View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13180_high_1 (Length: 762)
Name: NF13180_high_1
Description: NF13180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13180_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 19 - 510
Target Start/End: Original strand, 26284534 - 26285023
Alignment:
| Q |
19 |
ttttcacctaataatttaatttaaatattttgtagtgtagatgtactaggttagtggctgcagatggaattagattacaaaatgacgacaactacctaat |
118 |
Q |
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| T |
26284534 |
ttttcacctaataatttaatttaaatattttgtagtgtagatgtactaggttagtggctgcagatggaattagattacaaaatgacgacaactacctaat |
26284633 |
T |
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| Q |
119 |
tttcatgttttggatagcgaagttttgaggaaacaatgcactttatttacattttggatactatatagtaaaagagaaagtatttcagatactttataac |
218 |
Q |
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| T |
26284634 |
tttcatgttttggatagcgaagttttgaggaaacaatgcactttatttacattttggatactatatagtaaaagagaaagcatttcagatactttataac |
26284733 |
T |
|
| Q |
219 |
atgtacatgatgtactacatggttttgtaaccatttaattgttgtagcataccttgactttattgacagaaacaacctattttcctttatgtaacagatg |
318 |
Q |
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| T |
26284734 |
atgtacatgatgtactacatggttttgtaaccatttaattgttgtagcataccttgactttattgacagaaacaacctattttcctttatgtaacagatg |
26284833 |
T |
|
| Q |
319 |
ctgtctttaacatgagagtggcaactctttcattgagaaaacaagtcactatataatttgttgttttgtaacatgttttgccccttgttgtcaatagtca |
418 |
Q |
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| T |
26284834 |
ttgtctttaacatgagagtggcaactctttcattgagaaaacaagtcactatacaatttgttgttttgtaacatgttttgccccttgttgtcaatagtca |
26284933 |
T |
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| Q |
419 |
aacgacatgtaccaaactccactcgtgaatgaacttctcaaacttata-tacttgaacaatattggacaacctaacacaataatcaaaattag |
510 |
Q |
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| T |
26284934 |
aaggacatgtaccaaactccactcgtgaatgaacttctcaaacatatacttcttgaacaatattggaca---taacacaataatcaaaattag |
26285023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 510 - 752
Target Start/End: Original strand, 376976 - 377218
Alignment:
| Q |
510 |
ggctccgtctagcgtgagcggccaatatgggtctctcattgtgcaaatgagtttataaccgcatgatataagattaaaatatttgatggtcaagatgctt |
609 |
Q |
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| T |
376976 |
ggctccgtctagcgtgagcggccaatatgggtctttcattgtgcaaatgagtttataaccgcatgatataagattaaaatatttgatggtcaagatgctt |
377075 |
T |
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| Q |
610 |
tacctataacttgtttaaacctgattcaacagtttatggcacatttttaacatttggcacgtcgactatactaatttaaatttaaatttacgagagcacc |
709 |
Q |
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| T |
377076 |
tatctataacttgtttaaacctgattcaacagtttgtggcacatttttaacatttggcacgtcgactatactaattaaaatttaaatttacgagaacacc |
377175 |
T |
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| Q |
710 |
cattatttatgtttattttcagtgacctccatgcttgatgatg |
752 |
Q |
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| T |
377176 |
cattatttatgtttattttcagtgacctccatgcttaatgatg |
377218 |
T |
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