View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1317_low_80 (Length: 205)
Name: NF1317_low_80
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_low_80 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 24949697 - 24949827
Alignment:
| Q |
1 |
atctagataaccataagaaatggtttcatcagccttttaggcctgaatttgagcgatgtcaattactgcattaactaagaactaactaattacatgatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24949697 |
atctagataaccataagaaatggtttcatcagccttttaggcctgaatttgagcgatgtcaattactgcattaactaagaactaactaattacatgatac |
24949796 |
T |
|
| Q |
101 |
ttcattattttgcataacctgcagtatattg |
131 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |
|
|
| T |
24949797 |
ttcattactttgcataacctgcagtatattg |
24949827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 24366741 - 24366802
Alignment:
| Q |
39 |
aggcctgaatttgagcgatgtcaattactgcattaactaagaactaactaattacatgatac |
100 |
Q |
| |
|
|||||||||| ||||| |||| ||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
24366741 |
aggcctgaatatgagcagtgtcgattactgcattaactaataactacctaattacatgatac |
24366802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University