54-140)||(41052874-41052959)
chr5 (44-109)||(7984965-7985030)
chr5 (219-264)||(9174928-9174973)
chr5 (35-108)||(37588370-37588443)
chr5 (35-95)||(7319393-7319453)
chr5 (41-109)||(41981874-41981942)
chr5 (82-201)||(11297114-11297232)
chr5 (205-252)||(31723903-31723950)
chr5 (145-200)||(36326104-36326159)
chr5 (219-249)||(1899265-1899295)
chr5 (42-84)||(4620187-4620229)
chr5 (35-109)||(6587116-6587190)
chr5 (54-112)||(7319014-7319072)
chr5 (162-200)||(9174929-9174967)
chr5 (55-109)||(10639960-10640014)
chr5 (50-100)||(24030419-24030469)
chr5 (232-270)||(34736434-34736472)
chr5 (219-264)||(8651265-8651310)
chr5 (102-187)||(11457152-11457236)
chr5 (35-76)||(12975334-12975375)
chr5 (161-202)||(16937800-16937841)
chr5 (35-116)||(36796708-36796789)
chr5 (35-108)||(37526209-37526282)
chr5 (41-106)||(40119880-40119945)
chr5 (35-112)||(41957457-41957534)
chr5 (41-109)||(1619083-1619150)
chr5 (159-203)||(6938649-6938693)
chr5 (220-264)||(7705911-7705955)
chr5 (41-89)||(32942611-32942659)
chr5 (50-118)||(42582914-42582982)
[»] chr3 (41 HSPs)
chr3 (54-187)||(37273140-37273272)
chr3 (57-204)||(45541580-45541726)
chr3 (36-200)||(2923466-2923629)
chr3 (125-201)||(25459548-25459624)
chr3 (55-123)||(33972729-33972797)
chr3 (41-108)||(44747418-44747485)
chr3 (42-105)||(50600191-50600254)
chr3 (57-107)||(466202-466252)
chr3 (43-112)||(2719463-2719532)
chr3 (62-203)||(4534291-4534431)
chr3 (35-88)||(33405197-33405250)
chr3 (162-203)||(51929854-51929895)
chr3 (50-106)||(21367669-21367725)
chr3 (35-111)||(34254815-34254891)
chr3 (35-78)||(2201115-2201158)
chr3 (57-112)||(16790384-16790439)
chr3 (50-200)||(41633362-41633509)
chr3 (50-120)||(2128256-2128326)
chr3 (35-93)||(5436246-5436304)
chr3 (43-109)||(28622008-28622074)
chr3 (51-93)||(32582747-32582789)
chr3 (35-109)||(36783343-36783417)
chr3 (220-262)||(50760704-50760746)
chr3 (35-109)||(52618990-52619064)
chr3 (220-257)||(584159-584196)
chr3 (229-258)||(9832674-9832703)
chr3 (35-100)||(14548739-14548804)
chr3 (35-76)||(21865563-21865604)
chr3 (35-111)||(25182994-25183071)
chr3 (41-106)||(30443886-30443951)
chr3 (219-256)||(48364834-48364871)
chr3 (219-256)||(48807811-48807848)
chr3 (162-203)||(53762310-53762351)
chr3 (55-111)||(901931-901987)
chr3 (124-200)||(3775770-3775846)
chr3 (35-95)||(14145899-14145959)
chr3 (41-109)||(20880469-20880537)
chr3 (41-93)||(39602235-39602287)
chr3 (232-264)||(43046789-43046821)
chr3 (146-210)||(43948751-43948815)
chr3 (219-263)||(51929853-51929897)
[»] chr7 (30 HSPs)
chr7 (35-109)||(40688995-40689069)
chr7 (35-105)||(47177623-47177693)
chr7 (50-107)||(20526448-20526505)
chr7 (35-124)||(38010701-38010790)
chr7 (35-109)||(47510116-47510190)
chr7 (35-99)||(6263382-6263446)
chr7 (35-95)||(27548250-27548310)
chr7 (41-100)||(12110353-12110412)
chr7 (159-202)||(24363517-24363560)
chr7 (50-109)||(48470046-48470105)
chr7 (35-164)||(48157075-48157203)
chr7 (206-266)||(23214954-23215014)
chr7 (41-93)||(44821952-44822004)
chr7 (41-108)||(752962-753029)
chr7 (50-93)||(43648242-43648285)
chr7 (41-100)||(45790443-45790502)
chr7 (50-112)||(6601369-6601431)
chr7 (50-108)||(33128755-33128813)
chr7 (36-106)||(39505944-39506014)
chr7 (44-93)||(33678776-33678825)
chr7 (220-265)||(34083520-34083565)
chr7 (41-106)||(46280284-46280349)
chr7 (222-258)||(5010390-5010426)
chr7 (38-70)||(28340892-28340924)
chr7 (35-107)||(30535550-30535622)
chr7 (157-197)||(32410648-32410688)
chr7 (57-109)||(36517588-36517640)
chr7 (232-264)||(40371567-40371599)
chr7 (222-258)||(40598404-40598440)
chr7 (50-90)||(47559629-47559669)
[»] chr2 (47 HSPs)
chr2 (35-109)||(18066115-18066189)
chr2 (35-187)||(15377752-15377903)
chr2 (35-112)||(18179246-18179323)
chr2 (35-124)||(22681179-22681268)
chr2 (35-200)||(11513885-11514047)
chr2 (35-91)||(8017421-8017477)
chr2 (220-267)||(2416426-2416473)
chr2 (145-203)||(15370239-15370297)
chr2 (87-201)||(32821848-32821961)
chr2 (43-96)||(6167305-6167358)
chr2 (36-69)||(29643465-29643498)
chr2 (35-108)||(39983329-39983402)
chr2 (43-100)||(42457943-42458000)
chr2 (50-102)||(26143656-26143708)
chr2 (156-204)||(33503105-33503153)
chr2 (41-109)||(40279190-40279258)
chr2 (54-109)||(3611232-3611287)
chr2 (37-112)||(6993730-6993805)
chr2 (50-109)||(9174817-9174876)
chr2 (223-258)||(9395245-9395280)
chr2 (145-188)||(14302918-14302961)
chr2 (35-70)||(25800816-25800851)
chr2 (41-76)||(33931612-33931647)
chr2 (41-100)||(42621393-42621452)
chr2 (232-266)||(6772444-6772478)
chr2 (159-201)||(10285970-10286012)
chr2 (35-109)||(26626860-26626934)
chr2 (35-109)||(29316784-29316858)
chr2 (54-108)||(33319822-33319876)
chr2 (220-266)||(35378443-35378489)
chr2 (220-258)||(37448696-37448734)
chr2 (50-112)||(40279409-40279471)
chr2 (35-100)||(680490-680555)
chr2 (44-109)||(1893290-1893355)
chr2 (35-108)||(9395117-9395190)
chr2 (41-106)||(12464485-12464550)
chr2 (35-76)||(16353848-16353889)
chr2 (50-107)||(16398116-16398173)
chr2 (57-138)||(34652017-34652097)
chr2 (52-109)||(35378541-35378598)
chr2 (35-96)||(41875675-41875736)
chr2 (41-109)||(750664-750731)
chr2 (35-111)||(938517-938593)
chr2 (219-259)||(3458707-3458747)
chr2 (159-203)||(40759270-40759314)
chr2 (35-67)||(42592326-42592358)
chr2 (163-203)||(42868397-42868437)
[»] chr1 (48 HSPs)
chr1 (34-112)||(4622079-4622157)
chr1 (41-109)||(7137007-7137075)
chr1 (35-109)||(9656637-9656711)
chr1 (36-109)||(28482242-28482315)
chr1 (41-109)||(27820346-27820414)
chr1 (41-109)||(34290229-34290297)
chr1 (50-110)||(35179141-35179201)
chr1 (41-109)||(45975683-45975751)
chr1 (35-202)||(6231733-6231899)
chr1 (36-187)||(31517672-31517822)
chr1 (220-258)||(42556525-42556563)
chr1 (55-109)||(51695504-51695558)
chr1 (50-95)||(4576807-4576852)
chr1 (35-116)||(7218076-7218157)
chr1 (50-107)||(39603842-39603899)
chr1 (145-200)||(12763419-12763475)
chr1 (36-112)||(27963376-27963452)
chr1 (35-112)||(28689458-28689537)
chr1 (40-100)||(38867849-38867909)
chr1 (220-267)||(11695975-11696021)
chr1 (36-107)||(25944420-25944491)
chr1 (57-100)||(38189773-38189816)
chr1 (37-112)||(39270431-39270506)
chr1 (42-112)||(2294905-2294975)
chr1 (124-198)||(4549462-4549536)
chr1 (53-107)||(16144981-16145035)
chr1 (35-109)||(16322836-16322910)
chr1 (222-260)||(28467548-28467586)
chr1 (161-203)||(37631475-37631517)
chr1 (54-108)||(41195203-41195257)
chr1 (35-105)||(49888754-49888824)
chr1 (41-198)||(2777885-2778040)
chr1 (36-109)||(6774976-6775048)
chr1 (57-106)||(7941615-7941664)
chr1 (219-256)||(24279861-24279898)
chr1 (35-76)||(25006076-25006117)
chr1 (39-100)||(27887136-27887197)
chr1 (35-112)||(30371135-30371212)
chr1 (220-256)||(1662686-1662722)
chr1 (161-201)||(11695974-11696014)
chr1 (35-71)||(15361700-15361736)
chr1 (35-203)||(17420190-17420356)
chr1 (41-109)||(24915060-24915128)
chr1 (35-107)||(25005808-25005880)
chr1 (220-252)||(29723602-29723634)
chr1 (41-109)||(42174848-42174916)
chr1 (35-95)||(44422686-44422746)
chr1 (35-71)||(48830123-48830159)
[»] chr6 (27 HSPs)
chr6 (35-112)||(4246397-4246474)
chr6 (50-201)||(8010359-8010509)
chr6 (34-200)||(7148652-7148817)
chr6 (227-264)||(29249513-29249550)
chr6 (133-206)||(31461756-31461829)
chr6 (161-204)||(103542-103585)
chr6 (50-109)||(34430470-34430529)
chr6 (50-100)||(835267-835317)
chr6 (57-187)||(2455819-2455948)
chr6 (35-109)||(24476589-24476663)
chr6 (43-109)||(31624085-31624151)
chr6 (35-100)||(9093574-9093639)
chr6 (87-120)||(27924601-27924634)
chr6 (43-120)||(28641747-28641824)
chr6 (35-100)||(31671092-31671157)
chr6 (161-201)||(835179-835219)
chr6 (41-109)||(2735062-2735130)
chr6 (41-109)||(3201956-3202024)
chr6 (57-141)||(4420652-4420735)
chr6 (220-256)||(5977042-5977078)
chr6 (41-93)||(9109276-9109328)
chr6 (41-77)||(9604842-9604878)
chr6 (159-203)||(12111077-12111121)
chr6 (220-252)||(12111080-12111112)
chr6 (41-105)||(24982698-24982762)
chr6 (220-252)||(31338090-31338122)
chr6 (61-109)||(31813174-31813222)
[»] chr4 (36 HSPs)
chr4 (41-109)||(17822874-17822942)
chr4 (35-199)||(23459615-23459777)
chr4 (41-100)||(42685417-42685476)
chr4 (54-187)||(28615529-28615662)
chr4 (42-97)||(942129-942184)
chr4 (35-124)||(9841053-9841141)
chr4 (41-100)||(16199999-16200058)
chr4 (221-264)||(44638139-44638182)
chr4 (35-108)||(20031736-20031810)
chr4 (35-112)||(2996560-2996637)
chr4 (50-107)||(55302251-55302308)
chr4 (56-100)||(825508-825552)
chr4 (35-199)||(44319936-44320099)
chr4 (232-267)||(10205851-10205886)
chr4 (157-200)||(22796763-22796806)
chr4 (35-78)||(24444025-24444068)
chr4 (132-187)||(25487489-25487544)
chr4 (82-201)||(53315360-53315478)
chr4 (35-109)||(1706609-1706683)
chr4 (35-113)||(27043835-27043913)
chr4 (35-93)||(35571656-35571714)
chr4 (34-72)||(52754586-52754624)
chr4 (35-85)||(53626763-53626813)
chr4 (159-200)||(10172172-10172213)
chr4 (220-249)||(34430626-34430655)
chr4 (35-108)||(36048520-36048593)
chr4 (35-112)||(40174550-40174627)
chr4 (35-100)||(51630098-51630163)
chr4 (50-95)||(52315220-52315265)
chr4 (162-198)||(3637299-3637335)
chr4 (42-110)||(11802528-11802596)
chr4 (35-95)||(29778782-29778842)
chr4 (39-91)||(32421096-32421148)
chr4 (161-201)||(35571549-35571589)
chr4 (35-67)||(36460573-36460605)
chr4 (41-93)||(49202638-49202690)
[»] scaffold0221 (1 HSPs)
scaffold0221 (50-107)||(22233-22290)
[»] scaffold0024 (1 HSPs)
scaffold0024 (50-99)||(21304-21353)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 34 - 273
Target Start/End: Original strand, 38874632 - 38874871
Alignment:
Q  34 cttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctat 133  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38874632 cttttcatataagctctaagctgttttcataagctattttggagaacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctat 38874731  T
Q  134 aagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacaggcttagtctcattggtctttatgctagtaaat 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38874732 aagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacaggcttagtctcattggtctttatgctagtaaat 38874831  T
Q  234 aagctcaaataagtcaatctaaacatgccctaattggtta 273  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38874832 aagctcaaataagtcaatctaaacatgccctaattggtta 38874871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 10114482 - 10114550
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||| |||||||||||||| |||||| ||||| |||||||||||||||||| |||| ||| ||||    
T  10114482 tataagctataagctgttttcattagctatattggagaacatatgaaaataagctgaaaacagcatatg 10114550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 27028824 - 27028892
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||| ||| ||||||||||||||||||||| ||||| | | |||||||||||||| |||||||||||||    
T  27028824 tatatgctataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaatagcttatg 27028892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 28769422 - 28769345
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    ||||| |||||||| ||||||||||||||||||||||||||| |   |||| ||||||||| |||| | |||||||||    
T  28769422 ttttcttataagctataagctgttttcataagctattttggagagtttatggaaataagctgaaaacaacttatggac 28769345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 35220787 - 35220731
Alignment:
Q  54 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatgg 110  Q
    |||||||||||||||||| |||| | | ||| |||||||||||||||||||||||||    
T  35220787 ctgttttcataagctattctggagagcttataaaaataagctaaaaatagcttatgg 35220731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 43718005 - 43717946
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||||| |||||||||| ||||| ||| ||||||| ||||||||||| ||||||||    
T  43718005 taagctgtttgcataagctatcttggagaacttatgaaagtaagctaaaaacagcttatg 43717946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 7008633 - 7008753
Alignment:
Q  82 tatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctc 181  Q
    ||||||||||||||||||||| |||| |||| ||| ||| | |||||||||||||||||    ||| |||| || | ||||||||| | ||||||| |||    
T  7008633 tatgaaaataagctaaaaatatcttaaggacatgtcata-ggttgtttctataagctctctctaac-gtctcacaagtgcttatgccagtagataaactc 7008730  T
Q  182 aaataaaacaatccaaacaggct 204  Q
    ||||||  |||| ||||||||||    
T  7008731 aaataagtcaattcaaacaggct 7008753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 11795079 - 11795156
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    |||||||||||| | ||||||| |||||||||||||| |||| | | |||| ||||||||| |||| || ||||||||    
T  11795079 ttttcatataagttataagctgatttcataagctattatggagagcttatggaaataagctgaaaacaggttatggac 11795156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 7514565 - 7514604
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttg 74  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  7514565 ttttcatataagctacaagctgttttcataagctattttg 7514604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 30251522 - 30251463
