View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_low_60 (Length: 266)
Name: NF1317_low_60
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 70 - 222
Target Start/End: Original strand, 21597230 - 21597382
Alignment:
| Q |
70 |
agcaactccagcatcaatctcactatacttaaccatattcactagtgccaataccattaaacaataaataaccgttatcatagacattgaaccaattaaa |
169 |
Q |
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| T |
21597230 |
agcagctccagcatcaatctcactatacttaaccatattcacaagtgccaatgccatcaaacaataaataaccgtgatcatagacattgaaccaattaaa |
21597329 |
T |
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| Q |
170 |
ccaataggtatatctctagaagggtttttagtttcttcagccacagttgcaac |
222 |
Q |
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| T |
21597330 |
ccaataggtatatctctagaagggtttttagtttcttcagccatagttgcaac |
21597382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 21597039 - 21597081
Alignment:
| Q |
27 |
ataggtgttccagttttgggatgaacaagtgcaaaaaagggtg |
69 |
Q |
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| T |
21597039 |
ataggtgttccagtttttggatgaataagtgcaaaaaagggtg |
21597081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 11987203 - 11987245
Alignment:
| Q |
27 |
ataggtgttccagttttgggatgaacaagtgcaaaaaagggtg |
69 |
Q |
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| T |
11987203 |
ataggtgttccagttttgggatgaacaagtgcaaaaaagggtg |
11987245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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