View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_low_66 (Length: 251)
Name: NF1317_low_66
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 18101153 - 18100937
Alignment:
| Q |
8 |
ctccaacaatatcccaaatatgcaaactagacctctccaacgaactttttggcggcgtcaacgatgcatgtggaaacaacctcgatcgaagccgctgttg |
107 |
Q |
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| T |
18101153 |
ctccaacagaatcccaaatatgcaaactagacctctccaacgaactctttggcggcgtcaacgatgcatgtggaaacaacctcgatcgaagccgctgttg |
18101054 |
T |
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| Q |
108 |
tcccgtactcacggcctggctcttcgcggctcatgcgcgaagagcattagagatttctcctccaccaccggaaaattcagtcgatcttccgatgatgccg |
207 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
18101053 |
tcccgtactcgcggcctggctcttcgcggctcatgcgcgaagagcattagagatttctcctccaccacgggaaaattcagtcgatcttccgatgatgccg |
18100954 |
T |
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| Q |
208 |
gatgattctcagaagtg |
224 |
Q |
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||||||||||||||||| |
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| T |
18100953 |
gatgattctcagaagtg |
18100937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 37858761 - 37858545
Alignment:
| Q |
8 |
ctccaacaatatcccaaatatgcaaactagacctctccaacgaactttttggcggcgtcaacgatgcatgtggaaacaacctcgatcgaagccgctgttg |
107 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37858761 |
ctccaacagaatcccaaatatgcaaactagacctctccaacgaactctttggcggcgtcaacgatgcatgtggaaacaacctcgatcgaagccgctgttg |
37858662 |
T |
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| Q |
108 |
tcccgtactcacggcctggctcttcgcggctcatgcgcgaagagcattagagatttctcctccaccaccggaaaattcagtcgatcttccgatgatgccg |
207 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37858661 |
tcccgtactcgcggcctggctcttcgcggctcatgcgcgaagagcattagagatttctcctccaccacgggaaaattcagtcgatcttccgatgatgccg |
37858562 |
T |
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| Q |
208 |
gatgattctcagaagtg |
224 |
Q |
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||||||||||||||||| |
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| T |
37858561 |
gatgattctcagaagtg |
37858545 |
T |
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