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||||||||||||||||||| |||||  || ||||||||||||||  ||| ||||||||    
T  30251522 taagctgttttcataagctatcttggaccacttatgaaaataagctgtaaaaagcttatg 30251463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 35869824 - 35869867
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggata 78  Q
    |||||||||||||| |||| ||||||||||||||||| ||||||    
T  35869824 ttttcatataagctataagttgttttcataagctattgtggata 35869867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 8062511 - 8062585
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||||||||| |||| |||| ||||||||||| || || |   ||||||||||||||  ||||||||||||    
T  8062511 ttttcatataagctataagatgttctcataagctatcttagagagtttatgaaaataagctggaaatagcttatg 8062585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 14926939 - 14926893
Alignment:
Q  220 ttatgctagtaaataagctcaaataagtcaatctaaacatgccctaa 266  Q
    |||||| |||||||||| ||||||||||||||| ||||| |||||||    
T  14926939 ttatgccagtaaataagttcaaataagtcaatccaaacaagccctaa 14926893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 21653091 - 21653149
Alignment:
Q  58 tttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgt 116  Q
    |||||| |||||| ||||| | | |||||||||||||| ||||||||||||| ||||||    
T  21653091 tttcattagctatcttggagagcttatgaaaataagctgaaaatagcttatgaacgtgt 21653149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 42215257 - 42215219
Alignment:
Q  220 ttatgctagtaaataagctcaaataagtcaatctaaaca 258  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  42215257 ttatgccagtaaataagctcaaataagttaatctaaaca 42215219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 2482858 - 2482924
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||| ||||||||||||||  ||||| ||||||||| |||  ||||||||| |||| ||||||||    
T  2482858 tataagctataagctgttttcat--gctatcttggataacttatagaaataagctgaaaacagcttatg 2482924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 9700113 - 9700158
Alignment:
Q  219 tttatgctagtaaataagctcaaataagtcaatctaaacatgccct 264  Q
    |||||||||||| |||||||||||||||| |||| ||||| |||||    
T  9700113 tttatgctagtagataagctcaaataagttaatccaaacaggccct 9700158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 9956897 - 9956832
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 100  Q
    ||||| |||||| | |||| ||||||||||| |||| ||||| ||| |||||||||||||| ||||    
T  9956897 ttttcctataagttataagttgttttcataatctatcttggagaacttatgaaaataagctgaaaa 9956832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 12361179 - 12361256
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    |||||||||||||| ||||||||||||||||| ||||  ||| | |  ||| ||||||| | |||| |||||||||||    
T  12361179 ttttcatataagctataagctgttttcataagttattcaggagagctaatggaaataagttgaaaacagcttatggac 12361256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 30013209 - 30013282
Alignment:
Q  39 catataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    |||||||||| |||||||||||||||||||||  || | |||  ||| ||||||||| ||||||| ||| ||||    
T  30013209 catataagctataagctgttttcataagctatcctgtagaactaatggaaataagctgaaaatagtttagggac 30013282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 44236887 - 44236834
Alignment:
Q  54 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 107  Q
    ||||||||||||||||| ||||| | | |||||||||||||| |||||| ||||    
T  44236887 ctgttttcataagctatattggagagcttatgaaaataagctgaaaataactta 44236834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 6966881 - 6966976
Alignment:
Q  44 aagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctct 140  Q
    ||||| |||||||||||||| ||| || ||||  | | |||||||||||||  |||||||||||  ||| ||||||| | ||||||| |||||||||    
T  6966881 aagctataagctgttttcattagccatcttggggagcttatgaaaataagcggaaaatagcttaatgacatgttataag-ttgtttcaataagctct 6966976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 31705073 - 31705105
Alignment:
Q  36 tttcatataagctctaagctgttttcataagct 68  Q
    ||||||||||||| |||||||||||||||||||    
T  31705073 tttcatataagctataagctgttttcataagct 31705105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 31884900 - 31884856
Alignment:
Q  159 tgcttatgctaatagataagctcaaataaaacaatccaaacaggc 203  Q
    ||||||||||| |||||||||||||||||  |||||||| |||||    
T  31884900 tgcttatgctagtagataagctcaaataacgcaatccaagcaggc 31884856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 34769463 - 34769427
Alignment:
Q  232 ataagctcaaataagtcaatctaaacatgccctaatt 268  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  34769463 ataagctcaaatatgtcaatccaaacatgccctaatt 34769427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 35534570 - 35534522
Alignment:
Q  220 ttatgctagtaaataagctcaaataagtcaatctaaacatgccctaatt 268  Q
    ||||| ||||| |||||||||||||||||| |||||||| |||| ||||    
T  35534570 ttatgttagtagataagctcaaataagtcattctaaacaggccccaatt 35534522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 39105451 - 39105525
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||| |||||||| ||| ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  39105451 ttttcgtataagctataatctgttttcataagctatcttggagaacttatgaaaataagctaaaaatagcttatg 39105525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 188
Target Start/End: Original strand, 32172644 - 32172792
Alignment:
Q  39 catataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagct 138  Q
    |||||||||| |||||||||||||||||||||  || | |||  ||| ||||||||| ||||| |||||||||| ||| ||| | ||||||| |||||||    
T  32172644 catataagctataagctgttttcataagctatcatgaagaactaatggaaataagctgaaaatggcttatggacatgtcataag-ttgtttccataagct 32172742  T
Q  139 cttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaa 188  Q
    || |  |||  ||| || | ||||||||||| || |||||||||||||||    
T  32172743 ctcccaaactatctcacaagtgcttatgctagtatataagctcaaataaa 32172792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 4014492 - 4014433
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||||||||||||||||||| ||||| ||| |||||||||||||| |||| ||||||||    
T  4014492 taagctgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttatg 4014433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 28776980 - 28777048
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatag 103  Q
    ||||| |||| ||| ||||||||||||||||||||| ||||| |||  ||||||||||| |||||||||    
T  28776980 ttttcgtataggctataagctgttttcataagctatcttggagaactaatgaaaataagataaaaatag 28777048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 2568645 - 2568719
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||| |||||||| |||| ||||||||||||||||  |||| | |  |||||||||||||||||||| ||||||    
T  2568645 ttttcgtataagctataagttgttttcataagctatcatggagagctaatgaaaataagctaaaaataacttatg 2568719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 9202831 - 9202757
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||||||||  ||||||||||||||||| ||| ||| | ||| ||||||||||||||  ||| ||||||||    
T  9202831 ttttcatataagcaataagctgttttcataagttatcttgaagaacttatgaaaataagctggaaacagcttatg 9202757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 12425558 - 12425616
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataag 93  Q
    ||||| |||||||| ||||||||||||| ||||||| ||||| ||| ||||||||||||    
T  12425558 ttttcgtataagctataagctgttttcacaagctatcttggagaacttatgaaaataag 12425616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 41052874 - 41052959
Alignment:
Q  54 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctct 140  Q
    |||||||||||| |||||||||| | | |||| ||||||| ||||||||| ||||| || ||| ||| | |||||||||||||||||    
T  41052874 ctgttttcataacctattttggagagcttatggaaataagttaaaaatagtttatgaacatgtcata-ggttgtttctataagctct 41052959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 7984965 - 7985030
Alignment:
Q  44 aagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||| |||||| |||||||||||||| ||||| ||  |||||||||||||| |||| ||||||||    
T  7984965 aagctataagcttttttcataagctatcttggagaatttatgaaaataagctgaaaacagcttatg 7985030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 9174928 - 9174973
Alignment:
Q  219 tttatgctagtaaataagctcaaataagtcaatctaaacatgccct 264  Q
    ||||||||| || ||||||||||||||||||||| |||||||||||    
T  9174928 tttatgctaatagataagctcaaataagtcaatccaaacatgccct 9174973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 37588443 - 37588370
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 108  Q
    |||||||||||||| |||| |||||||||||| |||| |||| | | |||| ||||||||| |||| |||||||    
T  37588443 ttttcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagcttat 37588370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 7319393 - 7319453
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct 95  Q
    |||||||||||||| ||| |||||||| |||||||| ||||| ||| ||| ||||||||||    
T  7319393 ttttcatataagctataaactgttttcgtaagctatcttggagaacttataaaaataagct 7319453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 41981942 - 41981874
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||| || |||||||||||||||| ||||||| || ||| || |||||||||||||||  ||||||||    
T  41981942 tataaactataagctgttttcataaactatttttgagaacttacgaaaataagctaaaagcagcttatg 41981874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 201
Target Start/End: Complemental strand, 11297232 - 11297114
Alignment:
Q  82 tatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctc 181  Q
    |||||||||||||| ||||||||| || ||| |||  || ||| ||||| ||||||||||   ||||||||||| | || |||||| | ||||||||||     
T  11297232 tatgaaaataagctgaaaatagctaattgacatgtcttaagtt-gtttccataagctctttcaaacagtcttacaagtgtttatgccactagataagctt 11297134  T
Q  182 aaataaaacaatccaaacag 201  Q
    ||||||  |||| |||||||    
T  11297133 aaataagtcaattcaaacag 11297114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 31723903 - 31723950
Alignment:
Q  205 tagtctcattggtctttatgctagtaaataagctcaaataagtcaatc 252  Q
    |||||||||  || |||||||||||| |||||||||||||||||||||    
T  31723903 tagtctcataagtgtttatgctagtacataagctcaaataagtcaatc 31723950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 36326104 - 36326159
Alignment:
Q  145 aacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaaca 200  Q
    |||| ||| |||| ||||||||| |||||||||||| |||||| ||||||||||||    
T  36326104 aacaatctcaccagtgcttatgccaatagataagctaaaataagacaatccaaaca 36326159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 249
Target Start/End: Original strand, 1899265 - 1899295
Alignment:
Q  219 tttatgctagtaaataagctcaaataagtca 249  Q
    |||||||||||||||||||||||||||||||    
T  1899265 tttatgctagtaaataagctcaaataagtca 1899295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 4620187 - 4620229
Alignment:
Q  42 ataagctctaagctgttttcataagctattttggataacatat 84  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||    
T  4620187 ataagctataagctgttttcataagctatgttggagaacatat 4620229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 6587190 - 6587116
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||| |||||||| |||| ||||||||||||||||  |||| ||| | ||||||||||||  ||| ||||||||    
T  6587190 ttttcgtataagctataagttgttttcataagctatagtggagaacttgtgaaaataagctgtaaacagcttatg 6587116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 7319072 - 7319014
Alignment:
Q  54 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    ||||||||||||||||| ||||| ||| |||||||||||||| | || | |||||||||    
T  7319072 ctgttttcataagctatcttggagaacttatgaaaataagctgagaacaacttatggac 7319014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 9174929 - 9174967
Alignment:
Q  162 ttatgctaatagataagctcaaataaaacaatccaaaca 200  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  9174929 ttatgctaatagataagctcaaataagtcaatccaaaca 9174967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 10639960 - 10640014
Alignment:
Q  55 tgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||| ||||| |||||||||| ||| ||||||||||||||| ||| ||||||||    
T  10639960 tgtttacataaactattttggagaacttatgaaaataagctagaaaaagcttatg 10640014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 24030469 - 24030419
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaa 100  Q
    |||| |||||| ||||||||| || |||||| |||||||||||||||||||    
T  24030469 taagttgtttttataagctatattagataacttatgaaaataagctaaaaa 24030419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 34736472 - 34736434
Alignment:
Q  232 ataagctcaaataagtcaatctaaacatgccctaattgg 270  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  34736472 ataagctcaaataagtcaatccaaacatgccctatttgg 34736434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 8651310 - 8651265
Alignment:
Q  219 tttatgctagtaaataagctcaaataagtcaatctaaacatgccct 264  Q
    |||||||||| | ||||||||||||||| ||||| |||||||||||    
T  8651310 tttatgctagaagataagctcaaataaggcaatccaaacatgccct 8651265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 11457152 - 11457236
Alignment:
Q  102 agcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataa 187  Q
