View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1317_low_9 (Length: 514)
Name: NF1317_low_9
Description: NF1317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1317_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 105 - 504
Target Start/End: Complemental strand, 32670732 - 32670333
Alignment:
| Q |
105 |
atacgatggaccatatcaaccagtttatgttcaaaacgttagctgctttaccgtttgccgcatcgtacttgtcgtgaggtgcatagcagagcgacagaga |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32670732 |
atacgatggaccatatcaaccagtttatgttcaaaacgttagctgctttaccgtttgccgcatcgtacttgccgtgaggtgcatagcagagcgacagaga |
32670633 |
T |
|
| Q |
205 |
cgatactccgccctctctttttccgccaccgccggttagttttacttccattcttccattttcgttccttttcaattcttccttctgtcttataattcac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32670632 |
cgatactccgccctctctttttccgccaccgccggttagtttcacttccattcttccattttcgttccttttcaattcttccttttgtcttataattcac |
32670533 |
T |
|
| Q |
305 |
tgtttattgttgtttcattcgtaaaattcacataatttttctcttaattttcaattacattacattaacttttgttctactatgttttagtcacacattc |
404 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32670532 |
tgtttattgttgtttcattcgtgaaattcacataatttttctcttaattttcaattacattacattaacttttgttctactatgttttagtcacacattc |
32670433 |
T |
|
| Q |
405 |
atcaattcatgaaatgcacctatgaataaatgcttcaaatgttaaattaacatttggggtgtttttgtttttggtgaaatggagattgttgttagaataa |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32670432 |
atcaattcatgaaatgcacctatgaataaatgcttcaaatgttaaattaacatttggggtgtttttgtttttggtgaaatggagattgttgttagaataa |
32670333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 189 - 290
Target Start/End: Original strand, 23211412 - 23211513
Alignment:
| Q |
189 |
agcagagcgacagagacgatactccgccctctctttttccgccaccgccggttagttttacttccattcttccattttcgttccttttcaattcttcctt |
288 |
Q |
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|||||||||||||||| |||||||||||| |||||| |||||| ||||||||| |||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
23211412 |
agcagagcgacagagatgatactccgccccctctttctccgccgccgccggttcgtttcacttccattcttccattttcgttcctttccaattcttcctt |
23211511 |
T |
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| Q |
289 |
ct |
290 |
Q |
| |
|
|| |
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|
| T |
23211512 |
ct |
23211513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 189 - 290
Target Start/End: Complemental strand, 23220108 - 23220007
Alignment:
| Q |
189 |
agcagagcgacagagacgatactccgccctctctttttccgccaccgccggttagttttacttccattcttccattttcgttccttttcaattcttcctt |
288 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||| |||||| ||||||||| |||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
23220108 |
agcagagcgacagagatgatactccgccccctctttctccgccgccgccggttcgtttcacttccattcttccattttcgttcctttccaattcttcctt |
23220009 |
T |
|
| Q |
289 |
ct |
290 |
Q |
| |
|
|| |
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|
| T |
23220008 |
ct |
23220007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 407 - 463
Target Start/End: Complemental strand, 12447017 - 12446961
Alignment:
| Q |
407 |
caattcatgaaatgcacctatgaataaatgcttcaaatgttaaattaacatttgggg |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
12447017 |
caattcatgaaatgcacctatgaataaatgcttcaaatgttaaattaacatgtgggg |
12446961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 211 - 290
Target Start/End: Complemental strand, 12447125 - 12447046
Alignment:
| Q |
211 |
tccgccctctctttttccgccaccgccggttagttttacttccattcttccattttcgttccttttcaattcttccttct |
290 |
Q |
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||||||| |||||| |||||| | ||||||| |||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12447125 |
tccgccccctctttctccgccgctgccggttcgtttcgcttccattcttccattttcgttcctttccaattcttccttct |
12447046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 407 - 463
Target Start/End: Complemental strand, 18666378 - 18666322
Alignment:
| Q |
407 |
caattcatgaaatgcacctatgaataaatgcttcaaatgttaaattaacatttgggg |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18666378 |
caattcatgaaatgcacctatgaataaatgcttcaaatgttaaattaacatgtgggg |
18666322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 211 - 290
Target Start/End: Complemental strand, 18666486 - 18666407
Alignment:
| Q |
211 |
tccgccctctctttttccgccaccgccggttagttttacttccattcttccattttcgttccttttcaattcttccttct |
290 |
Q |
| |
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||||||| |||||| |||||| | ||||||| |||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18666486 |
tccgccccctctttctccgccgctgccggttcgtttcgcttccattcttccattttcgttcctttccaattcttccttct |
18666407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 407 - 463
Target Start/End: Complemental strand, 35494464 - 35494408
Alignment:
| Q |
407 |
caattcatgaaatgcacctatgaataaatgcttcaaatgttaaattaacatttgggg |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
35494464 |
caattcatgaaatgcacctatgaataaatgcttcaaatgttaaattaacatgtgggg |
35494408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 211 - 290
Target Start/End: Complemental strand, 35494572 - 35494493
Alignment:
| Q |
211 |
tccgccctctctttttccgccaccgccggttagttttacttccattcttccattttcgttccttttcaattcttccttct |
290 |
Q |
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||||||| |||||| |||||| | ||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
35494572 |
tccgccccctctttctccgccgctgccggttcgtttcgctttcattcttccattttcgttcctttccaattcttccttct |
35494493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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