View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_low_64 (Length: 251)
Name: NF1317_low_64
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_low_64 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38759862 - 38759639
Alignment:
| Q |
1 |
cttattaacctttctgaccttttctatgccatattaatgagctcatttcttgaaacgggatgccgtatacatgtttattttcttcaacnnnnnnnnt-ag |
99 |
Q |
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| T |
38759862 |
cttattaaccttgatggccttttctatatcatattaatgagctcatttcttgaaactggatgccatatacaggtttattttcttcaacaaaaaaaaacag |
38759763 |
T |
|
| Q |
100 |
tgttgaaatatacgaagaagatgaatgtttgtaattgaaaagatcctttgtccaattgaaaataaaactttcattagaataaatcttgttgttagtggtg |
199 |
Q |
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| T |
38759762 |
tgttgaaatatacgaagaagatgaatgtttgtaattgaaaagatcctttgtccaattgaaaataaaacttccattagaataaatcttgttgttagtggtg |
38759663 |
T |
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| Q |
200 |
gttcaatcctttgtggccgttttt |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
38759662 |
gttcaatcctttgtggccgttttt |
38759639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 22689731 - 22689515
Alignment:
| Q |
6 |
taacctttctgaccttttctatgccatattaatgagctcatttcttgaaacgggatgccgtatacatgtttattttcttcaacnnnnnnnntagtgttga |
105 |
Q |
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| T |
22689731 |
taacctttctagcctttcctatgccatattaatgacctcatttcttgaaactgaatgccatatgcaagtttattttcttccaaaaaaaaac-agtgttga |
22689633 |
T |
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| Q |
106 |
aatatacgaagaagatgaatgtttgtaattgaaaagatcctttgtccaattgaaaataaaactttcattagaataaatcttgttgttagtggtggttcaa |
205 |
Q |
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| T |
22689632 |
aatatacgaagaagatgaatgttt-taattgaaaagatcctttgtccaattgaaaataaaacttcgattagaataaatcttgttgttaatggtggttcaa |
22689534 |
T |
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| Q |
206 |
tcctttgtggccgtttttg |
224 |
Q |
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| T |
22689533 |
tcctttgtggccgtttttg |
22689515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3931511 - 3931735
Alignment:
| Q |
1 |
cttattaacctttctgaccttttctatgccatattaatgagctcatttcttgaaacgggatgccgtatacatgtttattttcttcaacnnnnnnnnta-- |
98 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||| | |
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| T |
3931511 |
cttattaacctttctggccttttctatgtcatattaatgagctcatttcttgaaactggatgctatatacaggtttattttcttcaacaaaaaaaaaaca |
3931610 |
T |
|
| Q |
99 |
gtgttgaaatatacgaagaagatgaatgtttgtaattgaaaagatcctttgtccaattgaaaataaaactttcattagaataaatcttgttgttagtggt |
198 |
Q |
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|| ||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3931611 |
gttttgaaatatacgacgaagatgaatgtttgcaattgaaaagatcttttgtccaattgaaaataaaacttctattagaataaatcttgttgttagtggt |
3931710 |
T |
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| Q |
199 |
ggttcaatcctttgtggccgttttt |
223 |
Q |
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||||||||||||||||||||||||| |
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| T |
3931711 |
ggttcaatcctttgtggccgttttt |
3931735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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