    ||||||||||| ||| ||| ||| ||||| |||||||||||  |||||||| || | || || ||| |||||||||||||||||||    
T  11457152 agcttatggacatgtcataagtt-gtttccataagctcttcaaaacagtctcacaagtgtttctgccaatagataagctcaaataa 11457236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 12975334 - 12975375
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttgga 76  Q
    |||||||||||||| |||||||| |||||||||||| |||||    
T  12975334 ttttcatataagctataagctgtgttcataagctatcttgga 12975375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 16937841 - 16937800
Alignment:
Q  161 cttatgctaatagataagctcaaataaaacaatccaaacagg 202  Q
    ||||||||| |||||||||||||||||  |||||||||||||    
T  16937841 cttatgctagtagataagctcaaataagccaatccaaacagg 16937800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 36796789 - 36796708
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgt 116  Q
    |||||| ||||||| ||||||||||||||  ||||| ||||| ||| ||  ||||||| || |||| |||||||| ||||||    
T  36796789 ttttcacataagctataagctgttttcatttgctatattggaaaacttacaaaaataaactgaaaacagcttatgaacgtgt 36796708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 37526282 - 37526209
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 108  Q
    |||||||||||||| |||| |||||||||||| | || |||| | | |||| ||||||||| |||| |||||||    
T  37526282 ttttcatataagctataagttgttttcataagttgttctggagagcttatggaaataagctgaaaacagcttat 37526209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 40119945 - 40119880
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctt 106  Q
    |||||||| ||| |||||||||||||| || ||||||||| | ||||||||| |||| || |||||    
T  40119945 tataagctataacctgttttcataagcgatcttggataacttgtgaaaataatctaagaacagctt 40119880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 41957534 - 41957457
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    ||||||| |||| | |||||||||||||||||||||  | || ||| |||||||||||| | |||| | |||||||||    
T  41957534 ttttcatgtaagttataagctgttttcataagctatccttgagaacttatgaaaataagatgaaaacaacttatggac 41957457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 1619083 - 1619150
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||| |||||||||||||||||| | |||||| | ||||||||||| |||| |||| || |||||    
T  1619083 tataagctataagctgttttcataagcca-tttggagagcatatgaaaatcagctgaaaacagtttatg 1619150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 6938693 - 6938649
Alignment:
Q  159 tgcttatgctaatagataagctcaaataaaacaatccaaacaggc 203  Q
    ||||||||||| |||||||||||||||||   |||||||||||||    
T  6938693 tgcttatgctagtagataagctcaaataacctaatccaaacaggc 6938649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 7705955 - 7705911
Alignment:
Q  220 ttatgctagtaaataagctcaaataagtcaatctaaacatgccct 264  Q
    ||||||||||| ||| ||||||||||||||||| ||||| |||||    
T  7705955 ttatgctagtagatatgctcaaataagtcaatccaaacaggccct 7705911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 32942611 - 32942659
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaa 89  Q
    |||| ||| ||||||||||||||||||||| ||||| ||| ||||||||    
T  32942611 tatatgctataagctgttttcataagctatcttggagaacttatgaaaa 32942659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 42582914 - 42582982
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgtta 118  Q
    |||||||||||  |||||||| ||||| ||| |||||||||||||| |||| || ||||| || |||||    
T  42582914 taagctgtttttgtaagctatattggagaacttatgaaaataagctcaaaacagtttatgaacatgtta 42582982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 187
Target Start/End: Original strand, 37273140 - 37273272
Alignment:
Q  54 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtctt 153  Q
    ||||||||||||||||| ||||| ||| |||| ||||||| | |||| | ||||||||| ||| ||| ||| ||||| ||||||||| |  ||||||||     
T  37273140 ctgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagtt-gtttccataagctctcccaaacagtctc 37273238  T
Q  154 accaatgcttatgctaatagataagctcaaataa 187  Q
    |||| |||||||||||||| ||||| ||||||||    
T  37273239 accagtgcttatgctaataaataagttcaaataa 37273272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 45541580 - 45541726
Alignment:
Q  57 ttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttacc 156  Q
    |||||||||||||| ||||||||| ||||| ||||| || |||| |||||||| || ||| ||| |  |||||  ||||| |||||  |||||||||||     
T  45541580 ttttcataagctatcttggataacttatgagaataacctgaaaacagcttatgaacatgtcataag-ctgttttcataagttcttctaaacagtcttaca 45541678  T
Q  157 aatgcttatgctaatagataagctcaaataaaacaatccaaacaggct 204  Q
    | || |||| | | || ||||||||||||||  |||||||||||||||    
T  45541679 agtgtttataccattaaataagctcaaataagtcaatccaaacaggct 45541726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 200
Target Start/End: Original strand, 2923466 - 2923629
Alignment:
Q  36 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataa 135  Q
    |||||| |||||| ||||||||||||||||||||   || | |   |||  |||||||||||||||| ||||||||| |||  || ||| ||||||||||    
T  2923466 tttcatgtaagctataagctgttttcataagctacactgaagagattatataaataagctaaaaataacttatggacatgtagtaagtt-gtttctataa 2923564  T
Q  136 gctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaaca 200  Q
    | |||||  ||||||||| | | | ||||||  ||||||||||||| |||||  |||||| ||||    
T  2923565 gttcttccaaacagtctttcaagtacttatgtcaatagataagctcgaataagtcaatccgaaca 2923629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 25459624 - 25459548
Alignment:
Q  125 tgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacag 201  Q
    ||||||| ||||||||||  |||| ||| || | ||||||||||| | |||||||||||||||| ||||||||||||    
T  25459624 tgtttctctaagctcttccaaacaatctcacaagtgcttatgctagttgataagctcaaataaatcaatccaaacag 25459548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 33972797 - 33972729
Alignment:
Q  55 tgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgt 123  Q
    |||||| ||||||||||||||| ||| | |||||||||||| |||| || |||||||| ||||||||||    
T  33972797 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaaaggttatggacatgttatatgt 33972729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 44747485 - 44747418
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 108  Q
    |||| ||| ||||||||||||||||||||| ||||| ||| |||||||||||||| |||  |||||||    
T  44747485 tataggctataagctgttttcataagctatcttggaaaacttatgaaaataagctgaaagaagcttat 44747418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 50600254 - 50600191
Alignment:
Q  42 ataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagct 105  Q
    ||||||| |||||||||||||| |||||| ||||| ||| |||||||||||||| |||| ||||    
T  50600254 ataagctataagctgttttcatcagctatattggagaacttatgaaaataagctgaaaacagct 50600191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 466202 - 466252
Alignment:
Q  57 ttttcataagctattttggataacatatgaaaataagctaaaaatagctta 107  Q
    |||||||||||||| ||||| ||| ||||||||||||||||||| ||||||    
T  466202 ttttcataagctatgttggagaacttatgaaaataagctaaaaaaagctta 466252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 2719463 - 2719532
Alignment:
Q  43 taagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    |||||| ||| ||||||||||||||||| ||||| ||| |||||||||||||| | || | |||||||||    
T  2719463 taagctataaactgttttcataagctatcttggagaacttatgaaaataagctgagaacaacttatggac 2719532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 203
Target Start/End: Complemental strand, 4534431 - 4534291
Alignment:
Q  62 ataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttaccaatgc 161  Q
    ||||||||||||||| | | ||   |||||||||||||  | |||| | |||||||||| ||| |||||||||| |||| |  || ||| |||| |  ||    
T  4534431 ataagctattttggagaccttacagaaataagctaaaatcaacttacgaacgtgttataagtt-gtttctataacctctaccaaatagttttacaagggc 4534333  T
Q  162 ttatgctaatagataagctcaaataaaacaatccaaacaggc 203  Q
    |||||  |||||||||||||||||||| ||||| ||||||||    
T  4534332 ttatgtgaatagataagctcaaataaatcaatcgaaacaggc 4534291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 33405250 - 33405197
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaa 88  Q
    |||||||||||||| ||||||||||||||||||||| ||| | ||| |||||||    
T  33405250 ttttcatataagctataagctgttttcataagctatcttgaagaacttatgaaa 33405197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 51929854 - 51929895
Alignment:
Q  162 ttatgctaatagataagctcaaataaaacaatccaaacaggc 203  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  51929854 ttatgctaatagataagctcaaataagtcaatccaaacaggc 51929895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 21367669 - 21367725
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctt 106  Q
    |||| |||||||||||||||| ||||| ||| |||||||||||||| |||| |||||    
T  21367669 taagttgttttcataagctatcttggagaacttatgaaaataagctgaaaacagctt 21367725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 34254891 - 34254815
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatgga 111  Q
    |||| |||| |||| ||| || ||||||||||||||| |||| ||| |||| ||||||||| ||| |||||||||||    
T  34254891 tttttatattagctataaactattttcataagctattctggagaacttatgtaaataagctgaaagtagcttatgga 34254815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 2201115 - 2201158
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggata 78  Q
    |||||||||||||| |||||||||||||| |||||| |||||||    
T  2201115 ttttcatataagctataagctgttttcattagctatcttggata 2201158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 16790439 - 16790384
Alignment:
Q  57 ttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    |||||||||||||| ||||||| | ||||||||||| || |||| |||||||||||    
T  16790439 ttttcataagctatcttggatagcttatgaaaataaactgaaaacagcttatggac 16790384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 41633362 - 41633509
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacag 149  Q
    |||||||||||||| |||||||||||| | | |||||||||||||| |||| |  |||| ||| ||| ||   ||||||| ||||| |||| | ||| ||    
T  41633362 taagctgttttcatcagctattttggagagcttatgaaaataagctgaaaacaatttatagacatgtcat-gatttgtttttataacctctcctgaatag 41633460  T
Q  150 tcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaaca 200  Q
    ||| |  | ||  | ||| |||||||||||||||||||| |||||||||||    
T  41633461 tctcataagtg--tttgccaatagataagctcaaataaaccaatccaaaca 41633509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 2128326 - 2128256
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttata 120  Q
    |||||||||||||||||| || ||  | ||| |||||||||||||| |||| |||||||| || |||||||    
T  2128326 taagctgttttcataagccatcttttagaacgtatgaaaataagctgaaaacagcttatgaacatgttata 2128256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 5436246 - 5436304
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataag 93  Q
    |||||||||||| | || ||||||||||||  |||| ||||| ||||||||||||||||    
T  5436246 ttttcatataagttgtatgctgttttcatagactatcttggagaacatatgaaaataag 5436304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 28622074 - 28622008
Alignment:
Q  43 taagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||| |||||||||||||||| |||| || || ||| ||||||||||| || |||| ||||||||    
T  28622074 taagctataagctgttttcataaactatcttcgagaacttatgaaaataacctgaaaacagcttatg 28622008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 93
Target Start/End: Original strand, 32582747 - 32582789
Alignment:
Q  51 aagctgttttcataagctattttggataacatatgaaaataag 93  Q
    |||||||||||||||||||||||||| ||| |||| |||||||    
T  32582747 aagctgttttcataagctattttggagaacttatggaaataag 32582789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 36783417 - 36783343
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||||||||| || | ||||||||||||||||||| |||||  |  |||||| ||||||| |||| ||||||||    
T  36783417 ttttcatataaactattagctgttttcataagctatattggagcaattatgaatataagctgaaaacagcttatg 36783343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 50760704 - 50760746
Alignment:
Q  220 ttatgctagtaaataagctcaaataagtcaatctaaacatgcc 262  Q
    ||||||| ||| || ||||||||||||||||||||||||||||    
T  50760704 ttatgcttgtagatgagctcaaataagtcaatctaaacatgcc 50760746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 52618990 - 52619064
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||||||| | ||||||||||||| ||||||| ||| | | | | |||||||||| | |||||||||||||    
T  52618990 ttttcatataagttataagctgttttcacaagctatcttgaagagcttgtgaaaataaggtgaaaatagcttatg 52619064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 584159 - 584196
Alignment:
Q  220 ttatgctagtaaataagctcaaataagtcaatctaaac 257  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  584159 ttatgctagtagataagctcaaataagtcaatccaaac 584196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 258
Target Start/End: Complemental strand, 9832703 - 9832674
Alignment:
Q  229 taaataagctcaaataagtcaatctaaaca 258  Q
    ||||||||||||||||||||||||||||||    
T  9832703 taaataagctcaaataagtcaatctaaaca 9832674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 14548804 - 14548739
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 100  Q
    |||||||||||||| |||| |||||||||||| |||| |||| | | |||| ||||||||| ||||    
T  14548804 ttttcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaa 14548739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 21865563 - 21865604
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttgga 76  Q
    |||||||||||||| |||| |||||| |||||||||||||||    
T  21865563 ttttcatataagctataagttgttttgataagctattttgga 21865604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 25183071 - 25182994
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct-aaaaatagcttatgga 111  Q
    ||||||||| |||| |||||||||||||||||||||  |||| ||  | || ||||| ||| ||||||||||||||||    
T  25183071 ttttcatatgagctataagctgttttcataagctatcatggaaaatttgtggaaatatgctgaaaaatagcttatgga 25182994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 30443886 - 30443951
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctt 106  Q
    |||| ||| ||||||||||| |||| |||| ||||| ||| |||||||||||||| |||| |||||    
T  30443886 tatatgctataagctgtttttataaactatattggagaacttatgaaaataagctgaaaaaagctt 30443951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 48364871 - 48364834
Alignment:
Q  219 tttatgctagtaaataagctcaaataagtcaatctaaa 256  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  48364871 tttatactagtaaataaactcaaataagtcaatctaaa 48364834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 48807811 - 48807848
Alignment:
Q  219 tttatgctagtaaataagctcaaataagtcaatctaaa 256  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  48807811 tttatgctagtaaataagcttaaataactcaatctaaa 48807848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 53762351 - 53762310
Alignment:
Q  162 ttatgctaatagataagctcaaataaaacaatccaaacaggc 203  Q
    |||||||| |||||||||||||||||| |||||||| |||||    
T  53762351 ttatgctagtagataagctcaaataaaccaatccaagcaggc 53762310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 901931 - 901987
Alignment:
Q  55 tgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatgga 111  Q
    |||||| ||||||||| ||||| ||| |||||||||||| | |||| ||||||||||    
T  901931 tgtttttataagctatattggagaacttatgaaaataagttgaaaaaagcttatgga 901987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 3775846 - 3775770
Alignment:
Q  124 ttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaaca 200  Q
    ||||||||||||||||| |  |||||||| || | || |||||| | ||||||| |||||||||  |||||||||||    
T  3775846 ttgtttctataagctctgccaaacagtctaacaattgtttatgccagtagataaactcaaataaggcaatccaaaca 3775770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 14145899 - 14145959
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct 95  Q
    ||||| |||| ||| |||| | |||||||||||||| |||||| || ||||||||||||||    
T  14145899 ttttcgtatatgctataagttattttcataagctatcttggattacttatgaaaataagct 14145959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 20880469 - 20880537
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||| ||| ||| ||||||| | ||||||| ||||| ||| |||||||||||||| |||| ||||||||    
T  20880469 tatatgctataaactgtttttaaaagctatattggagaacttatgaaaataagctcaaaaaagcttatg 20880537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 39602287 - 39602235
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataag 93  Q
    |||||| | ||||||||||||||||||||| || || ||| ||||||||||||    
T  39602287 tataagttataagctgttttcataagctatctttgagaacttatgaaaataag 39602235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 43046789 - 43046821
Alignment:
Q  232 ataagctcaaataagtcaatctaaacatgccct 264  Q
    ||||| |||||||||||||||||||||||||||    
T  43046789 ataagttcaaataagtcaatctaaacatgccct 43046821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 43948751 - 43948815
Alignment:
Q  146 acagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacaggcttagtct 210  Q
    ||||||| || ||||||||||  ||||||| | ||||||| |  |||||||||||||||||||||    
T  43948751 acagtctcacaaatgcttatgacaatagattaactcaaattagccaatccaaacaggcttagtct 43948815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 51929853 - 51929897
Alignment:
Q  219 tttatgctagtaaataagctcaaataagtcaatctaaacatgccc 263  Q
    ||||||||| || ||||||||||||||||||||| ||||| ||||    
T  51929853 tttatgctaatagataagctcaaataagtcaatccaaacaggccc 51929897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 40689069 - 40688995
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||||||||| |||||||| ||||||||||||  |||||||| |||||||||||||| |||| ||||||||    
T  40689069 ttttcatataagctataagctgtgttcataagctatcctggataacttatgaaaataagctcaaaacagcttatg 40688995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 47177623 - 47177693
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagct 105  Q
    |||||||||||||| ||||||||||||| ||||||| ||||| ||  |||||||||||||||||| |||||    
T  47177623 ttttcatataagctataagctgttttcaaaagctatcttggagaatttatgaaaataagctaaaagtagct 47177693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 20526448 - 20526505
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 107  Q
    ||||||||||||||||||||||||||| |||  |||||||||||||||||| ||||||    
T  20526448 taagctgttttcataagctattttggagaactaatgaaaataagctaaaaacagctta 20526505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 38010701 - 38010790
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtt 124  Q
    |||||||||||||| |||||||||||||||| ||||  | || ||| |||| |||||||||||||| |||||||| || |||||| ||||    
T  38010701 ttttcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaacatgttatttgtt 38010790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 47510116 - 47510190
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||||||||| |||||||||||||||| || | ||||| ||| | ||||||||||||||||  ||||||||    
T  47510116 ttttcatataagctgtaagctgttttcataaactctcttggacaacttgtgaaaataagctaaaaggagcttatg 47510190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 6263446 - 6263382
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaa 99  Q
    |||||||||||| | ||||||| |||||||||||||| |||| | |||||| |||||||||||||    
T  6263446 ttttcatataagttataagctgatttcataagctattatggagagcatatggaaataagctaaaa 6263382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 27548250 - 27548310
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct 95  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||| |||| | |||||||    
T  27548250 ttttcatttaagctataagctgttttcataagctatcttggataacttatggagataagct 27548310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 12110353 - 12110412
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 100  Q
    |||||||| ||||||||||||||||||||| ||| | ||| ||||||||||| |||||||    
T  12110353 tataagctataagctgttttcataagctatcttgaagaacttatgaaaataatctaaaaa 12110412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 24363560 - 24363517
Alignment:
Q  159 tgcttatgctaatagataagctcaaataaaacaatccaaacagg 202  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||    
T  24363560 tgcttatgctagtagataaactcaaataaaacaatccaaacagg 24363517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 48470046 - 48470105
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||| |||||||||||||||||||| ||||| |||||| ||||||| |||| ||||||||    
T  48470046 taagttgttttcataagctattttgaataacttatgaacataagctcaaaaaagcttatg 48470105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 48157203 - 48157075
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctata 134  Q
    |||| ||||||||| |||  |||||||| ||||||||  ||| | | |||| ||||||||| |||| ||||||||||| ||  ||| | |||||||||||    
T  48157203 ttttaatataagctataatttgttttcacaagctattcgggagatcttatggaaataagctgaaaacagcttatggacatggcataag-ttgtttctata 48157105  T
Q  135 agctcttcggaacagtcttaccaatgctta 164  Q
    |||||| |  |||||||| || ||||||||    
T  48157104 agctctcccaaacagtctcacaaatgctta 48157075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 23214954 - 23215014
Alignment:
Q  206 agtctcattggtctttatgctagtaaataagctcaaataagtcaatctaaacatgccctaa 266  Q
    ||||||||  || |||||||||||| ||||| ||||||||||||||| |||||||| ||||    
T  23214954 agtctcataagtgtttatgctagtagataaggtcaaataagtcaatccaaacatgctctaa 23215014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 44821952 - 44822004
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataag 93  Q
    |||||| | |||||||||||||||||||||| |||| ||| ||||||||||||    
T  44821952 tataagttataagctgttttcataagctattctggagaacttatgaaaataag 44822004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 752962 - 753029
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 108  Q
    |||||||| ||||||||||| |||| |||| ||||  | ||||||||||| ||||||||| |||||||    
T  752962 tataagctataagctgttttgataaactatcttggggagcatatgaaaattagctaaaaacagcttat 753029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 43648242 - 43648285
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataag 93  Q
    ||||||||||||||||||||| ||||| || |||||||||||||    
T  43648242 taagctgttttcataagctatcttggagaaaatatgaaaataag 43648285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 45790502 - 45790443
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 100  Q
    |||||||| |||| |||||| |||| |||| ||||||||| |||||||||||||| ||||    
T  45790502 tataagctataagttgtttttataaactatattggataacttatgaaaataagctgaaaa 45790443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 6601369 - 6601431
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    ||||||||||| |||||||||| ||||   | |||||||||||||| | ||||||||||||||    
T  6601369 taagctgtttttataagctattctggagtgcttatgaaaataagctgagaatagcttatggac 6601431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 33128755 - 33128813
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 108  Q
    |||||||||| ||||| |||| ||||| ||| | ||||||||||||||||| |||||||    
T  33128755 taagctgtttacataaactatattggagaacttgtgaaaataagctaaaaaaagcttat 33128813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 39505944 - 39506014
Alignment:
Q  36 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctt 106  Q
    ||||||||||||  |||| ||||||||||||||||| |||| |   |||| ||||||||| ||||||||||    
T  39505944 tttcatataagcattaagttgttttcataagctattctggagagtttatggaaataagctgaaaatagctt 39506014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 33678776 - 33678825
Alignment:
Q  44 aagctctaagctgttttcataagctattttggataacatatgaaaataag 93  Q
    ||||| ||||||||||||||||||||| ||||| ||| | ||||||||||    
T  33678776 aagctataagctgttttcataagctatcttggaaaacttgtgaaaataag 33678825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 265
Target Start/End: Complemental strand, 34083565 - 34083520
Alignment:
Q  220 ttatgctagtaaataagctcaaataagtcaatctaaacatgcccta 265  Q
    |||||| |||| || |||||||||||||||||| ||||||||||||    
T  34083565 ttatgcaagtagatgagctcaaataagtcaatccaaacatgcccta 34083520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 46280349 - 46280284
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctt 106  Q
    |||| ||| ||||||||||| ||||||||| ||||| ||| |||||||||| ||| |||| |||||    
T  46280349 tatatgctataagctgtttttataagctatattggagaacttatgaaaataggctgaaaaaagctt 46280284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 5010426 - 5010390
Alignment:
Q  222 atgctagtaaataagctcaaataagtcaatctaaaca 258  Q
    |||||||||||||| |||||||||||||||| |||||    
T  5010426 atgctagtaaataaactcaaataagtcaatcaaaaca 5010390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 28340924 - 28340892
Alignment:
Q  38 tcatataagctctaagctgttttcataagctat 70  Q
    ||||||||||| |||||||||||||||||||||    
T  28340924 tcatataagctataagctgttttcataagctat 28340892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 30535550 - 30535622
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 107  Q
    ||||| ||||| || |||||||||| |||||||||| ||  | ||||||||||||||| || |||| ||||||    
T  30535550 ttttcgtataatctataagctgtttccataagctatcttatagaacatatgaaaataacctgaaaacagctta 30535622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 32410648 - 32410688
Alignment:
Q  157 aatgcttatgctaatagataagctcaaataaaacaatccaa 197  Q
    ||||||||||| |||||||||||||||||||  ||||||||    
T  32410648 aatgcttatgccaatagataagctcaaataagccaatccaa 32410688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 36517588 - 36517640
Alignment:
Q  57 ttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||||||||| ||||| ||  ||||||||||| || |||||||||||||    
T  36517588 ttttcataagctatcttggagaaattatgaaaataaactgaaaatagcttatg 36517640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 40371599 - 40371567
Alignment:
Q  232 ataagctcaaataagtcaatctaaacatgccct 264  Q
    ||||||||||||||||||||| |||||||||||    
T  40371599 ataagctcaaataagtcaatccaaacatgccct 40371567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 40598440 - 40598404
Alignment:
Q  222 atgctagtaaataagctcaaataagtcaatctaaaca 258  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  40598440 atgctagtagataagctcaaataagtcaatccaaaca 40598404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 47559669 - 47559629
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaat 90  Q
    ||||||||||||||||| ||||||||| ||| |||||||||    
T  47559669 taagctgttttcataagttattttggagaacttatgaaaat 47559629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 47)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 18066115 - 18066189
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||||||||| ||||||||||||||||||||| ||||| ||| || ||||||||| | |||||||||||||    
T  18066115 ttttcatataagctataagctgttttcataagctatcttggagaacttaagaaaataaggtgaaaatagcttatg 18066189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 187
Target Start/End: Original strand, 15377752 - 15377903
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagc-taaaaatagcttatggacgtgttatatgtttgtttctat 133  Q
    |||||||||||| | |||||||||||||||||||||| ||   | | ||||||||||| | |||||||||||||||||||||| ||| | ||||||| ||    
T  15377752 ttttcatataagttataagctgttttcataagctattctgaggagcttatgaaaataaacttaaaaatagcttatggacgtgtcataag-ttgtttccat 15377850  T
Q  134 aagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataa 187  Q
     || | |||  ||||| ||||| | |||||||| || || ||||||||||||||    
T  15377851 -agattttccaaacagccttacaattgcttatgttagtacataagctcaaataa 15377903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 18179323 - 18179246
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    |||||||||||||| ||||||| |||||||||||||  |||| ||| || ||||||||||| ||||||||| ||||||    
T  18179323 ttttcatataagctataagctgctttcataagctatcctggagaacttacgaaaataagctgaaaatagctaatggac 18179246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 22681268 - 22681179
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtt 124  Q
    |||||||||||||| |||||||||||||||| ||||  | || ||| |||| |||||||||||||| |||||||| || |||||| ||||    
T  22681268 ttttcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaacatgttatttgtt 22681179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 200
Target Start/End: Original strand, 11513885 - 11514047
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctata 134  Q
    |||||||||||||| |||| ||||||||||||||||  |||| ||| | || ||||||||| |||||||||||| | | ||  ||     |||||  |||    
T  11513885 ttttcatataagctataagttgttttcataagctatcatggagaacttttggaaataagctgaaaatagcttataggcatgccat---gctgttttcata 11513981  T
Q  135 agctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaaca 200  Q
    ||||||    |||||||| || | ||||||||||| ||||||| |||||||||| |||||||||||    
T  11513982 agctctctaaaacagtctcacaagtgcttatgctagtagataatctcaaataaaccaatccaaaca 11514047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 8017421 - 8017477
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaata 91  Q
    |||||||||||||| ||| ||||||||||||||||| ||||| ||| ||||||||||    
T  8017421 ttttcatataagctgtaaactgttttcataagctatcttggagaacttatgaaaata 8017477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 2416426 - 2416473
Alignment:
Q  220 ttatgctagtaaataagctcaaataagtcaatctaaacatgccctaat 267  Q
    ||||| ||||| |||| |||||||||||||||||||||||||||||||    
T  2416426 ttatgttagtagataaactcaaataagtcaatctaaacatgccctaat 2416473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 15370297 - 15370239
Alignment:
Q  145 aacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacaggc 203  Q
    |||||||| || ||||||||||| | |||||||||||||||||  ||||||||||||||    
T  15370297 aacagtctcacaaatgcttatgccagtagataagctcaaataagtcaatccaaacaggc 15370239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 32821848 - 32821961
Alignment:
Q  87 aaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaata 186  Q
    |||||| || |||| ||||||||||| ||| ||| ||| |||||||||| ||||||  ||||||||| | |||||||| | |  ||||||||||||||||    
T  32821848 aaataaactgaaaacagcttatggacatgtcataagtt-gtttctataaactcttccaaacagtcttgcaaatgcttacgttggtagataagctcaaata 32821946  T
Q  187 aaacaatccaaacag 201  Q
    |  ||||| ||||||    
T  32821947 agtcaatctaaacag 32821961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 6167358 - 6167305
Alignment:
Q  43 taagctctaagctgttttcataagctattttggataacatatgaaaataagcta 96  Q
    |||||| ||||||||||| ||||||||||||||| ||| |||| ||||||||||    
T  6167358 taagctataagctgtttttataagctattttggagaacttatggaaataagcta 6167305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 29643498 - 29643465
Alignment:
Q  36 tttcatataagctctaagctgttttcataagcta 69  Q
    ||||||||||||||||||||||||||||||||||    
T  29643498 tttcatataagctctaagctgttttcataagcta 29643465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 39983329 - 39983402
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 108  Q
    |||||||||||||| |||| ||||||||||||||||  |||| | |  |||||||||| || ||||||||||||    
T  39983329 ttttcatataagctataagttgttttcataagctatcctggagagctaatgaaaataaactgaaaatagcttat 39983402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 42457943 - 42458000
Alignment:
Q  43 taagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 100  Q
    |||||||| |||||| |||||||||||| || || |||||||||||||||||| ||||    
T  42457943 taagctcttagctgtattcataagctatcttagagaacatatgaaaataagctgaaaa 42458000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 26143708 - 26143656
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaata 102  Q
    ||||||||||||||||||||  ||||| ||| |||||||||||||| ||||||    
T  26143708 taagctgttttcataagctaacttggagaacttatgaaaataagctgaaaata 26143656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 33503105 - 33503153
Alignment:
Q  156 caatgcttatgctaatagataagctcaaataaaacaatccaaacaggct 204  Q
    |||||||||||||| |||||||||||||||||  |||| ||||||||||    
T  33503105 caatgcttatgctagtagataagctcaaataagccaatacaaacaggct 33503153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 40279190 - 40279258
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||| | |||| |||||||||||||||| ||||| ||| ||||||||| |||| ||||||| |||||    
T  40279190 tataagatataagttgttttcataagctatgttggagaacttatgaaaattagctgaaaatagtttatg 40279258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 3611232 - 3611287
Alignment:
Q  54 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||||||| ||||||| ||||| ||| ||||||||||||||||||| || |||||    
T  3611232 ctgttttcacaagctatcttggagaacttatgaaaataagctaaaaacagtttatg 3611287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 6993805 - 6993730
Alignment:
Q  37 ttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    |||||||||||| || | ||||||||||||||||  | || | | ||||||||||||||||||||  |||||||||    
T  6993805 ttcatataagctataggttgttttcataagctatgcttgagagcttatgaaaataagctaaaaatgacttatggac 6993730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 9174817 - 9174876
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||||||||||||||||||| ||  | | | |||||||||||||| |||||||||||||    
T  9174817 taagctgttttcataagctatcttacagagcttatgaaaataagctgaaaatagcttatg 9174876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 258
Target Start/End: Original strand, 9395245 - 9395280
Alignment:
Q  223 tgctagtaaataagctcaaataagtcaatctaaaca 258  Q
    |||||||||||||||||||||||||||||| |||||    
T  9395245 tgctagtaaataagctcaaataagtcaatccaaaca 9395280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 14302918 - 14302961
Alignment:
Q  145 aacagtcttaccaatgcttatgctaatagataagctcaaataaa 188  Q
    |||||||| || |||| |||||||||||||||||||||||||||    
T  14302918 aacagtctcacaaatgtttatgctaatagataagctcaaataaa 14302961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 25800816 - 25800851
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctat 70  Q
    |||||||||||||| |||||||||||||||||||||    
T  25800816 ttttcatataagctataagctgttttcataagctat 25800851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 33931647 - 33931612
Alignment:
Q  41 tataagctctaagctgttttcataagctattttgga 76  Q
    |||||||| |||||||||||||||||||||||||||    
T  33931647 tataagctataagctgttttcataagctattttgga 33931612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 42621452 - 42621393
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 100  Q
    |||||||| ||||||||||||||||| |||| |||| ||| | |||||||||||| ||||    
T  42621452 tataagctataagctgttttcataagttattctggagaacttgtgaaaataagctgaaaa 42621393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 6772478 - 6772444
Alignment:
Q  232 ataagctcaaataagtcaatctaaacatgccctaa 266  Q
    ||||||||||||||||||||| |||||||||||||    
T  6772478 ataagctcaaataagtcaatccaaacatgccctaa 6772444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 10285970 - 10286012
Alignment:
Q  159 tgcttatgctaatagataagctcaaataaaacaatccaaacag 201  Q
    ||||||||| |||||||||||| |||||| |||||||||||||    
T  10285970 tgcttatgcaaatagataagcttaaataagacaatccaaacag 10286012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 26626860 - 26626934
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||| ||||||||  |||||||||||||||||||| ||| | ||| ||||||||||| || |||| || |||||    
T  26626860 ttttcgtataagctagaagctgttttcataagctatcttgcagaacttatgaaaataacctgaaaacagattatg 26626934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 29316858 - 29316784
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||| |||| || |||||||||||||| |||||| ||||| ||| |||| ||||||||| |||| | ||||||    
T  29316858 ttttcacataatctataagctgttttcatcagctatcttggagaacttatggaaataagctgaaaagaacttatg 29316784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 33319876 - 33319822
Alignment:
Q  54 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 108  Q
    |||||||||||| |||| ||||| ||| |||||||||||||| |||| |||||||    
T  33319876 ctgttttcataaactatcttggagaacttatgaaaataagctgaaaaaagcttat 33319822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 35378489 - 35378443
Alignment:
Q  220 ttatgctagtaaataagctcaaataagtcaatctaaacatgccctaa 266  Q
    |||||||| || ||||||||||||||| ||||| |||||||||||||    
T  35378489 ttatgctattatataagctcaaataagccaatccaaacatgccctaa 35378443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 37448734 - 37448696
Alignment:
Q  220 ttatgctagtaaataagctcaaataagtcaatctaaaca 258  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  37448734 ttatgctggtagataagctcaaataagtcaatctaaaca 37448696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 40279409 - 40279471
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    |||| |||||||||||||||| ||||| ||| |||||||||||| | |||| || ||||||||    
T  40279409 taagttgttttcataagctatattggagaacttatgaaaataagttgaaaacagtttatggac 40279471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 680490 - 680555
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 100  Q
    ||||| |||||||| |||||| |||||||||||||| ||| | ||| | |||||||||||| ||||    
T  680490 ttttcgtataagctataagctattttcataagctatcttgaagaacttgtgaaaataagctgaaaa 680555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 1893355 - 1893290
Alignment:
Q  44 aagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||| ||||||||||||  ||||||| ||||| ||| | |||||||||||| |||||| ||||||    
T  1893355 aagctataagctgttttcggaagctatcttggagaacttgtgaaaataagctgaaaataacttatg 1893290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 9395117 - 9395190
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 108  Q
    ||||||||||| || |||||||||||||| || |||| || | | | |||||||||||||| |||| |||||||    
T  9395117 ttttcatataatctataagctgttttcattagttattctgtagagcttatgaaaataagctgaaaacagcttat 9395190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 12464550 - 12464485
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctt 106  Q
    |||| ||| |||||| |||||||||||||| ||||| ||| | |||||||||||| |||| |||||    
T  12464550 tatatgctataagctattttcataagctatcttggagaacttgtgaaaataagctgaaaaaagctt 12464485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 16353848 - 16353889
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttgga 76  Q
    |||||||||||||| ||||||||||| ||||||||| |||||    
T  16353848 ttttcatataagctataagctgtttttataagctatcttgga 16353889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 16398116 - 16398173
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 107  Q
    |||||| |||||||||| ||| ||||| ||| |||||||||||||| |||| ||||||    
T  16398116 taagctattttcataagttatgttggagaacttatgaaaataagctgaaaacagctta 16398173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 34652097 - 34652017
Alignment:
Q  57 ttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagct 138  Q
    |||||||||||||| ||||| | | |||| ||||||| | |||| ||||||||||| ||| ||| | |||||||||||||||    
T  34652097 ttttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataag-ttgtttctataagct 34652017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 35378598 - 35378541
Alignment:
Q  52 agctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||||| ||||| || ||||||| | |||||||||||||| |||||| ||||||    
T  35378598 agctgttttcgtaagcaatcttggatagcttatgaaaataagctgaaaataacttatg 35378541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 41875736 - 41875675
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagcta 96  Q
    ||||| |||||||| ||||||||||||||||||||| ||||  | | || ||||||||||||    
T  41875736 ttttcgtataagctgtaagctgttttcataagctatcttggtgagcttaagaaaataagcta 41875675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 750664 - 750731
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||| | |||||||| |||||||||| ||||| ||| |||| ||||||||| |||| ||||||||    
T  750664 tataagctatgagctgttt-cataagctatcttggagaacttatgcaaataagctcaaaacagcttatg 750731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 938593 - 938517
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatgga 111  Q
    |||||||||||||| ||||| || |||||||||||| || || | | | |||||||||| | ||||| |||||||||    
T  938593 ttttcatataagctataagcggtattcataagctatcttagagagcttctgaaaataagtttaaaatggcttatgga 938517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 3458707 - 3458747
Alignment:
Q  219 tttatgctagtaaataagctcaaataagtcaatctaaacat 259  Q
    ||||||| ||||| ||||||||||||||||||||| |||||    
T  3458707 tttatgccagtaagtaagctcaaataagtcaatcttaacat 3458747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 40759270 - 40759314
Alignment:
Q  159 tgcttatgctaatagataagctcaaataaaacaatccaaacaggc 203  Q
    ||||||||  |||||||||||||||||||  ||||||||||||||    
T  40759270 tgcttatgtcaatagataagctcaaataaggcaatccaaacaggc 40759314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 42592326 - 42592358
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagc 67  Q
    |||||||||||||| ||||||||||||||||||    
T  42592326 ttttcatataagctataagctgttttcataagc 42592358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 42868437 - 42868397
Alignment:
Q  163 tatgctaatagataagctcaaataaaacaatccaaacaggc 203  Q
    ||||| |||||||||||||||||||  ||||||||||||||    
T  42868437 tatgccaatagataagctcaaataaggcaatccaaacaggc 42868397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 48)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 4622079 - 4622157
Alignment:
Q  34 cttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    ||||||||||||||| |||||||||| |||| ||||| ||||| | | | ||||||||||||||||| |||||||||||    
T  4622079 cttttcatataagctataagctgtttccatatgctatcttggagagcttgtgaaaataagctaaaaacagcttatggac 4622157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 7137075 - 7137007
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||| || ||||||||||||||||||||| ||||| ||| |||||||||||||| |||||| ||||||    
T  7137075 tataatctataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatg 7137007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 9656637 - 9656711
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||||||||| |||||||| ||||||||||||  ||||| |  |||||||||||||| |||| ||||||||    
T  9656637 ttttcatataagctataagctgtgttcataagctatcctggatgaattatgaaaataagctcaaaacagcttatg 9656711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 28482315 - 28482242
Alignment:
Q  36 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||||||||||| ||||||||||| ||||| ||| ||||| | | || ||||||||||||||||||| |||||    
T  28482315 tttcatataagctataagctgtttttataagttatcttggagagcttacgaaaataagctaaaaatagtttatg 28482242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 27820414 - 27820346
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||| || |||||||| ||||||||| ||||| ||  |||||||||||||| |||||||||||||    
T  27820414 tataagctatatgctgtttttataagctatcttggagaatttatgaaaataagctgaaaatagcttatg 27820346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 34290229 - 34290297
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||| ||||||||||||||||||||| ||| | ||| |||||||||||||| |||| | ||||||    
T  34290229 tataagctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatg 34290297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 35179141 - 35179201
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatgg 110  Q
    ||||||||||||||||| |||| |||| ||| |||||||||||||| |||| |||||||||    
T  35179141 taagctgttttcataagttattatggagaacttatgaaaataagctgaaaacagcttatgg 35179201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 45975683 - 45975751
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||||||  |||||||||||||||||||| ||||| ||  |||||||||||||| |||| ||||||||    
T  45975683 tataagctacaagctgttttcataagctatcttggagaatttatgaaaataagctgaaaacagcttatg 45975751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 202
Target Start/End: Complemental strand, 6231899 - 6231733
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctata 134  Q
    ||||||||||| || |||||||||||| |||||||   || | ||| |||  ||||||||| |||| || |||||||| ||| || |  ||||||| ||     
T  6231899 ttttcatataatctataagctgttttcgtaagctaacctgaagaacttatagaaataagctgaaaacagtttatggacatgtcat-tagttgtttccatg 6231801  T
Q  135 agctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacagg 202  Q
    |||| | | ||||| ||| || |||| |||||||| ||||||| |||||||||| |||| ||||||||    
T  6231800 agctatccagaacaatctcacaaatgtttatgctagtagataacctcaaataaaccaattcaaacagg 6231733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 31517822 - 31517672
Alignment:
Q  36 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataa 135  Q
    ||||||||||||| |||||||| ||||||| || | ||||| | | |||||||||||||| |||| |||||||| || ||| ||  | ||||||  ||||    
T  31517822 tttcatataagctataagctgtcttcataatctgtcttggagagcttatgaaaataagctgaaaacagcttatgaacatgtcatgag-ttgttttgataa 31517724  T
Q  136 gctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataa 187  Q
    | ||| |  |||||||| || | ||||||||| | || ||||||||||||||    
T  31517723 gttctcccaaacagtctcacaagtgcttatgccagtaaataagctcaaataa 31517672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 42556563 - 42556525
Alignment:
Q  220 ttatgctagtaaataagctcaaataagtcaatctaaaca 258  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  42556563 ttatgctagtatataagctcaaataagtcaatctaaaca 42556525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 51695558 - 51695504
Alignment:
Q  55 tgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||||||||||| ||||| ||  |||||||||||||| |||||||||||||    
T  51695558 tgttttcataagctatcttggagaatttatgaaaataagctgaaaatagcttatg 51695504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 4576807 - 4576852
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagct 95  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||||||    
T  4576807 taagctgttttcataagctatattgaataacttatgaaaataagct 4576852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 7218157 - 7218076
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgt 116  Q
    |||||||||||||| |||| ||||||||||| ||||  |||| ||| |||||||||||| | |||| ||||| || ||||||    
T  7218157 ttttcatataagctataagttgttttcataacctatcctggagaacttatgaaaataagttgaaaacagcttgtgaacgtgt 7218076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 39603899 - 39603842
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 107  Q
    |||| |||||| ||| ||||||||||||| | |||||||||||||| |||||||||||    
T  39603899 taagttgtttttatatgctattttggatagcttatgaaaataagctgaaaatagctta 39603842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 12763419 - 12763475
Alignment:
Q  145 aacagtcttaccaatgcttatgctaatagataagctc-aaataaaacaatccaaaca 200  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||  |||||||||||    
T  12763419 aacagtcttacaaatgcttatgctaatagataaactcaaaataagccaatccaaaca 12763475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 27963452 - 27963376
Alignment:
Q  36 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    ||||||| ||| |||||| ||||||||||||||||| |||| | | |||  |||||||||||||| | |||||||||    
T  27963452 tttcataaaagttctaagttgttttcataagctattatggagagcttatataaataagctaaaaacaacttatggac 27963376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 28689537 - 28689458
Alignment:
Q  35 ttttcatataagctctaagctgttttcata--agctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    |||||||||||||| |||| ||||||||||  |||||| ||||| | | |||||||||||||| |||| | |||||||||    
T  28689537 ttttcatataagctataagttgttttcatataagctatcttggaaagcttatgaaaataagctgaaaacaacttatggac 28689458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 38867909 - 38867849
Alignment:
Q  40 atataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 100  Q
    ||||||||| ||| ||||||||||||| ||| ||| | ||| |||||||||||||||||||    
T  38867909 atataagctttaaactgttttcataagttatcttgaagaacttatgaaaataagctaaaaa 38867849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 11695975 - 11696021
Alignment:
Q  220 ttatgctagtaaataagctcaaataagtcaatctaaacatgccctaat 267  Q
    |||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  11695975 ttatgctaataaataagctcaaataagtcaatccaaaca-gccctaat 11696021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 25944420 - 25944491
Alignment:
Q  36 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 107  Q
    |||||| |||| | ||||| |||||||||||||||  ||||| |  |||||||||||||| |||||||||||    
T  25944420 tttcatgtaagttataagcggttttcataagctatcctggattaattatgaaaataagctgaaaatagctta 25944491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 38189773 - 38189816
Alignment:
Q  57 ttttcataagctattttggataacatatgaaaataagctaaaaa 100  Q
    ||||| |||||||||||||||||| |||||| ||||||||||||    
T  38189773 ttttcttaagctattttggataacttatgaagataagctaaaaa 38189816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 39270506 - 39270431
Alignment:
Q  37 ttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    |||||||||| | ||||||||||||||||||||   | || | |||||||||||||| | |||| |||||||||||    
T  39270506 ttcatataagatataagctgttttcataagctaccatagagagcatatgaaaataagttgaaaacagcttatggac 39270431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 2294905 - 2294975
Alignment:
Q  42 ataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    ||||||| |||||| ||||||||| |||| ||||| ||| || ||||||||| | |||| |||||||||||    
T  2294905 ataagctataagctattttcataaactatcttggagaacttacgaaaataaggtgaaaacagcttatggac 2294975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 4549536 - 4549462
Alignment:
Q  124 ttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaa 198  Q
    ||||||||||||||||| |  |||||||| |  ||||||||||| | ||||||| |||||||||  |||||||||    
T  4549536 ttgtttctataagctctcccaaacagtctcagaaatgcttatgccagtagataatctcaaataagccaatccaaa 4549462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 16145035 - 16144981
Alignment:
Q  53 gctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 107  Q
    |||| |||||||| |||| ||| ||||| ||||||||||| ||||||||||||||    
T  16145035 gctgctttcataaactatcttgaataacttatgaaaataacctaaaaatagctta 16144981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 16322836 - 16322910
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||| ||| | ||||||||||||||| ||||||||| | | | |||| |||||||||||||| | ||||||    
T  16322836 ttttcatagaagttataagctgttttcataggctattttgaagagcttatggaaataagctaaaaacaacttatg 16322910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 28467548 - 28467586
Alignment:
Q  222 atgctagtaaataagctcaaataagtcaatctaaacatg 260  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  28467548 atgctagtaaataaactcaaataagtcaatccaaacatg 28467586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 37631517 - 37631475
Alignment:
Q  161 cttatgctaatagataagctcaaataaaacaatccaaacaggc 203  Q
    ||||||||||||||| |||||||||||  ||||||||||||||    
T  37631517 cttatgctaatagatgagctcaaataagccaatccaaacaggc 37631475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 41195257 - 41195203
Alignment:
Q  54 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 108  Q
    |||||||||||| |||| ||||| ||| |||||||||||||| |||| |||||||    
T  41195257 ctgttttcataaactatcttggagaacttatgaaaataagctgaaaaaagcttat 41195203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 49888754 - 49888824
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagct 105  Q
    ||||| |||||||| | || |||||||||||||||| || || ||| |||||||||||||  |||||||||    
T  49888754 ttttcgtataagctattagttgttttcataagctatcttagagaacttatgaaaataagccgaaaatagct 49888824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 2777885 - 2778040
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctct 140  Q
    |||||||| ||||||||||| ||||| ||  ||||| ||| |||||||||||||| ||||  ||||||| |   || ||| ||| ||||| ||||| |||    
T  2777885 tataagctataagctgttttaataagttaacttggagaacttatgaaaataagctgaaaacggcttatgaatacgtcataagttggtttc-ataagttct 2777983  T
Q  141 tcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaa 198  Q
     |  |||||||| | |||  ||||||| |||||||||||| ||||||  |||||||||    
T  2777984 cctaaacagtctca-caaaacttatgcaaatagataagctaaaataagccaatccaaa 2778040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 6774976 - 6775048
Alignment:
Q  36 tttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||||||||  |||||||||||| ||||||| ||| | |||||| | ||||||||| |||| ||||||||    
T  6774976 tttcatataagcta-aagctgttttcacaagctatcttgaagaacataagtaaataagctgaaaacagcttatg 6775048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 7941615 - 7941664
Alignment:
Q  57 ttttcataagctattttggataacatatgaaaataagctaaaaatagctt 106  Q
    |||||||||||||||| ||| ||| |||||||||||| | ||||||||||    
T  7941615 ttttcataagctatttcggagaacttatgaaaataagttgaaaatagctt 7941664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 24279861 - 24279898
Alignment:
Q  219 tttatgctagtaaataagctcaaataagtcaatctaaa 256  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  24279861 tttatgctagtaaataagttcaaataagacaatctaaa 24279898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 25006117 - 25006076
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttgga 76  Q
    |||||||||||||| |||| |||||||||||||||| |||||    
T  25006117 ttttcatataagctataagttgttttcataagctatcttgga 25006076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 27887197 - 27887136
Alignment:
Q  39 catataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 100  Q
    |||||||||| |||| ||||||||||| ||||  |||| | ||||| |||||||||||||||    
T  27887197 catataagctataagttgttttcataaactatcatggagagcatataaaaataagctaaaaa 27887136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 30371135 - 30371212
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    |||||||||||||| |||| ||||||||||||  |||||||| | | |||  ||||||||| |||| | |||||||||    
T  30371135 ttttcatataagctataagttgttttcataagacattttggagagcgtattgaaataagctgaaaacaacttatggac 30371212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 1662686 - 1662722
Alignment:
Q  220 ttatgctagtaaataagctcaaataagtcaatctaaa 256  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  1662686 ttatgctagtagataagctcaaataagccaatctaaa 1662722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 11695974 - 11696014
Alignment:
Q  161 cttatgctaatagataagctcaaataaaacaatccaaacag 201  Q
    |||||||||||| ||||||||||||||  ||||||||||||    
T  11695974 cttatgctaataaataagctcaaataagtcaatccaaacag 11696014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 15361700 - 15361736
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctatt 71  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  15361700 ttttcatataagctataagctgttttcataagatatt 15361736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 17420190 - 17420356
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctata 134  Q
    |||||||||||||| ||| |||||||| |||||||| |  || |||  ||| ||||||| | |||| |  |||||||| ||| ||| | ||||||  |||    
T  17420190 ttttcatataagctataaactgttttcgtaagctatctcagaaaactaatggaaataagttgaaaacaatttatggacatgtaataag-ttgttttcata 17420288  T
Q  135 agctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacaggc 203  Q
    ||||||||  |||||||| || | || ||||||||||| | || |||||||||| ||||  ||||||||    
T  17420289 agctcttcaaaacagtctaacaagtgtttatgctaata-aaaaactcaaataaaccaattgaaacaggc 17420356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 24915128 - 24915060
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||| ||| ||||||||||||||||||| | ||||| ||| | |||||||||| | |||| ||||||||    
T  24915128 tatatgctataagctgttttcataagctgtcttggagaacttgtgaaaataagttgaaaaaagcttatg 24915060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 25005880 - 25005808
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 107  Q
    |||||||||||||| |||| ||||||||||||||||  |||| | | ||| |||| ||||| |||||| ||||    
T  25005880 ttttcatataagctataagttgttttcataagctatcctggagagcttataaaaacaagcttaaaatatctta 25005808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 29723602 - 29723634
Alignment:
Q  220 ttatgctagtaaataagctcaaataagtcaatc 252  Q
    |||||||||||||||||||||||| ||||||||    
T  29723602 ttatgctagtaaataagctcaaattagtcaatc 29723634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 42174848 - 42174916
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||| ||| |||| |||||| ||||| ||| ||||| ||| |||||||||||| |||||| ||||||||    
T  42174848 tatatgctataagttgtttttataagttatattggagaacttatgaaaataagttaaaaacagcttatg 42174916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 44422686 - 44422746
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct 95  Q
    |||||||||||||| |||||| |||| |||||||||  |||| | | ||||||||||||||    
T  44422686 ttttcatataagctataagctatttttataagctatcctggagagcttatgaaaataagct 44422746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 48830159 - 48830123
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctatt 71  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  48830159 ttttcatataagctataaactgttttcataagctatt 48830123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 4246397 - 4246474
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    ||||||||||| || |||||||||||||||||||||| |||| | ||||| |||||||| | |||| |||||||||||    
T  4246397 ttttcatataatctataagctgttttcataagctattatggagagcatataaaaataagttgaaaacagcttatggac 4246474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 8010359 - 8010509
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacag 149  Q
    ||||||||||| ||||| |||  |||| ||| |||  |||||| || ||||||||||||| || ||| ||  ||| ||||||||||||||| | | || |    
T  8010359 taagctgttttaataagttatcctggagaacttatagaaataaactgaaaatagcttatgaacatgtcatgagtt-gtttctataagctctcctggactg 8010457  T
Q  150 tcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacag 201  Q
    ||| || |||| |||||| |||||||||||||| ||||  ||||||||||||    
T  8010458 tctcacaaatgtttatgccaatagataagctcacataagtcaatccaaacag 8010509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 7148652 - 7148817
Alignment:
Q  34 cttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctat 133  Q
    |||| |||||||||| |||| | |||| ||||||||   |||| | | |||||||||||| | ||||||||||||||||  || ||| ||| |||||  |    
T  7148652 ctttacatataagctataaggtattttaataagctaccctggagagcttatgaaaataagttgaaaatagcttatggacaagtcataagtt-gtttccgt 7148750  T
Q  134 aagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaaca 200  Q
    ||||||| | ||||| ||| || | ||||||||| | |||||||||||||||||  ||| |||||||    
T  7148751 aagctctgctgaacactctcacaagtgcttatgcgactagataagctcaaataagtcaaaccaaaca 7148817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 264
Target Start/End: Original strand, 29249513 - 29249550
Alignment:
Q  227 agtaaataagctcaaataagtcaatctaaacatgccct 264  Q
    |||||||||||||||||||||||||| |||||||||||    
T  29249513 agtaaataagctcaaataagtcaatccaaacatgccct 29249550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 31461756 - 31461829
Alignment:
Q  133 taagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaacaggctta 206  Q
    |||||||||  ||||||||| || | | ||||||| |||||||||||||||||||| | || ||||||||||||    
T  31461756 taagctcttgcgaacagtctcacaagtacttatgcaaatagataagctcaaataaaccgatgcaaacaggctta 31461829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 103542 - 103585
Alignment:
Q  161 cttatgctaatagataagctcaaataaaacaatccaaacaggct 204  Q
    |||||||||||| ||||||||||||||  |||||||||||||||    
T  103542 cttatgctaatatataagctcaaataagtcaatccaaacaggct 103585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 34430529 - 34430470
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||| |||||||||||||||| ||||| ||  |||||||||||||| |||| ||||||||    
T  34430529 taaggtgttttcataagctatcttggagaagttatgaaaataagctgaaaaaagcttatg 34430470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 835317 - 835267
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaa 100  Q
    ||||| ||||||||||||||| ||||| ||| |||||||||||||| ||||    
T  835317 taagcagttttcataagctatcttggagaacttatgaaaataagctgaaaa 835267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 187
Target Start/End: Original strand, 2455819 - 2455948
Alignment:
Q  57 ttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttacc 156  Q
    |||||||||||||| ||||| | | |||| ||||||| | ||||||| |||||| | ||| ||| | ||||||| |||||||||||  |||| |||  |     
T  2455819 ttttcataagctatcttggagagcttatggaaataagttgaaaatagtttatgggcatgtcataag-ttgtttccataagctcttctaaacaatctcgca 2455917  T
Q  157 aatgcttatgctaatagataagctcaaataa 187  Q
    | |||||||||   |||||||||||||||||    
T  2455918 agtgcttatgccggtagataagctcaaataa 2455948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 24476589 - 24476663
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||||||||  ||||| ||||| ||||||||||||||| |||  ||  ||||||| | |||||||||||||    
T  24476589 ttttcatataagcgataagcagttttgataagctattttggagaacggattgaaataagttgaaaatagcttatg 24476663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 31624085 - 31624151
Alignment:
Q  43 taagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||| ||||||||||||||| ||||| ||||| ||  |||||||||||| | |||| ||||||||    
T  31624085 taagctataagctgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatg 31624151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 9093639 - 9093574
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 100  Q
    ||||| |||||||| ||||||||||||||||||| | || || ||| || ||||||||||| ||||    
T  9093639 ttttcgtataagctataagctgttttcataagctgtcttagagaacttaagaaaataagctgaaaa 9093574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 27924634 - 27924601
Alignment:
Q  87 aaataagctaaaaatagcttatggacgtgttata 120  Q
    |||||||||||||||| |||||||||||||||||    
T  27924634 aaataagctaaaaataacttatggacgtgttata 27924601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 28641824 - 28641747
Alignment:
Q  43 taagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttata 120  Q
    |||||| ||| |||||||||  ||||||| || | | | ||||||||||||||||||| |||||||| || |||||||    
T  28641824 taagctataaactgttttcaatagctattctgcagagcttatgaaaataagctaaaaacagcttatgaacatgttata 28641747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 31671157 - 31671092
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 100  Q
    |||||||||||||| |||||||||||| ||| ||||  | |||| | |||||||||||||| ||||    
T  31671157 ttttcatataagctataagctgttttcgtaaactatcctagatagcttatgaaaataagctgaaaa 31671092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 835219 - 835179
Alignment:
Q  161 cttatgctaatagataagctcaaataaaacaatccaaacag 201  Q
    ||||||||| |||||||||||||||||  ||||||||||||    
T  835219 cttatgctagtagataagctcaaataaggcaatccaaacag 835179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 2735062 - 2735130
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||| || |||||||||||||||||| || ||| | ||| |||||||||||||  |||| ||||||||    
T  2735062 tataatctataagctgttttcataagcaatcttgaacaacttatgaaaataagccgaaaacagcttatg 2735130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 3202024 - 3201956
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||| || |||||| | |||||||||||| ||||||||||||||  |||||||| |||| | ||||||    
T  3202024 tataaactataagctatgttcataagctatcttggataacatatgggaataagctgaaaacaacttatg 3201956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 4420652 - 4420735
Alignment:
Q  57 ttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctctt 141  Q
    ||||| |||||||| ||||| | | |||| ||||||||| |||| |||||||| || ||| |||  |||||||||||||||||||    
T  4420652 ttttcctaagctatcttggagagcttatggaaataagctgaaaacagcttatgaacatgtcataa-tttgtttctataagctctt 4420735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 5977042 - 5977078
Alignment:
Q  220 ttatgctagtaaataagctcaaataagtcaatctaaa 256  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  5977042 ttatgctagtagataagctcgaataagtcaatctaaa 5977078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 9109328 - 9109276
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataag 93  Q
    |||||||| |||||||||||||| | ||| |||||| ||| ||||||||||||    
T  9109328 tataagctataagctgttttcattaactaatttggagaacctatgaaaataag 9109276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 9604842 - 9604878
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggat 77  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  9604842 tataagctataagctgttttcataagttattttggat 9604878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 12111077 - 12111121
Alignment:
Q  159 tgcttatgctaatagataagctcaaataaaacaatccaaacaggc 203  Q
    ||||||||||| |||||||||||||||||  ||||||||| ||||    
T  12111077 tgcttatgctagtagataagctcaaataagtcaatccaaataggc 12111121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 12111080 - 12111112
Alignment:
Q  220 ttatgctagtaaataagctcaaataagtcaatc 252  Q
    ||||||||||| |||||||||||||||||||||    
T  12111080 ttatgctagtagataagctcaaataagtcaatc 12111112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 24982698 - 24982762
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagct 105  Q
    |||| ||| ||||||||||||||||| ||||||||| ||| |||||   ||||||||||| ||||    
T  24982698 tatatgctataagctgttttcataagttattttggagaacttatgagggtaagctaaaaaaagct 24982762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 31338090 - 31338122
Alignment:
Q  220 ttatgctagtaaataagctcaaataagtcaatc 252  Q
    ||||||||||| |||||||||||||||||||||    
T  31338090 ttatgctagtagataagctcaaataagtcaatc 31338122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 31813174 - 31813222
Alignment:
Q  61 cataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||||||||| ||||| |||||||||||||||||| ||||  |||||||    
T  31813174 cataagctatcttggagaacatatgaaaataagctgaaaacggcttatg 31813222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 17822942 - 17822874
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    |||| ||| |||| |||||||||||||||| ||||| ||| ||||||||||||||||||| ||||||||    
T  17822942 tatatgctataagttgttttcataagctatcttggagaacttatgaaaataagctaaaaaaagcttatg 17822874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 199
Target Start/End: Original strand, 23459615 - 23459777
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctata 134  Q
    ||||| |||||||| |||||||||||||||||  || ||| | ||| |||||| ||||| | |||||| |||||  || ||| ||| | || |||| |||    
T  23459615 ttttcttataagctataagctgttttcataagagatcttgaaaaacttatgaatataagttgaaaataacttattaacatgtcataagcttttttc-ata 23459713  T
Q  135 agctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaac 199  Q
    || ||| || |||||||||||| || ||||||||| ||||||||||||||||   ||||||||||    
T  23459714 agttctccgaaacagtcttacc-atacttatgctagtagataagctcaaatatgccaatccaaac 23459777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 42685417 - 42685476
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 100  Q
    ||||||||||||| |||||||||||||||||||||| ||| | ||||||||||| |||||    
T  42685417 tataagctctaagttgttttcataagctattttggagaacgtgtgaaaataagccaaaaa 42685476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 187
Target Start/End: Original strand, 28615529 - 28615662
Alignment:
Q  54 ctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgt-ttctataagctcttcggaacagtct 152  Q
    ||||||| ||| ||||| ||||| | | |||| ||||||| | |||||| || |||||| ||| ||| ||| || |||| ||||||||||| ||||||||    
T  28615529 ctgtttttataggctatcttggagagcttatggaaataaggtgaaaatatctaatggacatgtcataagttggtattct-taagctcttcgaaacagtct 28615627  T
Q  153 taccaatgcttatgctaatagataagctcaaataa 187  Q
    ||| ||||||||||  | |||||||||||||||||    
T  28615628 tacaaatgcttatgtcattagataagctcaaataa 28615662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 942184 - 942129
Alignment:
Q  42 ataagctctaagctgttttcataagctattttggataacatatgaaaataagctaa 97  Q
    ||||| |||||||||||||||||||||||| |||| ||| ||| ||||||||||||    
T  942184 ataagttctaagctgttttcataagctattatggagaacttataaaaataagctaa 942129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 9841053 - 9841141
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct-aaaaatagcttatggacgtgttatatgtt 124  Q
    |||||||||||||| |||| ||||||||||||||||  |||  ||| | |||||||||||| ||||| ||||||||||| ||| |||||||    
T  9841053 ttttcatataagctataagatgttttcataagctatcctgg--aacttgtgaaaataagctgaaaaacagcttatggacatgtcatatgtt 9841141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 16200058 - 16199999
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 100  Q
    |||| ||| ||||||||||||||||||||| |||||  || |||||||||||||||||||    
T  16200058 tatatgctataagctgttttcataagctatcttggaggacttatgaaaataagctaaaaa 16199999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 44638182 - 44638139
Alignment:
Q  221 tatgctagtaaataagctcaaataagtcaatctaaacatgccct 264  Q
    ||||||||||||||| |||||||||||||||| |||||||||||    
T  44638182 tatgctagtaaataaactcaaataagtcaatccaaacatgccct 44638139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 20031736 - 20031810
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct-aaaaatagcttat 108  Q
    ||||||| |||||| ||||| |||||||||||||||||| || ||| ||||||||| |||| ||||| |||||||    
T  20031736 ttttcatgtaagctataagcagttttcataagctattttagagaacttatgaaaatgagctgaaaaacagcttat 20031810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 2996560 - 2996637
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    |||| ||||||| | |||| |||||||||||||||| ||||| | | |||||||||||| | |||| |||||||||||    
T  2996560 tttttatataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggac 2996637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 55302251 - 55302308
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 107  Q
    ||||||||| ||||||||||| ||||| ||| |||||||||||||| |||| ||||||    
T  55302251 taagctgttatcataagctatgttggaaaacttatgaaaataagctgaaaaaagctta 55302308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 825552 - 825508
Alignment:
Q  56 gttttcataagctattttggataacatatgaaaataagctaaaaa 100  Q
    ||||||||||||||||||||| ||| |||||||||||||| ||||    
T  825552 gttttcataagctattttggagaacttatgaaaataagctgaaaa 825508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 199
Target Start/End: Original strand, 44319936 - 44320099
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctata 134  Q
    ||||||||||||||  ||||| |||| |||||||||  | || ||| ||||||||| || | ||||||||| |||||    | |||  |||||||  |||    
T  44319936 ttttcatataagctacaagctattttgataagctatcctagagaacttatgaaaattagttgaaaatagctaatggatacatcataa-tttgttttcata 44320034  T
Q  135 agctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataaaacaatccaaac 199  Q
    |||||| |  |||||||| || | || |||||| ||||| |||||||||||||| ||||||||||    
T  44320035 agctctcccaaacagtctcacaattgtttatgccaataggtaagctcaaataaaccaatccaaac 44320099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 267
Target Start/End: Complemental strand, 10205886 - 10205851
Alignment:
Q  232 ataagctcaaataagtcaatctaaacatgccctaat 267  Q
    ||||||||||||||||||||||||||||||| ||||    
T  10205886 ataagctcaaataagtcaatctaaacatgccataat 10205851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 22796763 - 22796806
Alignment:
Q  157 aatgcttatgctaatagataagctcaaataaaacaatccaaaca 200  Q
    ||||||||||||| ||||||| |||||||||| |||||||||||    
T  22796763 aatgcttatgctagtagataaactcaaataaatcaatccaaaca 22796806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 24444025 - 24444068
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggata 78  Q
    |||||||||||||| |||| ||||||||||||||||| ||||||    
T  24444025 ttttcatataagctataagttgttttcataagctattgtggata 24444068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 25487544 - 25487489
Alignment:
Q  132 ataagctcttcggaacagtcttaccaatgcttatgctaatagataagctcaaataa 187  Q
    |||||||||||  |||| |||||| | ||||||||||||||||||| |||||||||    
T  25487544 ataagctcttccaaacaatcttacaagtgcttatgctaatagataaactcaaataa 25487489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 53315360 - 53315478
Alignment:
Q  82 tatgaaaataagctaaaaatagcttatggacgtgttatatgtttgtttctataagctcttcggaacagtcttaccaatgcttatgctaatagataagctc 181  Q
    |||||||||||| |||||||||||||||||| ||| ||||| ||||||  |||||||||    || |||||||    ||||||| | | | |||||||||    
T  53315360 tatgaaaataagttaaaaatagcttatggacatgtgatatg-ttgttttcataagctctcacaaatagtcttatatgtgcttataccagtggataagctc 53315458  T
Q  182 aaataaaacaatccaaacag 201  Q
    ||||||  ||||||||||||    
T  53315459 aaataagtcaatccaaacag 53315478  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 1706609 - 1706683
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatg 109  Q
    ||||| || ||||| |||||||||||||||| |||| ||||| | | |||||||||||| |  ||||||||||||    
T  1706609 ttttcgtagaagctataagctgttttcataaactatcttggacagcttatgaaaataagttggaaatagcttatg 1706683  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 27043913 - 27043835
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggacg 113  Q
    ||||| |||||||| |||| |||||| |||| |||| ||||| ||| |||||| |||||||||||| |  |||||||||    
T  27043913 ttttcgtataagctataagatgtttttataaactatcttggagaacgtatgaatataagctaaaaacaatttatggacg 27043835  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 35571714 - 35571656
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataag 93  Q
    ||||| |||||||| ||||||||||||||||||||| || || ||| | ||||||||||    
T  35571714 ttttcgtataagctataagctgttttcataagctatcttagagaacttgtgaaaataag 35571656  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 52754586 - 52754624
Alignment:
Q  34 cttttcatataagctctaagctgttttcataagctattt 72  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  52754586 cttttcacataagctataagctgttttcataagctattt 52754624  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 53626763 - 53626813
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatg 85  Q
    |||||||||||||| |||||||||||||||||| ||| |||| || |||||    
T  53626763 ttttcatataagctataagctgttttcataagcgattatggacaatatatg 53626813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 10172172 - 10172213
Alignment:
Q  159 tgcttatgctaatagataagctcaaataaaacaatccaaaca 200  Q
    |||||||||  ||||||||||||||||||| |||||||||||    
T  10172172 tgcttatgcatatagataagctcaaataaatcaatccaaaca 10172213  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 249
Target Start/End: Complemental strand, 34430655 - 34430626
Alignment:
Q  220 ttatgctagtaaataagctcaaataagtca 249  Q
    ||||||||||||||||||||||||||||||    
T  34430655 ttatgctagtaaataagctcaaataagtca 34430626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 36048520 - 36048593
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttat 108  Q
    |||||||||||||| |||||| |||||| ||||||| || || | | |||| ||||||||| | ||||||||||    
T  36048520 ttttcatataagctataagctattttcaaaagctatcttagagagcttatggaaataagctgacaatagcttat 36048593  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 40174550 - 40174627
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatggac 112  Q
    |||||||| ||||| ||||||||||||||||||||  ||||| ||| | ||| |||||| | |||| || ||||||||    
T  40174550 ttttcataaaagctataagctgttttcataagctacattggagaacttgtgataataagttgaaaacagtttatggac 40174627  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 51630098 - 51630163
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaa 100  Q
    |||| ||||||||| |||||| |||||||||||||| ||| | ||  |||||||||||||| ||||    
T  51630098 ttttgatataagctataagctattttcataagctatcttgaagaatttatgaaaataagctgaaaa 51630163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 52315265 - 52315220
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagct 95  Q
    |||| ||||| |||||||||||||||| ||| ||||||||||||||    
T  52315265 taagttgtttccataagctattttggaaaacttatgaaaataagct 52315220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 3637335 - 3637299
Alignment:
Q  162 ttatgctaatagataagctcaaataaaacaatccaaa 198  Q
    ||||||||||||||||||||||||||  |||||||||    
T  3637335 ttatgctaatagataagctcaaataagtcaatccaaa 3637299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 11802528 - 11802596
Alignment:
Q  42 ataagctctaagctgttttcataagctattttggataacatatgaaaataagctaaaaatagcttatgg 110  Q
    |||||||  ||| ||||||||||||||||| |||| | | ||||| |||||||| |||| |||||||||    
T  11802528 ataagctacaagttgttttcataagctattatggagagcttatgagaataagctgaaaacagcttatgg 11802596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 29778782 - 29778842
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagctattttggataacatatgaaaataagct 95  Q
    |||||||||||||| |||| |||||||||||||||  ||| | | | ||||||||||||||    
T  29778782 ttttcatataagctgtaagttgttttcataagctaccttgaagagcttatgaaaataagct 29778842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 32421096 - 32421148
Alignment:
Q  39 catataagctctaagctgttttcataagctattttggataacatatgaaaata 91  Q
    |||||||||| ||||| |||| |||||||||||||| | ||| ||||||||||    
T  32421096 catataagctataagcagtttccataagctattttgaagaacttatgaaaata 32421148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 35571589 - 35571549
Alignment:
Q  161 cttatgctaatagataagctcaaataaaacaatccaaacag 201  Q
    ||||||||| |||||||||||||||||  ||||||||||||    
T  35571589 cttatgctagtagataagctcaaataagccaatccaaacag 35571549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 36460573 - 36460605
Alignment:
Q  35 ttttcatataagctctaagctgttttcataagc 67  Q
    |||||||||||||| ||||||||||||||||||    
T  36460573 ttttcatataagctataagctgttttcataagc 36460605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 49202638 - 49202690
Alignment:
Q  41 tataagctctaagctgttttcataagctattttggataacatatgaaaataag 93  Q
    |||||||| |||| ||||||| |||||||| |||||||||  |||||||||||    
T  49202638 tataagctataagttgttttcgtaagctatcttggataactaatgaaaataag 49202690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 22233 - 22290
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaaatagctta 107  Q
    ||||||||| ||||||||||| ||||| ||| |||||||||||||| |||| ||||||    
T  22233 taagctgttatcataagctatgttggaaaacttatgaaaataagctgaaaaaagctta 22290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 21353 - 21304
Alignment:
Q  50 taagctgttttcataagctattttggataacatatgaaaataagctaaaa 99  Q
    ||||||||||||||||||||| ||||| ||  ||||||||||| ||||||    
T  21353 taagctgttttcataagctatattggagaaattatgaaaataaactaaaa 21304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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